Wall clock time and date at job start Tue Mar 31 2020 21:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46780 * 2 1 4 4 C 1.50700 * 109.46762 * 119.99378 * 2 1 3 5 5 O 1.21280 * 120.00116 * 95.77011 * 4 2 1 6 6 N 1.34776 * 120.00276 * 275.76624 * 4 2 1 7 7 C 1.46497 * 120.00014 * 186.07364 * 6 4 2 8 8 C 1.46500 * 120.00016 * 6.06899 * 6 4 2 9 9 H 1.09002 * 110.88227 * 9.14006 * 8 6 4 10 10 C 1.55160 * 111.00531 * 133.05463 * 8 6 4 11 11 C 1.54318 * 102.94169 * 153.57672 * 10 8 6 12 12 N 1.47287 * 107.30707 * 337.82241 * 11 10 8 13 13 C 1.36948 * 125.79402 * 178.92304 * 12 11 10 14 14 H 1.07999 * 119.99856 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99487 * 359.97438 * 13 12 11 16 16 N 1.31619 * 120.00653 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99506 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47120 * 90.00380 * 17 15 13 19 19 H 1.48500 * 109.46711 * 210.00074 * 17 15 13 20 20 H 1.48499 * 109.47163 * 329.99871 * 17 15 13 21 21 C 1.47427 * 108.56158 * 358.92337 * 12 11 10 22 22 C 1.50698 * 109.47184 * 239.99589 * 2 1 3 23 23 C 1.38230 * 119.98721 * 300.00045 * 22 2 1 24 24 C 1.38186 * 120.05181 * 180.02562 * 23 22 2 25 25 C 1.38495 * 120.02210 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.00944 * 179.97438 * 25 24 23 27 27 C 1.38392 * 119.97723 * 0.02562 * 25 24 23 28 28 C 1.38441 * 119.95029 * 359.76554 * 27 25 24 29 29 F 1.35100 * 120.01922 * 180.22970 * 28 27 25 30 30 H 1.09001 * 109.47196 * 306.26561 * 1 2 3 31 31 H 1.09005 * 109.46811 * 66.26520 * 1 2 3 32 32 H 1.09001 * 109.47225 * 186.26736 * 1 2 3 33 33 H 1.09006 * 109.47088 * 265.00331 * 7 6 4 34 34 H 1.08993 * 109.47419 * 25.00362 * 7 6 4 35 35 H 1.09000 * 109.47394 * 145.00715 * 7 6 4 36 36 H 1.08989 * 110.72382 * 271.94373 * 10 8 6 37 37 H 1.09000 * 110.71696 * 35.21835 * 10 8 6 38 38 H 1.09007 * 109.88416 * 97.22686 * 11 10 8 39 39 H 1.09004 * 109.88656 * 218.39430 * 11 10 8 40 40 H 0.96996 * 120.00514 * 179.97438 * 16 15 13 41 41 H 1.08993 * 110.36294 * 265.26542 * 21 12 11 42 42 H 1.08996 * 110.36917 * 143.04872 * 21 12 11 43 43 H 1.08003 * 119.97244 * 359.97438 * 23 22 2 44 44 H 1.07999 * 119.98624 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.02892 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.3339 -1.8836 1.1729 6 7 2.1463 -0.0417 2.3952 7 6 2.7581 -0.6924 3.5565 8 6 1.6586 1.3357 2.5000 9 1 1.0926 1.6161 1.6116 10 6 0.8104 1.5293 3.7847 11 6 0.9756 3.0340 4.0845 12 7 2.2115 3.4803 3.4190 13 6 2.7068 4.7570 3.4222 14 1 3.6255 4.9811 2.9006 15 6 2.0274 5.7632 4.0952 16 7 0.9076 5.4902 4.7305 17 14 2.7027 7.5050 4.0990 18 1 2.1533 8.2514 2.9388 19 1 2.3075 8.1862 5.3580 20 1 4.1840 7.4618 4.0034 21 6 2.8277 2.3214 2.7475 22 6 2.0324 -0.7105 -1.2304 23 6 1.6983 -2.0339 -1.4488 24 6 2.1586 -2.6868 -2.5763 25 6 2.9550 -2.0156 -3.4892 26 9 3.4053 -2.6543 -4.5911 27 6 3.2901 -0.6906 -3.2716 28 6 2.8248 -0.0362 -2.1438 29 9 3.1473 1.2586 -1.9324 30 1 -0.3634 0.6079 0.8286 31 1 -0.3633 0.4137 -0.9408 32 1 -0.3634 -1.0215 0.1122 33 1 1.9784 -1.1269 4.1822 34 1 3.4331 -1.4787 3.2187 35 1 3.3179 0.0442 4.1328 36 1 -0.2352 1.2860 3.5968 37 1 1.2066 0.9274 4.6026 38 1 0.1226 3.5865 3.6902 39 1 1.0566 3.1911 5.1601 40 1 0.4330 6.1932 5.2011 41 1 3.5787 1.8648 3.3920 42 1 3.2748 2.6250 1.8010 43 1 1.0776 -2.5582 -0.7372 44 1 1.8973 -3.7210 -2.7457 45 1 3.9114 -0.1664 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033678555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:03 Heat of formation + Delta-G solvation = -67.302357 kcal Electronic energy + Delta-G solvation = -29972.232141 eV Core-core repulsion = 25626.742301 eV Total energy + Delta-G solvation = -4345.489839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.22355 -49.15438 -40.52675 -38.87256 -37.51727 -34.68192 -34.28610 -32.02510 -31.01762 -29.52461 -29.25847 -27.74720 -26.83176 -24.81121 -24.32214 -23.32159 -22.09733 -20.73244 -20.21957 -18.80272 -18.40127 -17.79915 -17.08920 -16.80988 -16.28683 -16.15824 -15.81819 -15.48405 -15.20148 -15.11984 -14.72479 -14.63276 -14.40788 -14.22706 -13.92694 -13.38755 -13.11788 -12.92960 -12.82466 -12.54364 -12.38958 -12.25698 -12.10647 -11.96787 -11.90185 -11.70468 -11.43182 -11.30774 -11.00646 -10.96762 -10.83756 -10.38686 -10.14685 -10.02790 -9.78899 -9.62267 -9.24601 -8.82470 -8.70053 -8.44504 -6.92405 -5.78608 -3.12981 0.69872 0.83253 2.61228 2.97549 3.25722 3.36770 3.42443 3.43842 3.65231 4.16159 4.25902 4.32168 4.43930 4.54212 4.65325 4.89443 4.99069 5.08280 5.13640 5.22582 5.40025 5.47080 5.51461 5.55447 5.56684 5.61356 5.62474 5.69973 5.72047 5.72580 5.84204 5.92488 5.96685 6.09120 6.11591 6.16636 6.35086 6.45711 6.53589 6.61230 6.71020 7.46354 7.49024 7.50910 7.73984 8.15420 8.19803 9.13565 9.73534 10.37708 11.33132 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002989 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.298214 B = 9366.793265 C =10421.531980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.111 0.889 4 C 0.524 3.476 5 O -0.545 6.545 6 N -0.596 5.596 7 C 0.085 3.915 8 C 0.111 3.889 9 H 0.102 0.898 10 C -0.151 4.151 11 C 0.178 3.822 12 N -0.602 5.602 13 C -0.230 4.230 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.127 3.873 22 C -0.114 4.114 23 C -0.022 4.022 24 C -0.168 4.168 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.197 4.197 28 C 0.138 3.862 29 F -0.125 7.125 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.042 0.958 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -15.412 -11.889 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.129 0.871 4 C 0.312 3.688 5 O -0.423 6.423 6 N -0.327 5.327 7 C -0.058 4.058 8 C 0.007 3.993 9 H 0.119 0.881 10 C -0.190 4.190 11 C 0.053 3.947 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.569 5.569 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.000 4.000 22 C -0.116 4.116 23 C -0.041 4.041 24 C -0.187 4.187 25 C 0.108 3.892 26 F -0.113 7.113 27 C -0.217 4.217 28 C 0.119 3.881 29 F -0.103 7.103 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.646 -15.781 -11.823 19.729 hybrid contribution 0.573 1.234 -0.043 1.362 sum -0.073 -14.547 -11.866 18.773 Atomic orbital electron populations 1.21815 0.91002 1.03216 1.03692 1.20228 0.98551 1.00897 0.90087 0.87134 1.20240 0.77678 0.86803 0.84103 1.90651 1.50752 1.15773 1.85095 1.47801 1.59440 1.14498 1.10969 1.21618 0.98048 0.98199 0.87913 1.22698 0.96976 0.79558 1.00077 0.88055 1.23232 0.98760 1.00944 0.96092 1.21212 0.89632 0.86328 0.97521 1.44442 1.24717 1.04016 1.59781 1.19049 1.05577 0.82990 1.28172 0.90332 1.24797 0.97304 0.98215 0.99904 1.69936 1.17154 1.31768 1.38043 0.86112 0.78216 0.84296 0.77098 1.21508 1.21646 1.20655 1.21802 0.93447 0.88494 0.96273 1.19518 1.00551 0.95379 0.96109 1.20805 0.96296 0.92238 0.94715 1.21199 1.00811 1.01594 0.95084 1.17312 0.96960 0.90283 0.84657 1.91520 1.87378 1.81541 1.50840 1.20938 1.06224 0.94647 0.99855 1.17138 0.97078 0.79205 0.94695 1.91558 1.90790 1.33431 1.94550 0.90751 0.90921 0.91615 0.92748 0.90756 0.90703 0.91708 0.91650 0.93167 0.93553 0.93656 0.95861 0.93976 0.83519 0.84050 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.67 37.16 0.32 -1.10 16 2 C -0.08 -0.94 2.01 -92.92 -0.19 -1.13 16 3 H 0.11 1.45 5.86 -51.93 -0.30 1.15 16 4 C 0.52 7.52 6.76 -10.99 -0.07 7.45 16 5 O -0.54 -8.75 14.12 5.56 0.08 -8.68 16 6 N -0.60 -8.62 2.91 -171.48 -0.50 -9.12 16 7 C 0.08 1.12 8.97 59.85 0.54 1.66 16 8 C 0.11 1.77 2.93 -65.78 -0.19 1.57 16 9 H 0.10 1.54 4.65 -51.93 -0.24 1.30 16 10 C -0.15 -2.54 6.46 -24.90 -0.16 -2.70 16 11 C 0.18 4.01 5.38 -2.92 -0.02 3.99 16 12 N -0.60 -14.53 3.40 -169.86 -0.58 -15.11 16 13 C -0.23 -6.17 10.28 -15.06 -0.15 -6.32 16 14 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 15 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 16 N -0.92 -26.05 10.34 55.49 0.57 -25.47 16 17 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.13 2.48 6.83 -2.53 -0.02 2.46 16 22 C -0.11 -1.36 4.64 -104.55 -0.49 -1.85 16 23 C -0.02 -0.24 7.94 -39.60 -0.31 -0.56 16 24 C -0.17 -1.63 10.03 -39.51 -0.40 -2.02 16 25 C 0.13 1.33 7.30 -39.43 -0.29 1.04 16 26 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 27 C -0.20 -2.10 10.01 -39.45 -0.39 -2.50 16 28 C 0.14 1.67 7.24 -39.43 -0.29 1.39 16 29 F -0.12 -1.66 16.19 2.25 0.04 -1.62 16 30 H 0.07 0.78 6.76 -51.93 -0.35 0.42 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.61 7.61 -51.93 -0.40 0.22 16 33 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 34 H 0.07 0.98 7.36 -51.93 -0.38 0.60 16 35 H 0.07 1.00 6.71 -51.93 -0.35 0.65 16 36 H 0.06 0.97 8.14 -51.94 -0.42 0.55 16 37 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 38 H 0.05 1.25 7.39 -51.92 -0.38 0.86 16 39 H 0.05 1.17 7.52 -51.93 -0.39 0.78 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.46 6.66 -51.93 -0.35 0.12 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.15 1.50 6.98 -52.48 -0.37 1.13 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -30.08 364.94 -8.01 -38.09 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.93 Total: 0.16 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.20 Total: 1.12 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.50 Total: -49.70 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.08 -8.01 -38.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.214 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds