Wall clock time and date at job start Tue Mar 31 2020 20:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49517 * 2 1 4 4 C 1.52760 * 109.58941 * 240.05170 * 2 1 3 5 5 N 1.46920 * 109.01007 * 185.53391 * 4 2 1 6 6 C 1.34776 * 120.63270 * 233.58170 * 5 4 2 7 7 O 1.21278 * 119.99963 * 359.72254 * 6 5 4 8 8 C 1.50699 * 119.99966 * 179.71676 * 6 5 4 9 9 C 1.50707 * 109.46944 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.98427 * 100.00598 * 9 8 6 11 11 C 1.38182 * 120.04582 * 180.23532 * 10 9 8 12 12 C 1.38490 * 120.02861 * 359.48470 * 11 10 9 13 13 F 1.35100 * 120.01788 * 180.26005 * 12 11 10 14 14 C 1.38400 * 119.97428 * 0.51025 * 12 11 10 15 15 C 1.38443 * 119.98666 * 279.97831 * 9 8 6 16 16 F 1.35098 * 120.01606 * 0.05068 * 15 9 8 17 17 C 1.46931 * 118.73814 * 53.31117 * 5 4 2 18 18 C 1.53192 * 108.77087 * 306.64209 * 17 5 4 19 19 C 1.53040 * 109.31337 * 54.63942 * 18 17 5 20 20 H 1.08998 * 109.45879 * 178.62729 * 19 18 17 21 21 N 1.46489 * 109.46371 * 58.65146 * 19 18 17 22 22 C 1.36933 * 120.00258 * 85.00208 * 21 19 18 23 23 H 1.07999 * 120.00207 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00511 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99444 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00086 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47669 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47167 * 120.00566 * 26 24 22 29 29 H 1.48501 * 109.46964 * 239.99890 * 26 24 22 30 30 H 1.09003 * 109.46837 * 299.92990 * 1 2 3 31 31 H 1.08998 * 109.48033 * 59.92928 * 1 2 3 32 32 H 1.09007 * 109.47224 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50973 * 65.65128 * 4 2 1 34 34 H 1.08999 * 109.43245 * 305.37131 * 4 2 1 35 35 H 1.09000 * 109.46872 * 60.00396 * 8 6 5 36 36 H 1.08999 * 109.47515 * 300.00523 * 8 6 5 37 37 H 1.08002 * 119.97328 * 359.94945 * 10 9 8 38 38 H 1.08009 * 119.98529 * 179.74687 * 11 10 9 39 39 H 1.08001 * 120.02437 * 179.72196 * 14 12 11 40 40 H 1.08997 * 109.58814 * 66.42776 * 17 5 4 41 41 H 1.09000 * 109.58484 * 186.71433 * 17 5 4 42 42 H 1.09005 * 109.49561 * 174.58669 * 18 17 5 43 43 H 1.08993 * 109.50013 * 294.68339 * 18 17 5 44 44 H 0.97002 * 120.00334 * 265.00398 * 21 19 18 45 45 H 0.97000 * 119.99168 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8282 -1.1691 6 6 4.2817 -0.3844 -2.1773 7 8 3.7738 0.1067 -3.1630 8 6 5.7813 -0.4982 -2.0797 9 6 6.4102 0.0667 -3.3273 10 6 6.9352 1.3454 -3.3182 11 6 7.5078 1.8664 -4.4628 12 6 7.5659 1.1040 -5.6175 13 9 8.1305 1.6117 -6.7349 14 6 7.0406 -0.1764 -5.6278 15 6 6.4624 -0.6955 -4.4819 16 9 5.9488 -1.9450 -4.4907 17 6 4.1059 -1.4255 0.0313 18 6 3.5708 -0.6940 1.2664 19 6 2.0408 -0.7229 1.2485 20 1 1.6578 -0.2242 2.1388 21 7 1.5790 -2.1130 1.2308 22 6 1.4475 -2.8057 2.4047 23 1 1.6839 -2.3272 3.3435 24 6 1.0104 -4.1232 2.3880 25 7 0.7218 -4.7063 1.2438 26 14 0.8318 -5.0683 3.9892 27 1 1.2167 -4.1938 5.1259 28 1 -0.5790 -5.5020 4.1533 29 1 1.7161 -6.2610 3.9614 30 1 -0.3633 0.5128 0.8906 31 1 -0.3635 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7651 -0.1495 -2.1345 34 1 1.6031 -1.7149 -1.2975 35 1 6.0599 -1.5467 -1.9746 36 1 6.1323 0.0597 -1.2116 37 1 6.8937 1.9393 -2.4171 38 1 7.9141 2.8672 -4.4557 39 1 7.0815 -0.7700 -6.5291 40 1 3.8386 -2.4807 0.0873 41 1 5.1903 -1.3251 -0.0142 42 1 3.9335 -1.1885 2.1676 43 1 3.9154 0.3399 1.2546 44 1 1.3664 -2.5428 0.3877 45 1 0.4168 -5.6270 1.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036038690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:25 Heat of formation + Delta-G solvation = -91.615535 kcal Electronic energy + Delta-G solvation = -29643.462800 eV Core-core repulsion = 25296.918662 eV Total energy + Delta-G solvation = -4346.544138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.24490 -49.11768 -40.25742 -39.03323 -37.61608 -34.30996 -33.22206 -32.53663 -31.42434 -31.04849 -29.21014 -28.08001 -25.94108 -24.77095 -23.51358 -23.45582 -22.26157 -21.67290 -19.63311 -18.44890 -18.17233 -17.46462 -17.43257 -16.98676 -16.29460 -16.07144 -15.84904 -15.44348 -15.27262 -15.08284 -14.64961 -14.57766 -14.32058 -14.11425 -13.99092 -13.53984 -13.36981 -13.13071 -12.93043 -12.55709 -12.25506 -12.22389 -12.16839 -11.89112 -11.66608 -11.48416 -11.36198 -11.20743 -10.94984 -10.82465 -10.51772 -10.49966 -10.18425 -9.86532 -9.69627 -9.58401 -9.29041 -8.97224 -8.81445 -8.25200 -7.01099 -5.82263 -3.10895 0.68284 0.77605 2.78072 2.98724 3.35776 3.38828 3.44992 3.47189 3.64406 4.16847 4.27782 4.32504 4.54438 4.56503 4.69080 4.83256 5.13143 5.18131 5.27607 5.30101 5.34301 5.47531 5.53473 5.54718 5.56962 5.67270 5.71581 5.76517 5.78429 5.91013 5.95217 6.04519 6.06842 6.22822 6.28135 6.37650 6.47252 6.50538 6.60546 6.65268 6.73431 6.89996 6.97761 7.65863 7.67946 8.34704 8.36184 9.47894 10.04557 10.39419 11.40118 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002582 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.441616 B =10843.570985 C =11272.924939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.515 3.485 7 O -0.547 6.547 8 C -0.103 4.103 9 C -0.105 4.105 10 C -0.051 4.051 11 C -0.164 4.164 12 C 0.125 3.875 13 F -0.134 7.134 14 C -0.192 4.192 15 C 0.149 3.851 16 F -0.125 7.125 17 C 0.111 3.889 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.854 12.615 -8.705 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.303 3.697 7 O -0.425 6.425 8 C -0.142 4.142 9 C -0.106 4.106 10 C -0.070 4.070 11 C -0.182 4.182 12 C 0.106 3.894 13 F -0.113 7.113 14 C -0.212 4.212 15 C 0.130 3.870 16 F -0.103 7.103 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.554 12.758 -9.084 20.712 hybrid contribution -0.152 -1.013 0.497 1.139 sum 13.402 11.744 -8.587 19.781 Atomic orbital electron populations 1.21666 0.94214 1.03209 1.00432 1.21622 0.96529 0.98824 0.95818 0.91716 1.21552 0.78534 1.01612 0.98571 1.48096 1.07168 1.59642 1.18197 1.20258 0.88524 0.78091 0.82866 1.90683 1.75342 1.45420 1.31077 1.20644 0.93128 1.04099 0.96348 1.19484 1.01509 0.95233 0.94411 1.20751 0.94709 0.93213 0.98282 1.21132 1.03934 1.01238 0.91939 1.17275 0.96842 0.92103 0.83198 1.91522 1.82445 1.87035 1.50260 1.20985 1.04286 0.96359 0.99537 1.17090 0.95691 0.80658 0.93589 1.91551 1.84268 1.37620 1.96905 1.21774 0.96298 0.99254 0.83765 1.22526 1.00571 0.98569 0.97434 1.20208 0.90766 0.87381 0.94843 0.93134 1.42487 1.78998 1.07681 1.06957 1.19254 1.37217 0.93828 0.86562 0.91204 1.24716 1.02272 0.97221 0.96601 1.69663 1.51719 1.12978 1.23603 0.86169 0.77306 0.79969 0.83018 1.20647 1.21975 1.21986 0.92805 0.93776 0.91027 0.89851 0.90681 0.87401 0.87215 0.83911 0.84005 0.83468 0.89549 0.91207 0.90681 0.93303 0.78080 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.06 37.16 0.34 -1.84 16 2 C -0.11 -1.72 2.65 -90.72 -0.24 -1.96 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.99 5.40 -3.94 -0.02 1.97 16 5 N -0.60 -9.25 2.98 -173.04 -0.52 -9.76 16 6 C 0.52 7.80 7.68 -10.99 -0.08 7.71 16 7 O -0.55 -10.03 15.36 5.56 0.09 -9.95 16 8 C -0.10 -1.13 3.90 -29.03 -0.11 -1.25 16 9 C -0.10 -1.18 4.43 -104.54 -0.46 -1.64 16 10 C -0.05 -0.47 9.66 -39.60 -0.38 -0.85 16 11 C -0.16 -1.43 10.02 -39.51 -0.40 -1.83 16 12 C 0.13 1.27 7.30 -39.43 -0.29 0.99 16 13 F -0.13 -1.39 17.27 2.25 0.04 -1.35 16 14 C -0.19 -2.08 10.01 -39.44 -0.39 -2.47 16 15 C 0.15 1.84 7.12 -39.43 -0.28 1.56 16 16 F -0.13 -1.74 16.66 2.25 0.04 -1.70 16 17 C 0.11 1.64 6.09 -3.71 -0.02 1.61 16 18 C -0.15 -2.29 5.78 -26.61 -0.15 -2.45 16 19 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -16.07 3.64 -53.39 -0.19 -16.27 16 22 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 26 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.32 7.54 -51.92 -0.39 0.93 16 33 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 34 H 0.08 1.40 6.64 -51.93 -0.34 1.06 16 35 H 0.11 1.12 7.74 -51.93 -0.40 0.72 16 36 H 0.11 0.90 7.55 -51.93 -0.39 0.51 16 37 H 0.14 0.93 8.04 -52.49 -0.42 0.50 16 38 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 41 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.38 9.29 5.94 -40.82 -0.24 9.05 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -30.43 372.07 -8.36 -38.78 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.19 Total: 8.25 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.92 Total: -4.04 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.01 Total: -52.05 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.43 -8.36 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036038690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.835 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds