Wall clock time and date at job start Tue Mar 31 2020 21:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47114 * 2 1 4 4 C 1.50701 * 109.47052 * 239.99504 * 2 1 3 5 5 O 1.21283 * 119.99947 * 261.95668 * 4 2 1 6 6 N 1.34771 * 119.99818 * 81.96550 * 4 2 1 7 7 C 1.46500 * 119.99906 * 183.80417 * 6 4 2 8 8 C 1.46501 * 120.00133 * 3.79363 * 6 4 2 9 9 H 1.09001 * 110.88695 * 9.02890 * 8 6 4 10 10 C 1.55155 * 111.00850 * 245.14245 * 8 6 4 11 11 C 1.54321 * 102.94204 * 277.43015 * 10 8 6 12 12 N 1.47024 * 107.27177 * 337.80231 * 11 10 8 13 13 C 1.36940 * 125.64783 * 178.89056 * 12 11 10 14 14 H 1.08001 * 119.99774 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99940 * 0.03635 * 13 12 11 16 16 N 1.31622 * 120.00188 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47124 * 89.99685 * 17 15 13 19 19 H 1.48492 * 109.47377 * 209.99702 * 17 15 13 20 20 H 1.48505 * 109.46953 * 329.99800 * 17 15 13 21 21 C 1.47427 * 108.70442 * 358.94717 * 12 11 10 22 22 C 1.50702 * 109.47088 * 119.99996 * 2 1 3 23 23 C 1.38230 * 119.98968 * 60.26984 * 22 2 1 24 24 C 1.38190 * 120.04938 * 180.27557 * 23 22 2 25 25 C 1.38494 * 120.02781 * 359.70959 * 24 23 22 26 26 F 1.35092 * 120.01664 * 179.97438 * 25 24 23 27 27 C 1.38403 * 119.97001 * 0.02562 * 25 24 23 28 28 C 1.38437 * 119.95435 * 359.97438 * 27 25 24 29 29 F 1.35095 * 120.01568 * 179.97438 * 28 27 25 30 30 H 1.09005 * 109.47142 * 178.40823 * 1 2 3 31 31 H 1.09003 * 109.47166 * 298.40880 * 1 2 3 32 32 H 1.08998 * 109.47059 * 58.40948 * 1 2 3 33 33 H 1.09000 * 109.47315 * 95.29410 * 7 6 4 34 34 H 1.09008 * 109.47252 * 215.29162 * 7 6 4 35 35 H 1.08994 * 109.47211 * 335.29097 * 7 6 4 36 36 H 1.08998 * 110.71802 * 35.79632 * 10 8 6 37 37 H 1.09002 * 110.71630 * 159.06770 * 10 8 6 38 38 H 1.09000 * 109.88477 * 97.22675 * 11 10 8 39 39 H 1.09002 * 109.88207 * 218.23675 * 11 10 8 40 40 H 0.96995 * 119.99948 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.36147 * 265.28590 * 21 12 11 42 42 H 1.08995 * 110.36823 * 142.96390 * 21 12 11 43 43 H 1.07998 * 119.97613 * 359.97438 * 23 22 2 44 44 H 1.07997 * 119.98512 * 179.72528 * 24 23 22 45 45 H 1.08007 * 120.02076 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3730 -1.8726 -1.1630 6 7 2.1031 -0.0546 -2.4056 7 6 2.5118 -0.7670 -3.6187 8 6 1.7711 1.3709 -2.4700 9 1 1.6430 1.7857 -1.4702 10 6 0.5066 1.6088 -3.3370 11 6 1.0691 1.6156 -4.7741 12 7 2.5005 1.9382 -4.6810 13 6 3.3700 2.0215 -5.7357 14 1 4.4076 2.2657 -5.5620 15 6 2.9177 1.7924 -7.0279 16 7 1.6532 1.4946 -7.2394 17 14 4.1036 1.9068 -8.4666 18 1 4.7155 0.5760 -8.7107 19 1 3.3684 2.3437 -9.6806 20 1 5.1696 2.8917 -8.1522 21 6 2.8450 2.1557 -3.2642 22 6 2.0323 -0.7104 1.2305 23 6 1.7028 -2.0354 1.4462 24 6 2.1581 -2.6864 2.5769 25 6 2.9500 -2.0136 3.4925 26 9 3.3945 -2.6501 4.5980 27 6 3.2851 -0.6885 3.2747 28 6 2.8285 -0.0373 2.1416 29 9 3.1543 1.2563 1.9281 30 1 -0.3634 -1.0273 -0.0285 31 1 -0.3634 0.4889 0.9039 32 1 -0.3633 0.5383 -0.8754 33 1 1.6264 -1.0999 -4.1603 34 1 3.0960 -0.0998 -4.2525 35 1 3.1172 -1.6314 -3.3458 36 1 -0.2088 0.7968 -3.2067 37 1 0.0497 2.5690 -3.0972 38 1 0.9391 0.6331 -5.2277 39 1 0.5548 2.3697 -5.3699 40 1 1.3372 1.3341 -8.1424 41 1 2.7966 3.2171 -3.0207 42 1 3.8384 1.7615 -3.0505 43 1 1.0852 -2.5609 0.7329 44 1 1.8964 -3.7204 2.7467 45 1 3.9023 -0.1629 3.9883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033678554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:59 Heat of formation + Delta-G solvation = -62.104134 kcal Electronic energy + Delta-G solvation = -30226.069464 eV Core-core repulsion = 25880.805037 eV Total energy + Delta-G solvation = -4345.264428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.22628 -49.20425 -40.44321 -38.89582 -37.54274 -34.36381 -34.02903 -31.98675 -31.01249 -29.58227 -29.22433 -27.86026 -26.49010 -24.74215 -24.19039 -23.30150 -22.02655 -20.96438 -20.17059 -18.54279 -18.33278 -17.76587 -17.05961 -16.77735 -16.26120 -16.16668 -15.82549 -15.50723 -15.08821 -14.99242 -14.75798 -14.63089 -14.36911 -14.08077 -13.85952 -13.40203 -13.08814 -12.94509 -12.73056 -12.40058 -12.21701 -12.04141 -11.97418 -11.82497 -11.76479 -11.47004 -11.33993 -11.26812 -10.99124 -10.91615 -10.89128 -10.24111 -10.17965 -10.01626 -9.75496 -9.48806 -9.23869 -8.80619 -8.74828 -8.21546 -6.88102 -5.79849 -3.14378 0.70652 0.83558 2.78699 3.07605 3.35616 3.39955 3.41808 3.42875 3.64441 4.16514 4.27648 4.35500 4.42668 4.57861 4.68807 4.84279 4.99799 5.05759 5.18793 5.26143 5.38958 5.44525 5.56395 5.57351 5.59343 5.67367 5.71430 5.72837 5.83778 5.95661 6.08944 6.10557 6.14271 6.24405 6.30285 6.42188 6.45941 6.52420 6.55550 6.78134 6.94886 7.48100 7.52544 7.74886 7.79049 8.15876 8.39938 9.13046 9.72614 10.36690 11.31119 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.002736 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.646467 B =10229.751291 C =10279.069709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.107 0.893 4 C 0.516 3.484 5 O -0.547 6.547 6 N -0.582 5.582 7 C 0.076 3.924 8 C 0.112 3.888 9 H 0.092 0.908 10 C -0.157 4.157 11 C 0.176 3.824 12 N -0.601 5.601 13 C -0.233 4.233 14 H 0.078 0.922 15 C -0.003 4.003 16 N -0.919 5.919 17 Si 0.911 3.089 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.125 3.875 22 C -0.112 4.112 23 C -0.021 4.021 24 C -0.167 4.167 25 C 0.126 3.874 26 F -0.134 7.134 27 C -0.197 4.197 28 C 0.136 3.864 29 F -0.128 7.128 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.253 0.747 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -3.662 19.699 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.426 6.426 6 N -0.313 5.313 7 C -0.066 4.066 8 C 0.007 3.993 9 H 0.110 0.890 10 C -0.197 4.197 11 C 0.051 3.949 12 N -0.328 5.328 13 C -0.361 4.361 14 H 0.096 0.904 15 C -0.200 4.200 16 N -0.565 5.565 17 Si 0.741 3.259 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.002 4.002 22 C -0.114 4.114 23 C -0.039 4.039 24 C -0.186 4.186 25 C 0.107 3.893 26 F -0.113 7.113 27 C -0.217 4.217 28 C 0.116 3.884 29 F -0.107 7.107 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.063 -4.255 19.476 20.169 hybrid contribution 0.776 0.333 -0.719 1.109 sum -2.287 -3.922 18.757 19.299 Atomic orbital electron populations 1.21772 0.91092 1.03307 1.03383 1.20249 0.98462 1.00591 0.90392 0.87489 1.20199 0.78281 0.86946 0.84248 1.90654 1.49745 1.17013 1.85158 1.47699 1.65308 1.09972 1.08274 1.21988 1.00854 0.97891 0.85826 1.22510 0.97218 0.80367 0.99171 0.89028 1.23311 0.96245 1.00773 0.99332 1.21196 0.83681 1.00679 0.89299 1.44534 1.05935 1.82283 1.00062 1.19010 0.90781 1.41627 0.84690 0.90425 1.24782 0.96348 1.01580 0.97301 1.69955 1.13117 1.53405 1.20074 0.86145 0.79789 0.77752 0.82214 1.21527 1.21697 1.20717 1.21875 0.95827 0.96235 0.86298 1.19545 1.00311 0.95408 0.96100 1.20815 0.96254 0.92239 0.94616 1.21215 1.00755 1.01621 0.94970 1.17309 0.97088 0.90314 0.84587 1.91517 1.87562 1.81660 1.50552 1.20914 1.06346 0.94695 0.99718 1.17103 0.97337 0.79155 0.94789 1.91520 1.90817 1.33746 1.94591 0.91649 0.91206 0.90787 0.93053 0.87119 0.92044 0.91745 0.91268 0.93125 0.93920 0.93677 0.94971 0.93627 0.83503 0.84035 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.92 37.16 0.33 -1.01 16 2 C -0.08 -0.91 2.05 -92.92 -0.19 -1.10 16 3 H 0.11 1.23 5.17 -51.93 -0.27 0.96 16 4 C 0.52 8.06 6.79 -10.99 -0.07 7.99 16 5 O -0.55 -9.89 14.03 5.56 0.08 -9.81 16 6 N -0.58 -9.65 2.91 -171.48 -0.50 -10.15 16 7 C 0.08 1.44 8.88 59.85 0.53 1.97 16 8 C 0.11 1.75 3.04 -65.78 -0.20 1.55 16 9 H 0.09 1.16 5.48 -51.93 -0.28 0.88 16 10 C -0.16 -2.58 6.22 -24.90 -0.15 -2.73 16 11 C 0.18 3.87 4.44 -3.06 -0.01 3.86 16 12 N -0.60 -13.85 1.92 -170.07 -0.33 -14.18 16 13 C -0.23 -6.04 9.73 -15.06 -0.15 -6.19 16 14 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 15 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 16 N -0.92 -25.47 10.31 55.49 0.57 -24.90 16 17 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.12 2.33 6.17 -2.53 -0.02 2.32 16 22 C -0.11 -1.33 4.63 -104.54 -0.48 -1.81 16 23 C -0.02 -0.23 7.88 -39.60 -0.31 -0.55 16 24 C -0.17 -1.66 10.03 -39.50 -0.40 -2.06 16 25 C 0.13 1.32 7.30 -39.43 -0.29 1.03 16 26 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 27 C -0.20 -2.04 10.01 -39.45 -0.39 -2.44 16 28 C 0.14 1.56 7.24 -39.43 -0.29 1.28 16 29 F -0.13 -1.53 16.19 2.25 0.04 -1.49 16 30 H 0.06 0.62 7.46 -51.93 -0.39 0.24 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.73 7.19 -51.93 -0.37 0.35 16 33 H 0.05 0.99 7.47 -51.93 -0.39 0.61 16 34 H 0.11 2.39 5.14 -51.92 -0.27 2.12 16 35 H 0.06 1.15 7.22 -51.93 -0.38 0.77 16 36 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.24 6.30 -51.93 -0.33 0.92 16 39 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.15 1.60 6.97 -52.49 -0.37 1.24 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -29.10 361.02 -7.79 -36.89 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.92 Total: 1.37 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.19 Total: 1.93 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.25 Total: -49.23 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.10 -7.79 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds