Wall clock time and date at job start Tue Mar 31 2020 21:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46505 * 119.99832 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.08998 * 110.88521 * 359.29332 * 8 6 4 10 10 C 1.55154 * 111.00610 * 123.17529 * 8 6 4 11 11 C 1.54325 * 102.94253 * 153.57416 * 10 8 6 12 12 N 1.47019 * 107.27334 * 337.81037 * 11 10 8 13 13 C 1.36935 * 125.65022 * 178.90759 * 12 11 10 14 14 H 1.08002 * 119.99645 * 180.02562 * 13 12 11 15 15 C 1.38808 * 119.99989 * 0.02562 * 13 12 11 16 16 N 1.31620 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99962 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47617 * 119.99864 * 17 15 13 20 20 H 1.48499 * 109.47159 * 239.99892 * 17 15 13 21 21 C 1.47476 * 108.72110 * 358.97090 * 12 11 10 22 22 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 23 23 C 1.38419 * 120.02148 * 299.72810 * 22 2 1 24 24 F 1.35099 * 120.01500 * 359.97438 * 23 22 2 25 25 C 1.38477 * 119.97202 * 179.69823 * 23 22 2 26 26 C 1.38213 * 120.02229 * 0.59793 * 25 23 22 27 27 C 1.38204 * 120.05285 * 359.67821 * 26 25 23 28 28 C 1.38421 * 120.02651 * 120.00137 * 22 2 1 29 29 F 1.35097 * 120.00937 * 359.97438 * 28 22 2 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08999 * 109.47333 * 89.99805 * 7 6 4 34 34 H 1.08997 * 109.47024 * 210.00620 * 7 6 4 35 35 H 1.09000 * 109.46875 * 330.00379 * 7 6 4 36 36 H 1.08995 * 110.72127 * 271.93992 * 10 8 6 37 37 H 1.09005 * 110.71886 * 35.03706 * 10 8 6 38 38 H 1.09002 * 109.88044 * 97.22627 * 11 10 8 39 39 H 1.09002 * 109.88566 * 218.38931 * 11 10 8 40 40 H 0.96998 * 119.99657 * 180.02562 * 16 15 13 41 41 H 1.08999 * 110.34881 * 265.25631 * 21 12 11 42 42 H 1.08995 * 110.40287 * 142.91646 * 21 12 11 43 43 H 1.07996 * 119.99125 * 180.27831 * 25 23 22 44 44 H 1.08002 * 119.97255 * 179.70262 * 26 25 23 45 45 H 1.07998 * 119.99169 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9415 2.5890 8 6 2.1954 -0.9402 3.6508 9 1 2.7951 -1.8093 3.3802 10 6 2.9967 0.0264 4.5623 11 6 2.8262 -0.5984 5.9631 12 7 1.6191 -1.4368 5.9232 13 6 1.1309 -2.1829 6.9624 14 1 0.2327 -2.7683 6.8317 15 6 1.7904 -2.1870 8.1838 16 7 2.8853 -1.4740 8.3429 17 14 1.1248 -3.2054 9.6013 18 1 -0.1080 -3.9108 9.1679 19 1 2.1450 -4.2010 10.0174 20 1 0.8079 -2.3136 10.7456 21 6 1.0216 -1.3425 4.5782 22 6 2.0324 -0.7104 -1.2304 23 6 1.7030 -2.0373 -1.4471 24 9 0.9313 -2.6963 -0.5553 25 6 2.1600 -2.6873 -2.5812 26 6 2.9550 -2.0152 -3.4904 27 6 3.2893 -0.6921 -3.2722 28 6 2.8283 -0.0382 -2.1419 29 9 3.1547 1.2553 -1.9291 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1833 0.6440 2.6220 34 1 1.1227 1.4667 3.5086 35 1 1.0287 1.6002 1.7362 36 1 4.0476 0.0460 4.2741 37 1 2.5705 1.0292 4.5299 38 1 3.6951 -1.2109 6.2040 39 1 2.7067 0.1883 6.7080 40 1 3.3463 -1.4771 9.1963 41 1 0.2453 -0.5776 4.5611 42 1 0.6124 -2.3064 4.2758 43 1 1.8995 -3.7212 -2.7528 44 1 3.3150 -2.5243 -4.3722 45 1 3.9109 -0.1680 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033271230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:23 Heat of formation + Delta-G solvation = -58.040761 kcal Electronic energy + Delta-G solvation = -30177.044029 eV Core-core repulsion = 25831.955803 eV Total energy + Delta-G solvation = -4345.088226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.28007 -49.05689 -40.32908 -38.90142 -37.33511 -35.09077 -34.27562 -32.06046 -30.53015 -29.92061 -29.07098 -27.51385 -26.83979 -24.96825 -24.31554 -23.10256 -22.55259 -20.32233 -20.09154 -18.87836 -18.31928 -17.88932 -16.97855 -16.68816 -16.50264 -16.02969 -15.78418 -15.61500 -15.40766 -15.06029 -14.67690 -14.60666 -14.38459 -13.99387 -13.81239 -13.49424 -12.97930 -12.89526 -12.67397 -12.62429 -12.32537 -12.29762 -12.17616 -12.13953 -11.92423 -11.71491 -11.54265 -11.16001 -10.92931 -10.83648 -10.72545 -10.26814 -10.06278 -9.82576 -9.70972 -9.58657 -9.10703 -8.95223 -8.62592 -8.34700 -6.83943 -5.71075 -3.05169 0.69682 0.76625 2.72502 2.97808 3.23660 3.40871 3.46464 3.48901 3.67825 4.06661 4.17921 4.32514 4.50379 4.51300 4.61021 4.85431 4.91059 4.96557 5.14257 5.31903 5.36457 5.44778 5.47138 5.51063 5.53325 5.62415 5.65249 5.66005 5.72382 5.75478 5.78399 5.87892 5.89037 5.99122 6.20998 6.29830 6.50190 6.51479 6.59401 6.70474 6.96088 7.54240 7.57592 7.61292 7.82327 8.24022 8.30909 9.21588 9.81489 10.46546 11.40595 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.002706 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.675499 B =10344.391755 C =10743.893363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 H 0.111 0.889 4 C 0.520 3.480 5 O -0.533 6.533 6 N -0.597 5.597 7 C 0.071 3.929 8 C 0.124 3.876 9 H 0.106 0.894 10 C -0.153 4.153 11 C 0.180 3.820 12 N -0.603 5.603 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.132 3.868 22 C -0.138 4.138 23 C 0.165 3.835 24 F -0.119 7.119 25 C -0.169 4.169 26 C -0.062 4.062 27 C -0.170 4.170 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.022 0.978 42 H 0.041 0.959 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 5.742 -25.376 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 H 0.129 0.871 4 C 0.306 3.694 5 O -0.409 6.409 6 N -0.329 5.329 7 C -0.072 4.072 8 C 0.020 3.980 9 H 0.124 0.876 10 C -0.192 4.192 11 C 0.055 3.945 12 N -0.330 5.330 13 C -0.355 4.355 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.005 3.995 22 C -0.141 4.141 23 C 0.145 3.855 24 F -0.097 7.097 25 C -0.188 4.188 26 C -0.080 4.080 27 C -0.188 4.188 28 C 0.115 3.885 29 F -0.109 7.109 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.322 5.192 -25.136 25.772 hybrid contribution -0.308 -0.257 1.063 1.136 sum -2.630 4.935 -24.074 24.715 Atomic orbital electron populations 1.22131 0.91423 1.04247 1.03852 1.20143 0.98431 1.00524 0.90022 0.87078 1.20207 0.80413 0.84593 0.84146 1.90702 1.37941 1.26108 1.86178 1.47703 1.50745 1.28809 1.05635 1.21982 0.94729 0.87326 1.03144 1.22467 0.96873 0.95867 0.82780 0.87597 1.23254 0.99185 0.98406 0.98404 1.21138 0.90130 0.93635 0.89591 1.44409 1.27619 1.53887 1.07091 1.19102 1.07147 1.20287 0.88993 0.90336 1.24812 0.97554 1.00229 0.97859 1.69970 1.19047 1.43892 1.24028 0.86025 0.77957 0.79375 0.82289 1.20485 1.21722 1.21757 1.21740 0.93393 0.98232 0.86129 1.19391 1.02704 0.94210 0.97760 1.17099 0.91868 0.88990 0.87502 1.91541 1.71568 1.80121 1.66500 1.21220 1.01539 1.01692 0.94319 1.20823 0.95332 0.93183 0.98682 1.21117 1.03923 0.96064 0.97743 1.17144 0.97159 0.79068 0.95168 1.91505 1.90756 1.33905 1.94752 0.91110 0.89881 0.91363 0.91977 0.90187 0.91280 0.91961 0.92036 0.93316 0.93649 0.93773 0.96059 0.94108 0.84001 0.83986 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.62 37.16 0.32 -1.24 16 2 C -0.07 -0.84 1.99 -92.92 -0.18 -1.02 16 3 H 0.11 1.17 6.39 -51.93 -0.33 0.84 16 4 C 0.52 8.27 6.51 -10.98 -0.07 8.20 16 5 O -0.53 -10.46 13.91 5.56 0.08 -10.38 16 6 N -0.60 -9.26 2.91 -171.48 -0.50 -9.76 16 7 C 0.07 0.82 7.55 59.85 0.45 1.27 16 8 C 0.12 2.37 3.45 -65.78 -0.23 2.14 16 9 H 0.11 2.29 7.01 -51.93 -0.36 1.93 16 10 C -0.15 -2.95 6.51 -24.90 -0.16 -3.11 16 11 C 0.18 4.43 5.37 -3.06 -0.02 4.41 16 12 N -0.60 -15.67 3.40 -170.03 -0.58 -16.25 16 13 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 16 N -0.92 -27.30 10.31 55.49 0.57 -26.72 16 17 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 C 0.13 2.83 6.81 -2.50 -0.02 2.81 16 22 C -0.14 -1.69 4.41 -104.49 -0.46 -2.15 16 23 C 0.17 2.06 6.13 -39.43 -0.24 1.82 16 24 F -0.12 -1.73 13.80 2.25 0.03 -1.70 16 25 C -0.17 -1.61 10.03 -39.50 -0.40 -2.00 16 26 C -0.06 -0.47 10.04 -39.60 -0.40 -0.86 16 27 C -0.17 -1.42 10.02 -39.51 -0.40 -1.82 16 28 C 0.13 1.45 7.25 -39.43 -0.29 1.16 16 29 F -0.13 -1.43 16.19 2.25 0.04 -1.39 16 30 H 0.07 0.79 6.33 -51.93 -0.33 0.46 16 31 H 0.08 0.72 4.53 -51.93 -0.24 0.48 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 34 H 0.08 0.96 6.20 -51.93 -0.32 0.64 16 35 H 0.07 0.61 6.01 -51.93 -0.31 0.29 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.06 6.20 -51.93 -0.32 0.74 16 38 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 39 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 41 H 0.02 0.44 7.11 -51.93 -0.37 0.07 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -33.70 358.15 -8.12 -41.82 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.80 Total: -1.02 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.33 Total: 2.68 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.50 Total: -52.73 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.09 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.70 -8.12 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033271230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.218 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds