Wall clock time and date at job start Tue Mar 31 2020 21:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46847 * 2 1 4 4 C 1.50690 * 109.47295 * 120.00317 * 2 1 3 5 5 O 1.21278 * 120.00184 * 120.00159 * 4 2 1 6 6 N 1.34784 * 120.00299 * 300.00022 * 4 2 1 7 7 C 1.46495 * 120.00291 * 180.02562 * 6 4 2 8 8 H 1.09004 * 109.49794 * 34.93561 * 7 6 4 9 9 C 1.53033 * 109.49745 * 154.99925 * 7 6 4 10 10 C 1.53045 * 109.54030 * 181.34799 * 9 7 6 11 11 C 1.53191 * 109.31400 * 298.63884 * 10 9 7 12 12 N 1.46928 * 108.77557 * 54.62787 * 11 10 9 13 13 C 1.36939 * 120.62907 * 126.36988 * 12 11 10 14 14 H 1.08004 * 120.00193 * 332.50885 * 13 12 11 15 15 C 1.38805 * 120.00142 * 152.50281 * 13 12 11 16 16 N 1.31627 * 120.00040 * 335.03066 * 15 13 12 17 17 Si 1.86805 * 120.00321 * 155.03039 * 15 13 12 18 18 H 1.48497 * 109.46928 * 59.99734 * 17 15 13 19 19 H 1.48500 * 109.46770 * 300.00395 * 17 15 13 20 20 H 1.48492 * 109.47261 * 180.02562 * 17 15 13 21 21 C 1.46922 * 118.74004 * 306.64952 * 12 11 10 22 22 C 1.50694 * 109.46825 * 240.00569 * 2 1 3 23 23 C 1.38254 * 119.96537 * 299.71958 * 22 2 1 24 24 C 1.38217 * 120.07438 * 179.76817 * 23 22 2 25 25 C 1.38418 * 119.99679 * 0.51222 * 24 23 22 26 26 F 1.35097 * 120.03707 * 179.72020 * 25 24 23 27 27 C 1.38655 * 119.92790 * 359.74427 * 25 24 23 28 28 F 1.35100 * 120.03433 * 180.02562 * 27 25 24 29 29 C 1.38208 * 119.96676 * 119.99804 * 22 2 1 30 30 H 1.09003 * 109.46843 * 299.99339 * 1 2 3 31 31 H 1.09000 * 109.47578 * 59.99799 * 1 2 3 32 32 H 1.08997 * 109.46847 * 180.02562 * 1 2 3 33 33 H 0.97006 * 119.99419 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46474 * 61.32943 * 9 7 6 35 35 H 1.09000 * 109.46479 * 301.36923 * 9 7 6 36 36 H 1.08996 * 109.50007 * 178.68408 * 10 9 7 37 37 H 1.09001 * 109.51952 * 58.60392 * 10 9 7 38 38 H 1.09004 * 109.58295 * 294.84849 * 11 10 9 39 39 H 1.08995 * 109.58536 * 174.41934 * 11 10 9 40 40 H 0.96999 * 119.99790 * 354.25710 * 16 15 13 41 41 H 1.08997 * 109.58703 * 173.14589 * 21 12 11 42 42 H 1.09000 * 109.58443 * 293.56442 * 21 12 11 43 43 H 1.08001 * 119.96465 * 0.02562 * 23 22 2 44 44 H 1.07994 * 120.00272 * 180.25172 * 24 23 22 45 45 H 1.08004 * 120.00074 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6964 1.1190 6 7 1.7068 -0.2501 2.4546 7 6 2.1957 -0.9404 3.6506 8 1 3.1946 -1.3333 3.4612 9 6 2.2472 0.0425 4.8225 10 6 2.7895 -0.6692 6.0641 11 6 1.8504 -1.8199 6.4392 12 7 1.6808 -2.6924 5.2692 13 6 1.9204 -4.0375 5.3614 14 1 2.6247 -4.4120 6.0896 15 6 1.2581 -4.9198 4.5190 16 7 0.0956 -4.5864 3.9994 17 14 2.0165 -6.5803 4.1227 18 1 2.2009 -7.3525 5.3776 19 1 3.3338 -6.3790 3.4673 20 1 1.1182 -7.3291 3.2076 21 6 1.2553 -2.0933 3.9969 22 6 2.0323 -0.7103 -1.2305 23 6 1.7026 -2.0356 -1.4458 24 6 2.1581 -2.6878 -2.5760 25 6 2.9540 -2.0172 -3.4886 26 9 3.4043 -2.6556 -4.5908 27 6 3.2890 -0.6896 -3.2700 28 9 4.0653 -0.0328 -4.1596 29 6 2.8268 -0.0379 -2.1398 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 2.5436 34 1 1.2440 0.4163 5.0274 35 1 2.9005 0.8772 4.5680 36 1 2.8479 0.0373 6.8920 37 1 3.7830 -1.0646 5.8524 38 1 0.8823 -1.4186 6.7390 39 1 2.2822 -2.3908 7.2612 40 1 -0.3377 -3.7617 4.2694 41 1 1.2944 -2.8445 3.2081 42 1 0.2377 -1.7148 4.0936 43 1 1.0850 -2.5606 -0.7321 44 1 1.8965 -3.7219 -2.7451 45 1 3.0870 0.9963 -1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009590045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:34 Heat of formation + Delta-G solvation = -90.247447 kcal Electronic energy + Delta-G solvation = -29771.122114 eV Core-core repulsion = 25424.637301 eV Total energy + Delta-G solvation = -4346.484813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.54049 -48.61829 -40.34422 -38.81520 -37.44152 -34.37342 -34.08024 -32.85914 -31.02519 -29.95758 -29.52058 -28.57555 -25.15580 -24.91648 -23.39329 -22.89232 -22.11538 -21.46530 -19.91370 -19.34181 -18.04913 -17.51949 -17.40661 -17.13739 -16.43540 -16.26672 -15.82378 -15.16288 -15.03602 -14.65269 -14.54541 -14.49334 -14.13128 -14.07172 -13.70143 -13.62240 -13.43669 -13.10499 -12.97156 -12.71656 -12.50540 -12.35375 -12.07783 -11.91384 -11.74348 -11.62326 -11.20117 -11.14397 -10.91437 -10.66013 -10.39636 -10.28502 -10.05398 -9.88789 -9.52877 -9.37805 -9.13191 -8.71578 -8.69922 -8.35250 -6.89487 -6.06699 -3.23314 0.79228 0.91229 2.85982 3.11897 3.49405 3.52799 3.58985 3.68397 3.73833 4.15487 4.29807 4.46598 4.61591 4.77425 4.87735 4.94887 4.97279 5.08743 5.19585 5.30101 5.34279 5.43706 5.51280 5.56705 5.58775 5.63972 5.68217 5.79465 5.90332 5.93516 6.00224 6.03654 6.14420 6.27065 6.27959 6.31088 6.51870 6.63694 6.64778 6.71815 6.78910 6.99039 7.23505 7.75782 8.01433 8.48618 8.58187 9.10379 9.84298 10.26814 11.21544 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003451 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.175791 B = 8111.830053 C = 9644.232996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.106 0.894 4 C 0.512 3.488 5 O -0.521 6.521 6 N -0.720 5.720 7 C 0.123 3.877 8 H 0.084 0.916 9 C -0.115 4.115 10 C -0.132 4.132 11 C 0.144 3.856 12 N -0.595 5.595 13 C -0.353 4.353 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.912 5.912 17 Si 1.061 2.939 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.285 1.285 21 C 0.148 3.852 22 C -0.046 4.046 23 C -0.060 4.060 24 C -0.124 4.124 25 C 0.065 3.935 26 F -0.132 7.132 27 C 0.060 3.940 28 F -0.133 7.133 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.014 0.986 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 13.958 -9.835 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.124 0.876 4 C 0.297 3.703 5 O -0.395 6.395 6 N -0.371 5.371 7 C 0.018 3.982 8 H 0.102 0.898 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.018 3.982 12 N -0.319 5.319 13 C -0.482 4.482 14 H 0.074 0.926 15 C -0.220 4.220 16 N -0.552 5.552 17 Si 0.890 3.110 18 H -0.220 1.220 19 H -0.219 1.219 20 H -0.210 1.210 21 C 0.020 3.980 22 C -0.047 4.047 23 C -0.078 4.078 24 C -0.143 4.143 25 C 0.045 3.955 26 F -0.111 7.111 27 C 0.040 3.960 28 F -0.111 7.111 29 C -0.138 4.138 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.032 0.968 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.142 11.795 -10.870 16.081 hybrid contribution 0.283 1.867 0.700 2.013 sum 1.425 13.662 -10.171 17.091 Atomic orbital electron populations 1.21826 0.91429 1.03844 1.02944 1.20314 0.98153 1.00135 0.90672 0.87628 1.20264 0.80819 0.84919 0.84334 1.90791 1.37080 1.25346 1.86328 1.46067 1.53546 1.31699 1.05816 1.21741 1.00612 0.93614 0.82281 0.89757 1.21668 1.00801 0.97361 0.95535 1.22000 1.00657 0.98371 0.96100 1.20951 0.95408 0.91039 0.90792 1.44030 1.80557 1.04132 1.03158 1.19940 1.22105 0.81991 1.24122 0.92592 1.25800 0.94720 1.03009 0.98472 1.70793 1.12300 1.25820 1.46272 0.83595 0.75618 0.75498 0.76262 1.21967 1.21885 1.21043 1.21163 0.92943 0.93595 0.90267 1.19218 0.96784 0.94176 0.94523 1.21013 0.97922 0.93453 0.95408 1.21112 0.98010 1.01361 0.93787 1.17711 1.00981 0.89997 0.86795 1.91513 1.87537 1.81459 1.50543 1.17528 0.97658 0.89827 0.90957 1.91510 1.72449 1.80542 1.66620 1.20861 0.98934 1.01151 0.92866 0.91323 0.91188 0.91170 0.77388 0.92251 0.92830 0.92480 0.92023 0.96538 0.92463 0.92216 0.89573 0.96789 0.83914 0.83484 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.90 37.16 0.33 -0.92 16 2 C -0.07 -0.75 2.90 -92.93 -0.27 -1.02 16 3 H 0.11 0.81 7.87 -51.93 -0.41 0.40 16 4 C 0.51 7.78 6.98 -10.99 -0.08 7.70 16 5 O -0.52 -10.52 14.75 5.56 0.08 -10.44 16 6 N -0.72 -10.23 4.97 -53.91 -0.27 -10.50 16 7 C 0.12 2.22 2.59 -68.04 -0.18 2.05 16 8 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 9 C -0.12 -1.73 5.36 -26.69 -0.14 -1.87 16 10 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 11 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 12 N -0.59 -14.71 2.86 -172.59 -0.49 -15.21 16 13 C -0.35 -9.90 9.49 -15.06 -0.14 -10.04 16 14 H 0.06 1.58 7.94 -52.48 -0.42 1.16 16 15 C -0.02 -0.50 4.69 -17.43 -0.08 -0.59 16 16 N -0.91 -27.19 12.41 55.49 0.69 -26.50 16 17 Si 1.06 25.87 29.99 -169.99 -5.10 20.77 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.15 3.37 4.24 -3.94 -0.02 3.35 16 22 C -0.05 -0.55 4.40 -104.63 -0.46 -1.01 16 23 C -0.06 -0.78 7.92 -39.58 -0.31 -1.09 16 24 C -0.12 -1.54 10.02 -39.52 -0.40 -1.93 16 25 C 0.07 0.85 7.31 -39.36 -0.29 0.57 16 26 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 27 C 0.06 0.76 7.31 -39.36 -0.29 0.47 16 28 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 29 C -0.12 -1.32 9.65 -39.53 -0.38 -1.70 16 30 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.73 7.40 -51.93 -0.38 0.34 16 33 H 0.39 4.13 8.02 -40.82 -0.33 3.80 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 40 H 0.27 7.97 6.71 -40.82 -0.27 7.70 16 41 H 0.09 2.34 6.30 -51.93 -0.33 2.01 16 42 H 0.01 0.32 7.87 -51.93 -0.41 -0.08 16 43 H 0.14 1.96 7.51 -52.49 -0.39 1.57 16 44 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.14 1.20 7.94 -52.48 -0.42 0.78 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -33.42 372.57 -8.60 -42.02 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.31 Total: 3.15 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.89 Total: -5.45 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.07 Total: -52.21 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.10 Total: 20.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.42 -8.60 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009590045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.231 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds