Wall clock time and date at job start Tue Mar 31 2020 21:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47114 * 2 1 4 4 C 1.50701 * 109.47052 * 239.99504 * 2 1 3 5 5 O 1.21283 * 119.99947 * 261.95668 * 4 2 1 6 6 N 1.34771 * 119.99818 * 81.96550 * 4 2 1 7 7 C 1.46500 * 119.99906 * 183.80417 * 6 4 2 8 8 C 1.46501 * 120.00133 * 3.79363 * 6 4 2 9 9 H 1.09001 * 110.88695 * 9.02890 * 8 6 4 10 10 C 1.55155 * 111.00850 * 245.14245 * 8 6 4 11 11 C 1.54321 * 102.94204 * 277.43015 * 10 8 6 12 12 N 1.47024 * 107.27177 * 337.80231 * 11 10 8 13 13 C 1.36940 * 125.64783 * 178.89056 * 12 11 10 14 14 H 1.08001 * 119.99774 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99940 * 0.03635 * 13 12 11 16 16 N 1.31622 * 120.00188 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47124 * 89.99685 * 17 15 13 19 19 H 1.48492 * 109.47377 * 209.99702 * 17 15 13 20 20 H 1.48505 * 109.46953 * 329.99800 * 17 15 13 21 21 C 1.47427 * 108.70442 * 358.94717 * 12 11 10 22 22 C 1.50702 * 109.47088 * 119.99996 * 2 1 3 23 23 C 1.38230 * 119.98968 * 60.26984 * 22 2 1 24 24 C 1.38190 * 120.04938 * 180.27557 * 23 22 2 25 25 C 1.38494 * 120.02781 * 359.70959 * 24 23 22 26 26 F 1.35092 * 120.01664 * 179.97438 * 25 24 23 27 27 C 1.38403 * 119.97001 * 0.02562 * 25 24 23 28 28 C 1.38437 * 119.95435 * 359.97438 * 27 25 24 29 29 F 1.35095 * 120.01568 * 179.97438 * 28 27 25 30 30 H 1.09005 * 109.47142 * 178.40823 * 1 2 3 31 31 H 1.09003 * 109.47166 * 298.40880 * 1 2 3 32 32 H 1.08998 * 109.47059 * 58.40948 * 1 2 3 33 33 H 1.09000 * 109.47315 * 95.29410 * 7 6 4 34 34 H 1.09008 * 109.47252 * 215.29162 * 7 6 4 35 35 H 1.08994 * 109.47211 * 335.29097 * 7 6 4 36 36 H 1.08998 * 110.71802 * 35.79632 * 10 8 6 37 37 H 1.09002 * 110.71630 * 159.06770 * 10 8 6 38 38 H 1.09000 * 109.88477 * 97.22675 * 11 10 8 39 39 H 1.09002 * 109.88207 * 218.23675 * 11 10 8 40 40 H 0.96995 * 119.99948 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.36147 * 265.28590 * 21 12 11 42 42 H 1.08995 * 110.36823 * 142.96390 * 21 12 11 43 43 H 1.07998 * 119.97613 * 359.97438 * 23 22 2 44 44 H 1.07997 * 119.98512 * 179.72528 * 24 23 22 45 45 H 1.08007 * 120.02076 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.3730 -1.8726 -1.1630 6 7 2.1031 -0.0546 -2.4056 7 6 2.5118 -0.7670 -3.6187 8 6 1.7711 1.3709 -2.4700 9 1 1.6430 1.7857 -1.4702 10 6 0.5066 1.6088 -3.3370 11 6 1.0691 1.6156 -4.7741 12 7 2.5005 1.9382 -4.6810 13 6 3.3700 2.0215 -5.7357 14 1 4.4076 2.2657 -5.5620 15 6 2.9177 1.7924 -7.0279 16 7 1.6532 1.4946 -7.2394 17 14 4.1036 1.9068 -8.4666 18 1 4.7155 0.5760 -8.7107 19 1 3.3684 2.3437 -9.6806 20 1 5.1696 2.8917 -8.1522 21 6 2.8450 2.1557 -3.2642 22 6 2.0323 -0.7104 1.2305 23 6 1.7028 -2.0354 1.4462 24 6 2.1581 -2.6864 2.5769 25 6 2.9500 -2.0136 3.4925 26 9 3.3945 -2.6501 4.5980 27 6 3.2851 -0.6885 3.2747 28 6 2.8285 -0.0373 2.1416 29 9 3.1543 1.2563 1.9281 30 1 -0.3634 -1.0273 -0.0285 31 1 -0.3634 0.4889 0.9039 32 1 -0.3633 0.5383 -0.8754 33 1 1.6264 -1.0999 -4.1603 34 1 3.0960 -0.0998 -4.2525 35 1 3.1172 -1.6314 -3.3458 36 1 -0.2088 0.7968 -3.2067 37 1 0.0497 2.5690 -3.0972 38 1 0.9391 0.6331 -5.2277 39 1 0.5548 2.3697 -5.3699 40 1 1.3372 1.3341 -8.1424 41 1 2.7966 3.2171 -3.0207 42 1 3.8384 1.7615 -3.0505 43 1 1.0852 -2.5609 0.7329 44 1 1.8964 -3.7204 2.7467 45 1 3.9023 -0.1629 3.9883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033678554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:58 Heat of formation + Delta-G solvation = -76.218498 kcal Electronic energy + Delta-G solvation = -30226.681509 eV Core-core repulsion = 25880.805037 eV Total energy + Delta-G solvation = -4345.876472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.07120 -50.02170 -41.63400 -39.94985 -38.92160 -35.82811 -35.11070 -33.76851 -31.81428 -31.12217 -30.26908 -29.37108 -27.88834 -26.36415 -25.32220 -24.13916 -23.08395 -22.23633 -21.92638 -19.65762 -19.28174 -18.90338 -18.75152 -17.82029 -17.38952 -17.01028 -16.73106 -16.65335 -16.41864 -16.31365 -16.09003 -15.67590 -15.60266 -15.47682 -14.98072 -14.60379 -14.45719 -13.92510 -13.82246 -13.71005 -13.53875 -13.36772 -13.15284 -13.08357 -12.91292 -12.79426 -12.76474 -12.69225 -12.37441 -12.25732 -12.18213 -12.01335 -11.87847 -11.70169 -11.47742 -10.73574 -10.69234 -10.04745 -9.69551 -9.64968 -8.76210 -7.82068 -5.15886 -0.12599 0.03158 1.47442 1.48205 1.55977 1.57076 1.97388 2.39487 2.50840 2.82678 3.29168 3.37172 3.41211 3.47164 3.61118 3.67968 3.83566 3.92496 3.97465 4.03191 4.17324 4.25021 4.35130 4.56190 4.67985 4.69311 4.73875 4.74969 4.80306 4.86251 4.90314 4.91930 4.95786 5.03123 5.06602 5.09210 5.19874 5.25172 5.31911 5.50244 5.51723 5.73300 5.74369 5.85022 6.23216 6.49899 7.12927 7.14591 7.81141 8.43553 9.27190 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.002736 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.646467 B =10229.751291 C =10279.069709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.117 0.883 4 C 0.516 3.484 5 O -0.573 6.573 6 N -0.587 5.587 7 C 0.092 3.908 8 C 0.126 3.874 9 H 0.136 0.864 10 C -0.141 4.141 11 C 0.184 3.816 12 N -0.617 5.617 13 C -0.235 4.235 14 H 0.078 0.922 15 C -0.058 4.058 16 N -0.945 5.945 17 Si 0.968 3.032 18 H -0.290 1.290 19 H -0.297 1.297 20 H -0.272 1.272 21 C 0.119 3.881 22 C -0.123 4.123 23 C -0.029 4.029 24 C -0.162 4.162 25 C 0.121 3.879 26 F -0.135 7.135 27 C -0.194 4.194 28 C 0.126 3.874 29 F -0.131 7.131 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.015 0.985 39 H 0.005 0.995 40 H 0.245 0.755 41 H 0.050 0.950 42 H 0.039 0.961 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 -3.136 22.322 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 H 0.135 0.865 4 C 0.305 3.695 5 O -0.453 6.453 6 N -0.317 5.317 7 C -0.051 4.051 8 C 0.022 3.978 9 H 0.153 0.847 10 C -0.180 4.180 11 C 0.059 3.941 12 N -0.344 5.344 13 C -0.364 4.364 14 H 0.096 0.904 15 C -0.251 4.251 16 N -0.594 5.594 17 Si 0.797 3.203 18 H -0.217 1.217 19 H -0.224 1.224 20 H -0.197 1.197 21 C -0.007 4.007 22 C -0.124 4.124 23 C -0.047 4.047 24 C -0.180 4.180 25 C 0.102 3.898 26 F -0.114 7.114 27 C -0.214 4.214 28 C 0.107 3.893 29 F -0.110 7.110 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.033 0.967 39 H 0.023 0.977 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.164 0.836 44 H 0.179 0.821 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.238 -3.712 22.147 22.688 hybrid contribution 0.893 0.118 -1.456 1.712 sum -2.345 -3.594 20.691 21.131 Atomic orbital electron populations 1.21818 0.89061 1.03761 1.04691 1.20254 0.99979 1.00320 0.88253 0.86477 1.20876 0.77200 0.86735 0.84669 1.90642 1.50666 1.18437 1.85592 1.47755 1.65685 1.10395 1.07902 1.21588 0.99730 0.97215 0.86551 1.22550 0.95153 0.79446 1.00653 0.84689 1.23184 0.96668 1.02897 0.95242 1.20932 0.83345 0.97351 0.92437 1.44720 1.06139 1.82050 1.01444 1.19303 0.91341 1.39979 0.85745 0.90392 1.25463 0.97671 1.02468 0.99538 1.70158 1.14511 1.55021 1.19678 0.85239 0.78183 0.77563 0.79308 1.21708 1.22398 1.19689 1.22083 0.96636 0.97619 0.84348 1.19606 1.00839 0.95803 0.96173 1.20868 0.96605 0.92188 0.95029 1.21424 0.99874 1.02493 0.94257 1.17402 0.97274 0.90482 0.84677 1.91518 1.87594 1.81681 1.50605 1.21096 1.05953 0.94716 0.99619 1.17164 0.97728 0.79179 0.95265 1.91510 1.90909 1.33914 1.94659 0.91698 0.88905 0.90476 0.94332 0.89999 0.92414 0.90346 0.88514 0.96701 0.97676 0.94591 0.93220 0.94260 0.83604 0.82104 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.92 71.98 0.64 -1.51 16 2 C -0.07 -1.41 2.05 -12.29 -0.03 -1.43 16 3 H 0.12 2.22 5.17 -2.39 -0.01 2.20 16 4 C 0.52 15.17 6.79 87.66 0.59 15.77 16 5 O -0.57 -20.16 14.03 -3.04 -0.04 -20.20 16 6 N -0.59 -18.69 2.91 -814.82 -2.37 -21.06 16 7 C 0.09 3.55 8.88 127.77 1.13 4.69 16 8 C 0.13 3.60 3.04 46.38 0.14 3.74 16 9 H 0.14 2.79 5.48 -2.39 -0.01 2.78 16 10 C -0.14 -4.32 6.22 31.78 0.20 -4.12 16 11 C 0.18 8.25 4.44 86.73 0.39 8.63 16 12 N -0.62 -28.68 1.92 -691.97 -1.33 -30.01 16 13 C -0.23 -12.37 9.73 84.03 0.82 -11.55 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 16 N -0.94 -54.45 10.31 21.65 0.22 -54.23 16 17 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 C 0.12 4.28 6.17 86.86 0.54 4.81 16 22 C -0.12 -2.60 4.63 -19.81 -0.09 -2.70 16 23 C -0.03 -0.58 7.88 22.26 0.18 -0.40 16 24 C -0.16 -2.86 10.03 22.32 0.22 -2.64 16 25 C 0.12 2.25 7.30 22.37 0.16 2.42 16 26 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 27 C -0.19 -3.56 10.01 22.36 0.22 -3.33 16 28 C 0.13 2.59 7.24 22.37 0.16 2.75 16 29 F -0.13 -2.77 16.19 44.97 0.73 -2.04 16 30 H 0.06 1.05 7.46 -2.38 -0.02 1.03 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.19 7.19 -2.39 -0.02 1.18 16 33 H 0.04 1.55 7.47 -2.39 -0.02 1.53 16 34 H 0.08 3.65 5.14 -2.38 -0.01 3.64 16 35 H 0.06 2.21 7.22 -2.39 -0.02 2.20 16 36 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.01 0.76 6.30 -2.39 -0.02 0.75 16 39 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 40 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.15 2.94 6.97 -2.91 -0.02 2.92 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.22 361.02 6.78 -58.44 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.02 Total: 11.65 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.75 Total: 12.43 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.47 Total: -105.29 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.04 Total: -20.20 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.50 Total: -3.84 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.22 6.78 -58.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds