Wall clock time and date at job start Tue Mar 31 2020 21:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46505 * 119.99832 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.08998 * 110.88521 * 359.29332 * 8 6 4 10 10 C 1.55154 * 111.00610 * 123.17529 * 8 6 4 11 11 C 1.54325 * 102.94253 * 153.57416 * 10 8 6 12 12 N 1.47019 * 107.27334 * 337.81037 * 11 10 8 13 13 C 1.36935 * 125.65022 * 178.90759 * 12 11 10 14 14 H 1.08002 * 119.99645 * 180.02562 * 13 12 11 15 15 C 1.38808 * 119.99989 * 0.02562 * 13 12 11 16 16 N 1.31620 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99962 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47617 * 119.99864 * 17 15 13 20 20 H 1.48499 * 109.47159 * 239.99892 * 17 15 13 21 21 C 1.47476 * 108.72110 * 358.97090 * 12 11 10 22 22 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 23 23 C 1.38419 * 120.02148 * 299.72810 * 22 2 1 24 24 F 1.35099 * 120.01500 * 359.97438 * 23 22 2 25 25 C 1.38477 * 119.97202 * 179.69823 * 23 22 2 26 26 C 1.38213 * 120.02229 * 0.59793 * 25 23 22 27 27 C 1.38204 * 120.05285 * 359.67821 * 26 25 23 28 28 C 1.38421 * 120.02651 * 120.00137 * 22 2 1 29 29 F 1.35097 * 120.00937 * 359.97438 * 28 22 2 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08999 * 109.47333 * 89.99805 * 7 6 4 34 34 H 1.08997 * 109.47024 * 210.00620 * 7 6 4 35 35 H 1.09000 * 109.46875 * 330.00379 * 7 6 4 36 36 H 1.08995 * 110.72127 * 271.93992 * 10 8 6 37 37 H 1.09005 * 110.71886 * 35.03706 * 10 8 6 38 38 H 1.09002 * 109.88044 * 97.22627 * 11 10 8 39 39 H 1.09002 * 109.88566 * 218.38931 * 11 10 8 40 40 H 0.96998 * 119.99657 * 180.02562 * 16 15 13 41 41 H 1.08999 * 110.34881 * 265.25631 * 21 12 11 42 42 H 1.08995 * 110.40287 * 142.91646 * 21 12 11 43 43 H 1.07996 * 119.99125 * 180.27831 * 25 23 22 44 44 H 1.08002 * 119.97255 * 179.70262 * 26 25 23 45 45 H 1.07998 * 119.99169 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9415 2.5890 8 6 2.1954 -0.9402 3.6508 9 1 2.7951 -1.8093 3.3802 10 6 2.9967 0.0264 4.5623 11 6 2.8262 -0.5984 5.9631 12 7 1.6191 -1.4368 5.9232 13 6 1.1309 -2.1829 6.9624 14 1 0.2327 -2.7683 6.8317 15 6 1.7904 -2.1870 8.1838 16 7 2.8853 -1.4740 8.3429 17 14 1.1248 -3.2054 9.6013 18 1 -0.1080 -3.9108 9.1679 19 1 2.1450 -4.2010 10.0174 20 1 0.8079 -2.3136 10.7456 21 6 1.0216 -1.3425 4.5782 22 6 2.0324 -0.7104 -1.2304 23 6 1.7030 -2.0373 -1.4471 24 9 0.9313 -2.6963 -0.5553 25 6 2.1600 -2.6873 -2.5812 26 6 2.9550 -2.0152 -3.4904 27 6 3.2893 -0.6921 -3.2722 28 6 2.8283 -0.0382 -2.1419 29 9 3.1547 1.2553 -1.9291 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1833 0.6440 2.6220 34 1 1.1227 1.4667 3.5086 35 1 1.0287 1.6002 1.7362 36 1 4.0476 0.0460 4.2741 37 1 2.5705 1.0292 4.5299 38 1 3.6951 -1.2109 6.2040 39 1 2.7067 0.1883 6.7080 40 1 3.3463 -1.4771 9.1963 41 1 0.2453 -0.5776 4.5611 42 1 0.6124 -2.3064 4.2758 43 1 1.8995 -3.7212 -2.7528 44 1 3.3150 -2.5243 -4.3722 45 1 3.9109 -0.1680 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033271230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:22 Heat of formation + Delta-G solvation = -78.003720 kcal Electronic energy + Delta-G solvation = -30177.909688 eV Core-core repulsion = 25831.955803 eV Total energy + Delta-G solvation = -4345.953885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.05714 -49.99662 -41.52285 -39.81311 -38.90781 -36.45645 -35.41251 -33.92692 -31.28291 -31.22785 -30.50387 -29.07676 -28.01406 -26.59529 -25.55448 -23.87417 -23.58194 -22.10338 -21.57844 -20.16968 -19.12304 -18.96055 -18.85304 -17.87730 -17.48005 -16.86257 -16.81681 -16.62757 -16.53353 -16.34952 -16.16461 -15.92136 -15.52600 -15.34932 -14.87805 -14.54929 -14.43619 -14.20826 -14.04207 -13.76053 -13.66468 -13.48978 -13.37516 -13.09570 -12.94489 -12.88212 -12.78369 -12.75756 -12.44860 -12.36278 -12.08970 -12.00718 -11.87893 -11.81820 -11.50926 -10.84006 -10.75662 -9.89424 -9.70909 -9.69013 -8.94303 -7.88198 -5.25199 -0.03677 0.02218 1.44485 1.46172 1.51915 1.56527 1.85556 2.40903 2.48613 2.92194 3.23428 3.30578 3.37523 3.48436 3.63165 3.71593 3.86954 3.89799 3.96860 4.05991 4.14941 4.17674 4.25035 4.26097 4.52862 4.56456 4.60168 4.67508 4.73792 4.78980 4.82816 4.87845 4.91316 4.97810 5.03642 5.08831 5.10852 5.21865 5.22741 5.39975 5.51109 5.58832 5.69142 5.80147 6.14824 6.35997 7.05431 7.07966 7.71267 8.35315 9.22216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.002706 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.675499 B =10344.391755 C =10743.893363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.062 4.062 3 H 0.129 0.871 4 C 0.514 3.486 5 O -0.577 6.577 6 N -0.596 5.596 7 C 0.062 3.938 8 C 0.140 3.860 9 H 0.074 0.926 10 C -0.134 4.134 11 C 0.189 3.811 12 N -0.625 5.625 13 C -0.244 4.244 14 H 0.082 0.918 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.981 3.019 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.288 1.288 21 C 0.135 3.865 22 C -0.159 4.159 23 C 0.130 3.870 24 F -0.141 7.141 25 C -0.172 4.172 26 C -0.050 4.050 27 C -0.162 4.162 28 C 0.119 3.881 29 F -0.134 7.134 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.009 0.991 39 H 0.019 0.981 40 H 0.248 0.752 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.157 0.843 44 H 0.183 0.817 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 6.864 -27.930 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 H 0.147 0.853 4 C 0.303 3.697 5 O -0.457 6.457 6 N -0.327 5.327 7 C -0.079 4.079 8 C 0.035 3.965 9 H 0.093 0.907 10 C -0.173 4.173 11 C 0.064 3.936 12 N -0.352 5.352 13 C -0.373 4.373 14 H 0.100 0.900 15 C -0.258 4.258 16 N -0.599 5.599 17 Si 0.809 3.191 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.215 1.215 21 C 0.008 3.992 22 C -0.161 4.161 23 C 0.111 3.889 24 F -0.120 7.120 25 C -0.191 4.191 26 C -0.068 4.068 27 C -0.180 4.180 28 C 0.100 3.900 29 F -0.113 7.113 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.175 0.825 44 H 0.200 0.800 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.155 6.345 -27.729 28.620 hybrid contribution -0.040 -0.632 1.747 1.858 sum -3.195 5.713 -25.982 26.794 Atomic orbital electron populations 1.22135 0.89770 1.03606 1.05614 1.20157 0.99678 1.00601 0.87866 0.85282 1.20995 0.79489 0.84134 0.85092 1.90676 1.39932 1.28200 1.86853 1.47714 1.51079 1.29609 1.04324 1.22322 0.94753 0.86140 1.04720 1.21914 0.95445 0.95242 0.83943 0.90728 1.23058 1.00121 0.99317 0.94798 1.20865 0.88383 0.92186 0.92155 1.44686 1.28220 1.53877 1.08398 1.19474 1.07344 1.20501 0.89966 0.90033 1.25683 0.98010 1.01651 1.00435 1.70184 1.20203 1.45247 1.24277 0.84971 0.77592 0.77669 0.78845 1.19019 1.22005 1.21475 1.21834 0.94444 0.98342 0.84544 1.19509 1.03812 0.94477 0.98305 1.17533 0.93248 0.89668 0.88491 1.91477 1.72409 1.80584 1.67519 1.21560 1.01279 1.02557 0.93678 1.21301 0.93590 0.92829 0.99060 1.21543 1.03005 0.96378 0.97084 1.17364 0.97555 0.79148 0.95973 1.91491 1.90810 1.34076 1.94877 0.92962 0.88537 0.89098 0.90519 0.90251 0.87833 0.91084 0.89125 0.97305 0.96315 0.94261 0.93802 0.95209 0.82519 0.79993 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.62 71.98 0.62 -2.11 16 2 C -0.06 -1.40 1.99 -12.28 -0.02 -1.42 16 3 H 0.13 2.39 6.39 -2.39 -0.02 2.37 16 4 C 0.51 16.19 6.51 87.66 0.57 16.76 16 5 O -0.58 -23.32 13.91 -3.02 -0.04 -23.36 16 6 N -0.60 -17.89 2.91 -814.84 -2.37 -20.26 16 7 C 0.06 1.25 7.55 127.77 0.97 2.22 16 8 C 0.14 5.40 3.45 46.38 0.16 5.56 16 9 H 0.07 3.38 7.01 -2.39 -0.02 3.36 16 10 C -0.13 -5.15 6.51 31.78 0.21 -4.94 16 11 C 0.19 9.66 5.37 86.73 0.47 10.12 16 12 N -0.62 -33.32 3.40 -691.86 -2.35 -35.67 16 13 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 14 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 15 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 16 N -0.95 -58.18 10.31 21.65 0.22 -57.95 16 17 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 C 0.13 5.80 6.81 86.85 0.59 6.39 16 22 C -0.16 -3.73 4.41 -19.78 -0.09 -3.81 16 23 C 0.13 3.22 6.13 22.37 0.14 3.36 16 24 F -0.14 -4.26 13.80 44.97 0.62 -3.64 16 25 C -0.17 -3.02 10.03 22.32 0.22 -2.79 16 26 C -0.05 -0.59 10.04 22.26 0.22 -0.37 16 27 C -0.16 -2.20 10.02 22.32 0.22 -1.98 16 28 C 0.12 2.34 7.25 22.37 0.16 2.50 16 29 F -0.13 -2.65 16.19 44.97 0.73 -1.92 16 30 H 0.05 1.14 6.33 -2.39 -0.02 1.12 16 31 H 0.10 1.39 4.53 -2.39 -0.01 1.38 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.37 6.89 -2.39 -0.02 1.35 16 34 H 0.08 1.66 6.20 -2.39 -0.01 1.64 16 35 H 0.10 1.41 6.01 -2.39 -0.01 1.40 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.09 2.96 6.20 -2.38 -0.01 2.95 16 38 H 0.01 0.50 7.38 -2.39 -0.02 0.49 16 39 H 0.02 1.04 7.51 -2.39 -0.02 1.02 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 41 H 0.04 1.72 7.11 -2.39 -0.02 1.70 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 45 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -77.77 358.15 5.63 -72.13 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.03 Total: 9.04 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.77 Total: 12.94 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.50 Total: -113.88 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 1.35 Total: -5.57 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -77.77 5.63 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033271230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.869 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds