Wall clock time and date at job start Tue Mar 31 2020 21:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47129 * 2 1 4 4 C 1.50693 * 109.47466 * 239.99701 * 2 1 3 5 5 O 1.21280 * 120.00302 * 240.00116 * 4 2 1 6 6 N 1.34781 * 119.99957 * 59.99879 * 4 2 1 7 7 C 1.46500 * 119.99967 * 179.97438 * 6 4 2 8 8 H 1.09003 * 109.49580 * 34.93756 * 7 6 4 9 9 C 1.53041 * 109.49714 * 154.99971 * 7 6 4 10 10 C 1.53036 * 109.53794 * 181.31702 * 9 7 6 11 11 C 1.53188 * 109.31440 * 298.63657 * 10 9 7 12 12 N 1.46928 * 108.77542 * 54.64002 * 11 10 9 13 13 C 1.36934 * 120.63661 * 126.36763 * 12 11 10 14 14 H 1.08003 * 119.99546 * 332.31892 * 13 12 11 15 15 C 1.38813 * 119.99930 * 152.58128 * 13 12 11 16 16 N 1.31617 * 120.00213 * 342.49846 * 15 13 12 17 17 Si 1.86797 * 119.99438 * 162.49328 * 15 13 12 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46821 * 120.00595 * 17 15 13 20 20 H 1.48497 * 109.47515 * 240.00306 * 17 15 13 21 21 C 1.46931 * 118.73493 * 306.63900 * 12 11 10 22 22 C 1.50705 * 109.46955 * 119.99488 * 2 1 3 23 23 C 1.38255 * 119.96543 * 240.00253 * 22 2 1 24 24 C 1.38210 * 120.06818 * 179.97438 * 23 22 2 25 25 C 1.38410 * 120.00261 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.03808 * 179.97438 * 25 24 23 27 27 C 1.38651 * 119.92648 * 359.97438 * 25 24 23 28 28 F 1.35099 * 120.03179 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.95974 * 59.72584 * 22 2 1 30 30 H 1.08999 * 109.47432 * 300.00412 * 1 2 3 31 31 H 1.09004 * 109.46588 * 60.00420 * 1 2 3 32 32 H 1.08995 * 109.46949 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00232 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.45567 * 61.29851 * 9 7 6 35 35 H 1.08995 * 109.46015 * 301.34412 * 9 7 6 36 36 H 1.09006 * 109.49540 * 178.68709 * 10 9 7 37 37 H 1.08997 * 109.52357 * 58.60423 * 10 9 7 38 38 H 1.08997 * 109.58842 * 294.84947 * 11 10 9 39 39 H 1.09005 * 109.58971 * 174.42244 * 11 10 9 40 40 H 0.96995 * 119.99665 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.58425 * 173.14633 * 21 12 11 42 42 H 1.09001 * 109.58503 * 293.57191 * 21 12 11 43 43 H 1.08000 * 119.96389 * 359.97438 * 23 22 2 44 44 H 1.08002 * 119.99730 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.00371 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1957 -0.9404 -3.6506 8 1 2.2340 -2.0131 -3.4614 9 6 1.2519 -0.6619 -4.8227 10 6 1.7436 -1.4091 -6.0645 11 6 3.1410 -0.9053 -6.4387 12 7 4.0199 -1.0359 -5.2685 13 6 5.2090 -1.7086 -5.3606 14 1 5.3275 -2.4988 -6.0872 15 6 6.2603 -1.3784 -4.5164 16 7 6.2560 -0.2268 -3.8791 17 14 7.6812 -2.5687 -4.2848 18 1 7.4485 -3.7834 -5.1068 19 1 8.9464 -1.9181 -4.7108 20 1 7.7787 -2.9507 -2.8531 21 6 3.5957 -0.4361 -3.9960 22 6 2.0323 -0.7103 1.2306 23 6 2.8270 -0.0377 2.1402 24 6 3.2884 -0.6869 3.2697 25 6 2.9545 -2.0117 3.4915 26 9 3.4056 -2.6471 4.5951 27 6 2.1566 -2.6859 2.5798 28 9 1.8290 -3.9789 2.7945 29 6 1.6932 -2.0319 1.4514 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1494 0.5388 -2.5436 34 1 1.2327 0.4087 -5.0270 35 1 0.2476 -1.0009 -4.5688 36 1 1.0581 -1.2290 -6.8926 37 1 1.7865 -2.4776 -5.8534 38 1 3.0841 0.1413 -6.7380 39 1 3.5364 -1.5017 -7.2610 40 1 6.9904 0.0036 -3.2889 41 1 4.2909 -0.7231 -3.2072 42 1 3.5766 0.6495 -4.0922 43 1 3.0876 0.9962 1.9678 44 1 3.9095 -0.1604 3.9793 45 1 1.0690 -2.5550 0.7423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009590042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:22 Heat of formation + Delta-G solvation = -108.774321 kcal Electronic energy + Delta-G solvation = -29764.148802 eV Core-core repulsion = 25416.860603 eV Total energy + Delta-G solvation = -4347.288199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.55861 -49.64490 -41.41864 -39.91728 -38.77892 -35.78899 -35.08987 -34.33037 -31.93312 -31.82670 -30.80100 -29.68234 -27.24670 -25.84711 -24.40863 -23.98755 -23.81347 -22.62516 -21.25442 -20.67657 -19.03962 -18.74415 -18.51706 -18.16398 -17.57127 -17.35113 -17.14803 -16.74184 -16.07856 -16.01748 -15.79803 -15.59662 -15.35844 -15.28868 -15.08884 -14.84737 -14.73110 -14.33421 -14.13995 -13.97727 -13.60124 -13.52325 -13.33097 -12.99979 -12.96541 -12.69319 -12.68712 -12.48865 -12.26890 -12.16770 -12.13354 -12.05872 -11.67988 -11.57466 -11.24102 -10.68555 -10.57247 -10.07489 -10.01292 -9.68845 -8.69204 -7.91253 -5.35636 -0.17309 0.00666 1.37491 1.42633 1.50133 1.74381 2.11091 2.43961 2.52241 2.75438 3.23617 3.25373 3.38516 3.56278 3.71814 3.89270 3.98299 4.02506 4.07090 4.16442 4.23113 4.29599 4.36851 4.50546 4.64634 4.68689 4.78874 4.83493 4.83791 4.91350 4.93574 4.96923 5.02680 5.10222 5.21522 5.24849 5.27832 5.36601 5.38459 5.51203 5.54470 5.62059 5.71364 5.81575 6.35819 6.70634 7.11667 7.42548 7.85285 8.32930 9.13454 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003593 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.254685 B = 7790.939543 C = 9338.747266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 H 0.143 0.857 4 C 0.505 3.495 5 O -0.583 6.583 6 N -0.704 5.704 7 C 0.132 3.868 8 H 0.045 0.955 9 C -0.106 4.106 10 C -0.123 4.123 11 C 0.135 3.865 12 N -0.611 5.611 13 C -0.264 4.264 14 H 0.065 0.935 15 C -0.045 4.045 16 N -0.927 5.927 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.300 1.300 21 C 0.179 3.821 22 C -0.053 4.053 23 C -0.084 4.084 24 C -0.120 4.120 25 C 0.046 3.954 26 F -0.140 7.140 27 C 0.039 3.961 28 F -0.145 7.145 29 C -0.101 4.101 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.415 0.585 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.247 0.753 41 H 0.042 0.958 42 H 0.002 0.998 43 H 0.177 0.823 44 H 0.176 0.824 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 6.483 10.332 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 H 0.160 0.840 4 C 0.292 3.708 5 O -0.462 6.462 6 N -0.356 5.356 7 C 0.025 3.975 8 H 0.064 0.936 9 C -0.144 4.144 10 C -0.162 4.162 11 C 0.010 3.990 12 N -0.335 5.335 13 C -0.394 4.394 14 H 0.083 0.917 15 C -0.241 4.241 16 N -0.573 5.573 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.228 1.228 21 C 0.052 3.948 22 C -0.054 4.054 23 C -0.102 4.102 24 C -0.138 4.138 25 C 0.026 3.974 26 F -0.119 7.119 27 C 0.019 3.981 28 F -0.124 7.124 29 C -0.120 4.120 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.195 0.805 44 H 0.193 0.807 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.252 5.757 10.510 20.192 hybrid contribution 1.276 -1.123 0.412 1.749 sum -14.975 4.634 10.922 19.105 Atomic orbital electron populations 1.21854 0.89086 1.03205 1.05285 1.20416 0.99839 1.00921 0.87113 0.83971 1.21193 0.79459 0.84327 0.85777 1.90773 1.39282 1.28949 1.87236 1.45824 1.52950 1.32186 1.04662 1.21355 0.95327 0.95852 0.84947 0.93621 1.21632 0.98012 1.01551 0.93165 1.21904 0.96839 0.99386 0.98102 1.21180 0.90741 0.97814 0.89256 1.44253 1.19232 1.64308 1.05696 1.19506 0.89813 1.11134 1.18992 0.91724 1.25672 0.99684 0.97366 1.01420 1.70151 1.32885 1.21268 1.32986 0.85396 0.79787 0.79544 0.76961 1.18969 1.21020 1.22758 1.20717 0.92492 0.93264 0.88352 1.19532 0.97170 0.92787 0.95862 1.21420 0.94657 1.02219 0.91884 1.21381 1.01174 0.91036 1.00212 1.17988 1.00782 0.93225 0.85432 1.91484 1.87564 1.82316 1.50540 1.17923 1.02711 0.79647 0.97847 1.91468 1.91325 1.34660 1.94925 1.20892 1.00905 0.95580 0.94607 0.88793 0.89179 0.92948 0.74736 0.90435 0.89493 0.88502 0.93384 0.95821 0.92972 0.94359 0.93937 0.97999 0.80525 0.80684 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.90 71.98 0.64 -0.98 16 2 C -0.06 -1.16 2.90 -12.29 -0.04 -1.20 16 3 H 0.14 1.82 7.87 -2.38 -0.02 1.80 16 4 C 0.51 15.50 6.99 87.65 0.61 16.11 16 5 O -0.58 -25.31 14.79 -3.03 -0.04 -25.35 16 6 N -0.70 -19.55 4.97 -442.85 -2.20 -21.75 16 7 C 0.13 4.82 2.59 44.93 0.12 4.94 16 8 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 9 C -0.11 -2.87 5.36 30.62 0.16 -2.70 16 10 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 11 C 0.13 5.37 6.52 86.36 0.56 5.93 16 12 N -0.61 -31.19 3.00 -699.92 -2.10 -33.29 16 13 C -0.26 -15.18 9.58 84.03 0.81 -14.37 16 14 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 15 C -0.05 -2.68 4.91 84.86 0.42 -2.26 16 16 N -0.93 -56.94 11.20 21.65 0.24 -56.69 16 17 Si 0.95 47.91 29.59 68.60 2.03 49.94 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.30 -15.55 7.11 99.48 0.71 -14.85 16 21 C 0.18 8.68 4.86 86.22 0.42 9.10 16 22 C -0.05 -1.19 4.39 -19.86 -0.09 -1.28 16 23 C -0.08 -1.54 9.67 22.27 0.22 -1.33 16 24 C -0.12 -2.37 10.02 22.30 0.22 -2.14 16 25 C 0.05 1.21 7.31 22.41 0.16 1.37 16 26 F -0.14 -3.92 17.18 44.97 0.77 -3.15 16 27 C 0.04 1.14 7.31 22.41 0.16 1.30 16 28 F -0.14 -4.65 17.18 44.97 0.77 -3.88 16 29 C -0.10 -2.75 7.91 22.30 0.18 -2.57 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.70 7.56 -2.38 -0.02 0.68 16 32 H 0.05 0.76 7.37 -2.39 -0.02 0.75 16 33 H 0.42 7.62 8.02 -92.71 -0.74 6.88 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 40 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.04 2.51 6.04 -2.39 -0.01 2.50 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.18 1.94 7.94 -2.91 -0.02 1.92 16 44 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.13 3.74 7.51 -2.91 -0.02 3.72 16 Total: -1.00 -80.87 373.62 4.49 -76.38 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.27 Total: 11.40 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.74 Total: 6.39 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.06 Total: -111.73 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.35 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.55 Total: -7.03 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -80.87 4.49 -76.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009590042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.391 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds