Wall clock time and date at job start Tue Mar 31 2020 21:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47255 * 2 1 4 4 C 1.50694 * 109.47387 * 239.99293 * 2 1 3 5 5 O 1.21281 * 120.00366 * 254.86503 * 4 2 1 6 6 N 1.34781 * 119.99993 * 74.86713 * 4 2 1 7 7 C 1.46497 * 120.00147 * 184.69515 * 6 4 2 8 8 C 1.46499 * 119.99563 * 4.69232 * 6 4 2 9 9 H 1.09000 * 110.64409 * 357.15854 * 8 6 4 10 10 C 1.55153 * 110.71975 * 120.49770 * 8 6 4 11 11 C 1.54914 * 101.58274 * 153.86045 * 10 8 6 12 12 N 1.47418 * 104.83146 * 322.99335 * 11 10 8 13 13 C 1.36940 * 125.64445 * 204.16766 * 12 11 10 14 14 H 1.08001 * 120.00047 * 179.97438 * 13 12 11 15 15 C 1.38809 * 120.00297 * 359.94911 * 13 12 11 16 16 N 1.31624 * 120.00028 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00281 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47253 * 89.99974 * 17 15 13 19 19 H 1.48502 * 109.47279 * 210.00416 * 17 15 13 20 20 H 1.48507 * 109.47155 * 330.00069 * 17 15 13 21 21 C 1.47018 * 108.70784 * 24.12191 * 12 11 10 22 22 C 1.50706 * 109.47019 * 119.99614 * 2 1 3 23 23 C 1.38229 * 119.98883 * 59.72149 * 22 2 1 24 24 C 1.38188 * 120.05304 * 179.76944 * 23 22 2 25 25 C 1.38494 * 120.01895 * 0.50983 * 24 23 22 26 26 F 1.35103 * 120.00955 * 179.76526 * 25 24 23 27 27 C 1.38401 * 119.97845 * 359.74976 * 25 24 23 28 28 C 1.38436 * 119.94840 * 359.97438 * 27 25 24 29 29 F 1.35097 * 120.01134 * 180.02562 * 28 27 25 30 30 H 1.09007 * 109.46995 * 172.29393 * 1 2 3 31 31 H 1.08993 * 109.47547 * 292.29532 * 1 2 3 32 32 H 1.09000 * 109.46964 * 52.30244 * 1 2 3 33 33 H 1.08999 * 109.47544 * 84.95245 * 7 6 4 34 34 H 1.09003 * 109.46680 * 204.95373 * 7 6 4 35 35 H 1.09004 * 109.46833 * 324.95094 * 7 6 4 36 36 H 1.09004 * 111.00561 * 271.93577 * 10 8 6 37 37 H 1.08998 * 111.00845 * 35.78561 * 10 8 6 38 38 H 1.09001 * 110.36352 * 204.14695 * 11 10 8 39 39 H 1.08999 * 110.45400 * 81.87844 * 11 10 8 40 40 H 0.96996 * 120.00555 * 179.97438 * 16 15 13 41 41 H 1.08994 * 109.88682 * 239.52952 * 21 12 11 42 42 H 1.09002 * 110.00993 * 118.43254 * 21 12 11 43 43 H 1.08002 * 119.97366 * 0.02562 * 23 22 2 44 44 H 1.07996 * 119.98757 * 180.25782 * 24 23 22 45 45 H 1.07999 * 120.02436 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4931 -1.8287 -1.1392 6 7 1.9698 -0.1033 -2.4320 7 6 2.3619 -0.8308 -3.6416 8 6 1.5095 1.2841 -2.5284 9 1 1.2111 1.6589 -1.5493 10 6 2.6074 2.1845 -3.1539 11 6 1.7596 3.3216 -3.7768 12 7 0.5486 2.6534 -4.2868 13 6 -0.2553 3.1180 -5.2933 14 1 -1.1238 2.5518 -5.5958 15 6 0.0457 4.3171 -5.9246 16 7 1.1041 5.0073 -5.5560 17 14 -1.0513 4.9513 -7.2970 18 1 -2.1185 5.8087 -6.7216 19 1 -0.2390 5.7463 -8.2527 20 1 -1.6686 3.8029 -8.0080 21 6 0.3475 1.4050 -3.5368 22 6 2.0323 -0.7104 1.2306 23 6 1.6935 -2.0320 1.4521 24 6 2.1573 -2.6861 2.5776 25 6 2.9536 -2.0147 3.4903 26 9 3.4030 -2.6529 4.5930 27 6 3.2891 -0.6897 3.2723 28 6 2.8286 -0.0373 2.1415 29 9 3.1557 1.2559 1.9272 30 1 -0.3633 -1.0185 -0.1378 31 1 -0.3634 0.3898 0.9507 32 1 -0.3633 0.6284 -0.8131 33 1 1.5150 -1.4116 -4.0069 34 1 2.6730 -0.1206 -4.4078 35 1 3.1895 -1.5013 -3.4100 36 1 3.2783 2.5723 -2.3873 37 1 3.1635 1.6464 -3.9215 38 1 2.3034 3.7965 -4.5933 39 1 1.4953 4.0588 -3.0186 40 1 1.3148 5.8450 -5.9973 41 1 0.3597 0.5559 -4.2200 42 1 -0.6032 1.4387 -3.0045 43 1 1.0692 -2.5552 0.7429 44 1 1.8953 -3.7199 2.7475 45 1 3.9104 -0.1656 3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033678552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:51 Heat of formation + Delta-G solvation = -79.824021 kcal Electronic energy + Delta-G solvation = -29866.259650 eV Core-core repulsion = 25520.226831 eV Total energy + Delta-G solvation = -4346.032820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.09467 -50.02445 -41.64992 -39.88617 -38.92869 -36.17947 -35.21318 -33.84940 -31.83127 -31.03938 -30.38838 -29.03558 -28.18280 -26.41262 -25.44865 -24.16586 -23.07168 -22.13040 -21.98570 -19.85545 -19.28800 -18.94915 -18.79783 -17.83510 -17.40949 -17.02648 -16.80922 -16.63143 -16.39445 -16.30461 -16.10619 -15.92680 -15.51395 -15.49936 -14.98409 -14.64241 -14.40860 -14.25083 -13.97572 -13.74907 -13.49322 -13.42997 -13.24048 -13.01331 -12.97791 -12.93663 -12.77091 -12.68763 -12.43122 -12.28872 -12.22127 -12.01580 -11.99849 -11.78112 -11.42825 -10.81295 -10.71930 -10.06042 -9.69377 -9.67163 -8.87536 -7.75704 -5.20153 -0.13515 0.01788 1.49226 1.50293 1.50878 1.58969 1.87618 2.36278 2.52040 2.81554 3.25359 3.32432 3.36136 3.43576 3.60872 3.73669 3.82102 3.89362 3.90296 4.01866 4.10705 4.18334 4.26797 4.40468 4.60226 4.60420 4.65437 4.67905 4.75465 4.81284 4.85824 4.88213 4.90830 4.96654 5.02257 5.05136 5.11678 5.21767 5.26461 5.42652 5.50187 5.62534 5.72970 5.81960 6.30456 6.35538 7.04837 7.12257 7.79103 8.41103 9.25706 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.002571 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.445229 B =10888.684626 C =11242.791496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 H 0.109 0.891 4 C 0.523 3.477 5 O -0.562 6.562 6 N -0.596 5.596 7 C 0.086 3.914 8 C 0.135 3.865 9 H 0.117 0.883 10 C -0.141 4.141 11 C 0.156 3.844 12 N -0.622 5.622 13 C -0.234 4.234 14 H 0.081 0.919 15 C -0.064 4.064 16 N -0.948 5.948 17 Si 0.976 3.024 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.270 1.270 21 C 0.128 3.872 22 C -0.120 4.120 23 C -0.027 4.027 24 C -0.158 4.158 25 C 0.121 3.879 26 F -0.135 7.135 27 C -0.194 4.194 28 C 0.122 3.878 29 F -0.135 7.135 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.075 0.925 39 H -0.003 1.003 40 H 0.247 0.753 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.150 0.850 44 H 0.165 0.835 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 -13.725 16.707 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.093 4.093 3 H 0.126 0.874 4 C 0.312 3.688 5 O -0.441 6.441 6 N -0.326 5.326 7 C -0.056 4.056 8 C 0.030 3.970 9 H 0.134 0.866 10 C -0.181 4.181 11 C 0.031 3.969 12 N -0.349 5.349 13 C -0.363 4.363 14 H 0.099 0.901 15 C -0.257 4.257 16 N -0.597 5.597 17 Si 0.805 3.195 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.195 1.195 21 C 0.002 3.998 22 C -0.121 4.121 23 C -0.046 4.046 24 C -0.177 4.177 25 C 0.102 3.898 26 F -0.114 7.114 27 C -0.214 4.214 28 C 0.103 3.897 29 F -0.113 7.113 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.015 0.985 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.167 0.833 44 H 0.182 0.818 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.151 -14.147 16.623 21.934 hybrid contribution -0.180 1.003 -0.818 1.307 sum 1.971 -13.144 15.804 20.650 Atomic orbital electron populations 1.21847 0.89505 1.03844 1.04369 1.20231 0.99669 1.00292 0.89136 0.87354 1.20616 0.77643 0.85980 0.84544 1.90658 1.46743 1.20530 1.86161 1.47815 1.64514 1.13211 1.07106 1.21619 1.00737 0.96793 0.86454 1.22249 0.94353 0.80105 1.00251 0.86571 1.23256 0.97355 0.97285 1.00179 1.21696 0.86896 0.91828 0.96514 1.44664 1.28769 1.21913 1.39508 1.19398 1.04935 1.03226 1.08785 0.90080 1.25564 0.99785 0.97853 1.02466 1.70018 1.28600 1.16113 1.45000 0.85106 0.77631 0.78044 0.78707 1.21467 1.22220 1.19518 1.21654 0.96020 0.89094 0.93036 1.19561 1.00692 0.95935 0.95951 1.20843 0.96527 0.91934 0.95250 1.21431 0.99533 1.02526 0.94215 1.17399 0.97256 0.90344 0.84802 1.91524 1.87456 1.81547 1.50828 1.21088 1.05901 0.94826 0.99560 1.17225 0.97980 0.79093 0.95439 1.91512 1.90930 1.34236 1.94666 0.90945 0.89411 0.91184 0.92119 0.90869 0.90827 0.89774 0.91363 0.90751 0.98528 0.94333 0.94933 0.94782 0.83284 0.81780 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.64 71.98 0.62 -1.88 16 2 C -0.07 -1.59 2.01 -12.29 -0.02 -1.61 16 3 H 0.11 2.41 5.76 -2.39 -0.01 2.39 16 4 C 0.52 14.05 6.82 87.65 0.60 14.65 16 5 O -0.56 -17.37 14.33 -3.03 -0.04 -17.41 16 6 N -0.60 -16.43 2.89 -815.96 -2.35 -18.78 16 7 C 0.09 2.29 8.97 127.77 1.15 3.44 16 8 C 0.13 4.06 2.55 46.18 0.12 4.17 16 9 H 0.12 3.13 4.78 -2.39 -0.01 3.11 16 10 C -0.14 -4.84 6.61 31.99 0.21 -4.63 16 11 C 0.16 7.16 5.89 86.86 0.51 7.67 16 12 N -0.62 -29.77 3.39 -692.00 -2.35 -32.12 16 13 C -0.23 -12.47 10.27 84.03 0.86 -11.61 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 15 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 16 N -0.95 -54.36 10.09 21.65 0.22 -54.15 16 17 Si 0.98 44.14 29.55 68.60 2.03 46.17 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.13 4.73 6.87 86.73 0.60 5.32 16 22 C -0.12 -2.56 4.54 -19.81 -0.09 -2.65 16 23 C -0.03 -0.52 7.91 22.26 0.18 -0.34 16 24 C -0.16 -2.63 10.03 22.32 0.22 -2.40 16 25 C 0.12 2.21 7.30 22.37 0.16 2.37 16 26 F -0.14 -2.51 17.27 44.97 0.78 -1.73 16 27 C -0.19 -3.62 10.01 22.36 0.22 -3.40 16 28 C 0.12 2.62 7.24 22.37 0.16 2.78 16 29 F -0.13 -3.13 16.19 44.97 0.73 -2.40 16 30 H 0.07 1.21 7.64 -2.38 -0.02 1.19 16 31 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.07 1.37 6.50 -2.39 -0.02 1.36 16 33 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 34 H 0.07 2.04 6.43 -2.39 -0.02 2.02 16 35 H 0.07 1.92 7.52 -2.38 -0.02 1.90 16 36 H 0.08 2.53 8.14 -2.38 -0.02 2.52 16 37 H 0.07 2.34 6.42 -2.39 -0.02 2.33 16 38 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.03 1.21 6.85 -2.39 -0.02 1.19 16 42 H 0.03 1.22 7.95 -2.39 -0.02 1.20 16 43 H 0.15 2.65 7.26 -2.91 -0.02 2.63 16 44 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -63.50 363.88 5.99 -57.51 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.02 Total: 14.05 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.96 Total: 8.87 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -4.48 Total: -105.05 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.04 Total: -17.41 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 1.50 Total: -4.13 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.50 5.99 -57.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.315 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds