Wall clock time and date at job start Tue Mar 31 2020 21:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46780 * 2 1 4 4 C 1.50700 * 109.46762 * 119.99378 * 2 1 3 5 5 O 1.21280 * 120.00116 * 95.77011 * 4 2 1 6 6 N 1.34776 * 120.00276 * 275.76624 * 4 2 1 7 7 C 1.46497 * 120.00014 * 186.07364 * 6 4 2 8 8 C 1.46500 * 120.00016 * 6.06899 * 6 4 2 9 9 H 1.09002 * 110.88227 * 9.14006 * 8 6 4 10 10 C 1.55160 * 111.00531 * 133.05463 * 8 6 4 11 11 C 1.54318 * 102.94169 * 153.57672 * 10 8 6 12 12 N 1.47287 * 107.30707 * 337.82241 * 11 10 8 13 13 C 1.36948 * 125.79402 * 178.92304 * 12 11 10 14 14 H 1.07999 * 119.99856 * 180.02562 * 13 12 11 15 15 C 1.38809 * 119.99487 * 359.97438 * 13 12 11 16 16 N 1.31619 * 120.00653 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99506 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47120 * 90.00380 * 17 15 13 19 19 H 1.48500 * 109.46711 * 210.00074 * 17 15 13 20 20 H 1.48499 * 109.47163 * 329.99871 * 17 15 13 21 21 C 1.47427 * 108.56158 * 358.92337 * 12 11 10 22 22 C 1.50698 * 109.47184 * 239.99589 * 2 1 3 23 23 C 1.38230 * 119.98721 * 300.00045 * 22 2 1 24 24 C 1.38186 * 120.05181 * 180.02562 * 23 22 2 25 25 C 1.38495 * 120.02210 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.00944 * 179.97438 * 25 24 23 27 27 C 1.38392 * 119.97723 * 0.02562 * 25 24 23 28 28 C 1.38441 * 119.95029 * 359.76554 * 27 25 24 29 29 F 1.35100 * 120.01922 * 180.22970 * 28 27 25 30 30 H 1.09001 * 109.47196 * 306.26561 * 1 2 3 31 31 H 1.09005 * 109.46811 * 66.26520 * 1 2 3 32 32 H 1.09001 * 109.47225 * 186.26736 * 1 2 3 33 33 H 1.09006 * 109.47088 * 265.00331 * 7 6 4 34 34 H 1.08993 * 109.47419 * 25.00362 * 7 6 4 35 35 H 1.09000 * 109.47394 * 145.00715 * 7 6 4 36 36 H 1.08989 * 110.72382 * 271.94373 * 10 8 6 37 37 H 1.09000 * 110.71696 * 35.21835 * 10 8 6 38 38 H 1.09007 * 109.88416 * 97.22686 * 11 10 8 39 39 H 1.09004 * 109.88656 * 218.39430 * 11 10 8 40 40 H 0.96996 * 120.00514 * 179.97438 * 16 15 13 41 41 H 1.08993 * 110.36294 * 265.26542 * 21 12 11 42 42 H 1.08996 * 110.36917 * 143.04872 * 21 12 11 43 43 H 1.08003 * 119.97244 * 359.97438 * 23 22 2 44 44 H 1.07999 * 119.98624 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.02892 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.3339 -1.8836 1.1729 6 7 2.1463 -0.0417 2.3952 7 6 2.7581 -0.6924 3.5565 8 6 1.6586 1.3357 2.5000 9 1 1.0926 1.6161 1.6116 10 6 0.8104 1.5293 3.7847 11 6 0.9756 3.0340 4.0845 12 7 2.2115 3.4803 3.4190 13 6 2.7068 4.7570 3.4222 14 1 3.6255 4.9811 2.9006 15 6 2.0274 5.7632 4.0952 16 7 0.9076 5.4902 4.7305 17 14 2.7027 7.5050 4.0990 18 1 2.1533 8.2514 2.9388 19 1 2.3075 8.1862 5.3580 20 1 4.1840 7.4618 4.0034 21 6 2.8277 2.3214 2.7475 22 6 2.0324 -0.7105 -1.2304 23 6 1.6983 -2.0339 -1.4488 24 6 2.1586 -2.6868 -2.5763 25 6 2.9550 -2.0156 -3.4892 26 9 3.4053 -2.6543 -4.5911 27 6 3.2901 -0.6906 -3.2716 28 6 2.8248 -0.0362 -2.1438 29 9 3.1473 1.2586 -1.9324 30 1 -0.3634 0.6079 0.8286 31 1 -0.3633 0.4137 -0.9408 32 1 -0.3634 -1.0215 0.1122 33 1 1.9784 -1.1269 4.1822 34 1 3.4331 -1.4787 3.2187 35 1 3.3179 0.0442 4.1328 36 1 -0.2352 1.2860 3.5968 37 1 1.2066 0.9274 4.6026 38 1 0.1226 3.5865 3.6902 39 1 1.0566 3.1911 5.1601 40 1 0.4330 6.1932 5.2011 41 1 3.5787 1.8648 3.3920 42 1 3.2748 2.6250 1.8010 43 1 1.0776 -2.5582 -0.7372 44 1 1.8973 -3.7210 -2.7457 45 1 3.9114 -0.1664 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033678555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:02 Heat of formation + Delta-G solvation = -82.587338 kcal Electronic energy + Delta-G solvation = -29972.894947 eV Core-core repulsion = 25626.742301 eV Total energy + Delta-G solvation = -4346.152646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.10676 -50.03309 -41.63190 -39.88227 -38.93257 -36.17265 -35.20619 -33.86281 -31.83546 -31.01445 -30.38513 -29.16057 -28.06431 -26.48339 -25.42328 -24.17158 -23.09356 -22.12327 -21.93126 -19.95182 -19.29894 -18.89955 -18.78785 -17.82725 -17.42097 -17.03997 -16.79043 -16.63647 -16.39306 -16.30325 -16.11156 -15.90795 -15.52968 -15.47192 -14.99868 -14.57705 -14.32518 -14.16980 -14.09364 -13.86999 -13.66719 -13.52575 -13.21526 -12.99679 -12.97351 -12.88671 -12.77528 -12.70225 -12.35005 -12.27661 -12.18291 -12.02525 -12.02202 -11.76710 -11.52461 -10.80067 -10.70428 -10.07245 -9.74460 -9.64649 -8.88724 -7.84751 -5.20367 -0.14805 0.00968 1.47786 1.48923 1.49606 1.57552 1.87905 2.35530 2.51249 2.81033 3.24537 3.32908 3.35022 3.43487 3.61911 3.68314 3.83549 3.90391 3.93327 4.02946 4.11425 4.15617 4.26369 4.41187 4.60531 4.62914 4.65274 4.67932 4.76625 4.81485 4.84675 4.87794 4.90447 4.91469 4.99920 5.04735 5.10755 5.22896 5.26716 5.43545 5.48202 5.65288 5.72460 5.77224 6.18790 6.32878 7.04529 7.10768 7.76175 8.39333 9.25217 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002989 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.298214 B = 9366.793265 C =10421.531980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 H 0.100 0.900 4 C 0.526 3.474 5 O -0.559 6.559 6 N -0.596 5.596 7 C 0.082 3.918 8 C 0.133 3.867 9 H 0.112 0.888 10 C -0.134 4.134 11 C 0.186 3.814 12 N -0.623 5.623 13 C -0.242 4.242 14 H 0.080 0.920 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.974 3.026 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.272 1.272 21 C 0.124 3.876 22 C -0.123 4.123 23 C -0.026 4.026 24 C -0.158 4.158 25 C 0.122 3.878 26 F -0.135 7.135 27 C -0.196 4.196 28 C 0.119 3.881 29 F -0.137 7.137 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.020 0.980 39 H 0.010 0.990 40 H 0.248 0.752 41 H 0.026 0.974 42 H 0.040 0.960 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -16.955 -12.969 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 H 0.118 0.882 4 C 0.314 3.686 5 O -0.438 6.438 6 N -0.327 5.327 7 C -0.059 4.059 8 C 0.028 3.972 9 H 0.130 0.870 10 C -0.173 4.173 11 C 0.061 3.939 12 N -0.350 5.350 13 C -0.371 4.371 14 H 0.098 0.902 15 C -0.253 4.253 16 N -0.596 5.596 17 Si 0.803 3.197 18 H -0.212 1.212 19 H -0.221 1.221 20 H -0.197 1.197 21 C -0.003 4.003 22 C -0.124 4.124 23 C -0.044 4.044 24 C -0.176 4.176 25 C 0.103 3.897 26 F -0.113 7.113 27 C -0.215 4.215 28 C 0.100 3.900 29 F -0.116 7.116 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.724 -17.358 -12.922 21.652 hybrid contribution 0.671 1.640 0.256 1.790 sum -0.053 -15.718 -12.666 20.187 Atomic orbital electron populations 1.21834 0.89254 1.04009 1.04322 1.20224 0.99971 0.99975 0.89400 0.88218 1.20544 0.77067 0.86630 0.84333 1.90643 1.51384 1.16482 1.85306 1.47775 1.59588 1.13685 1.11660 1.21699 0.98523 0.98059 0.87660 1.22357 0.95082 0.79662 1.00074 0.86978 1.23059 1.00650 0.96684 0.96902 1.20967 0.88117 0.89815 0.95030 1.44691 1.25452 1.04446 1.60393 1.19390 1.05612 0.84513 1.27594 0.90229 1.25566 0.97853 1.01763 1.00151 1.70138 1.18225 1.32352 1.38895 0.85143 0.77987 0.79938 0.76644 1.21206 1.22103 1.19678 1.21930 0.94692 0.87994 0.95634 1.19588 1.00893 0.95989 0.95954 1.20906 0.96482 0.91759 0.95221 1.21458 0.99487 1.02597 0.94092 1.17398 0.97205 0.90247 0.84854 1.91523 1.87420 1.81483 1.50884 1.21084 1.05927 0.94915 0.99590 1.17302 0.98110 0.78978 0.95607 1.91523 1.91055 1.34293 1.94720 0.90918 0.89713 0.90531 0.91268 0.90676 0.91029 0.89155 0.90373 0.96164 0.97123 0.94297 0.95622 0.94166 0.82826 0.81568 0.82188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.67 71.98 0.62 -1.86 16 2 C -0.07 -1.72 2.01 -12.29 -0.02 -1.75 16 3 H 0.10 2.53 5.86 -2.39 -0.01 2.51 16 4 C 0.53 14.09 6.76 87.66 0.59 14.69 16 5 O -0.56 -16.81 14.12 -3.03 -0.04 -16.86 16 6 N -0.60 -16.11 2.91 -814.84 -2.37 -18.48 16 7 C 0.08 2.02 8.97 127.77 1.15 3.17 16 8 C 0.13 4.04 2.93 46.38 0.14 4.18 16 9 H 0.11 3.23 4.65 -2.39 -0.01 3.21 16 10 C -0.13 -4.32 6.46 31.78 0.21 -4.11 16 11 C 0.19 8.51 5.38 86.68 0.47 8.97 16 12 N -0.62 -30.41 3.40 -691.32 -2.35 -32.76 16 13 C -0.24 -13.18 10.28 84.03 0.86 -12.31 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 16 N -0.95 -54.99 10.34 21.65 0.22 -54.76 16 17 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C 0.12 4.77 6.83 86.85 0.59 5.37 16 22 C -0.12 -2.75 4.64 -19.82 -0.09 -2.84 16 23 C -0.03 -0.49 7.94 22.26 0.18 -0.32 16 24 C -0.16 -2.65 10.03 22.32 0.22 -2.43 16 25 C 0.12 2.31 7.30 22.37 0.16 2.47 16 26 F -0.13 -2.57 17.27 44.97 0.78 -1.80 16 27 C -0.20 -3.91 10.01 22.35 0.22 -3.69 16 28 C 0.12 2.77 7.24 22.37 0.16 2.93 16 29 F -0.14 -3.61 16.19 44.97 0.73 -2.89 16 30 H 0.07 1.35 6.76 -2.39 -0.02 1.33 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.08 1.23 7.61 -2.39 -0.02 1.21 16 33 H 0.07 1.50 7.95 -2.38 -0.02 1.49 16 34 H 0.07 1.85 7.36 -2.39 -0.02 1.83 16 35 H 0.07 1.80 6.71 -2.39 -0.02 1.78 16 36 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.08 2.34 6.75 -2.39 -0.02 2.32 16 38 H 0.02 1.03 7.39 -2.38 -0.02 1.01 16 39 H 0.01 0.55 7.52 -2.38 -0.02 0.53 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.03 1.00 6.66 -2.39 -0.02 0.98 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.15 2.73 6.98 -2.91 -0.02 2.71 16 44 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.17 364.94 5.94 -59.23 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.02 Total: 11.88 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.93 Total: 9.63 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.50 Total: -106.01 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.04 Total: -16.86 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.50 Total: -4.68 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.17 5.94 -59.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033678555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.353 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds