Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49517 * 2 1 4 4 C 1.52760 * 109.58941 * 240.05170 * 2 1 3 5 5 N 1.46920 * 109.01007 * 185.53391 * 4 2 1 6 6 C 1.34776 * 120.63270 * 233.58170 * 5 4 2 7 7 O 1.21278 * 119.99963 * 359.72254 * 6 5 4 8 8 C 1.50699 * 119.99966 * 179.71676 * 6 5 4 9 9 C 1.50707 * 109.46944 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.98427 * 100.00598 * 9 8 6 11 11 C 1.38182 * 120.04582 * 180.23532 * 10 9 8 12 12 C 1.38490 * 120.02861 * 359.48470 * 11 10 9 13 13 F 1.35100 * 120.01788 * 180.26005 * 12 11 10 14 14 C 1.38400 * 119.97428 * 0.51025 * 12 11 10 15 15 C 1.38443 * 119.98666 * 279.97831 * 9 8 6 16 16 F 1.35098 * 120.01606 * 0.05068 * 15 9 8 17 17 C 1.46931 * 118.73814 * 53.31117 * 5 4 2 18 18 C 1.53192 * 108.77087 * 306.64209 * 17 5 4 19 19 C 1.53040 * 109.31337 * 54.63942 * 18 17 5 20 20 H 1.08998 * 109.45879 * 178.62729 * 19 18 17 21 21 N 1.46489 * 109.46371 * 58.65146 * 19 18 17 22 22 C 1.36933 * 120.00258 * 85.00208 * 21 19 18 23 23 H 1.07999 * 120.00207 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00511 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99444 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00086 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47669 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47167 * 120.00566 * 26 24 22 29 29 H 1.48501 * 109.46964 * 239.99890 * 26 24 22 30 30 H 1.09003 * 109.46837 * 299.92990 * 1 2 3 31 31 H 1.08998 * 109.48033 * 59.92928 * 1 2 3 32 32 H 1.09007 * 109.47224 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50973 * 65.65128 * 4 2 1 34 34 H 1.08999 * 109.43245 * 305.37131 * 4 2 1 35 35 H 1.09000 * 109.46872 * 60.00396 * 8 6 5 36 36 H 1.08999 * 109.47515 * 300.00523 * 8 6 5 37 37 H 1.08002 * 119.97328 * 359.94945 * 10 9 8 38 38 H 1.08009 * 119.98529 * 179.74687 * 11 10 9 39 39 H 1.08001 * 120.02437 * 179.72196 * 14 12 11 40 40 H 1.08997 * 109.58814 * 66.42776 * 17 5 4 41 41 H 1.09000 * 109.58484 * 186.71433 * 17 5 4 42 42 H 1.09005 * 109.49561 * 174.58669 * 18 17 5 43 43 H 1.08993 * 109.50013 * 294.68339 * 18 17 5 44 44 H 0.97002 * 120.00334 * 265.00398 * 21 19 18 45 45 H 0.97000 * 119.99168 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8282 -1.1691 6 6 4.2817 -0.3844 -2.1773 7 8 3.7738 0.1067 -3.1630 8 6 5.7813 -0.4982 -2.0797 9 6 6.4102 0.0667 -3.3273 10 6 6.9352 1.3454 -3.3182 11 6 7.5078 1.8664 -4.4628 12 6 7.5659 1.1040 -5.6175 13 9 8.1305 1.6117 -6.7349 14 6 7.0406 -0.1764 -5.6278 15 6 6.4624 -0.6955 -4.4819 16 9 5.9488 -1.9450 -4.4907 17 6 4.1059 -1.4255 0.0313 18 6 3.5708 -0.6940 1.2664 19 6 2.0408 -0.7229 1.2485 20 1 1.6578 -0.2242 2.1388 21 7 1.5790 -2.1130 1.2308 22 6 1.4475 -2.8057 2.4047 23 1 1.6839 -2.3272 3.3435 24 6 1.0104 -4.1232 2.3880 25 7 0.7218 -4.7063 1.2438 26 14 0.8318 -5.0683 3.9892 27 1 1.2167 -4.1938 5.1259 28 1 -0.5790 -5.5020 4.1533 29 1 1.7161 -6.2610 3.9614 30 1 -0.3633 0.5128 0.8906 31 1 -0.3635 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7651 -0.1495 -2.1345 34 1 1.6031 -1.7149 -1.2975 35 1 6.0599 -1.5467 -1.9746 36 1 6.1323 0.0597 -1.2116 37 1 6.8937 1.9393 -2.4171 38 1 7.9141 2.8672 -4.4557 39 1 7.0815 -0.7700 -6.5291 40 1 3.8386 -2.4807 0.0873 41 1 5.1903 -1.3251 -0.0142 42 1 3.9335 -1.1885 2.1676 43 1 3.9154 0.3399 1.2546 44 1 1.3664 -2.5428 0.3877 45 1 0.4168 -5.6270 1.2322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036038690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -107.819030 kcal Electronic energy + Delta-G solvation = -29644.165436 eV Core-core repulsion = 25296.918662 eV Total energy + Delta-G solvation = -4347.246774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.07199 -50.02008 -41.43424 -39.94551 -38.88306 -35.83601 -34.61205 -33.63217 -32.91131 -31.79553 -30.88759 -29.05659 -27.23600 -26.18340 -25.22484 -24.22343 -23.13574 -22.98660 -20.83784 -19.60476 -19.25920 -19.17079 -18.30260 -18.19536 -17.25488 -16.93442 -16.78817 -16.66873 -16.34298 -16.17704 -16.09444 -15.84713 -15.51589 -15.44878 -14.89683 -14.82597 -14.72765 -14.38230 -14.12635 -13.90064 -13.57890 -13.13389 -13.02894 -12.96309 -12.89228 -12.84392 -12.72838 -12.57684 -12.36724 -12.31683 -12.03948 -11.93291 -11.86593 -11.55461 -11.12748 -10.95176 -10.78900 -10.06199 -9.63445 -9.56391 -8.89954 -7.87330 -5.13158 -0.10540 0.02329 1.49561 1.51153 1.59555 1.62662 1.99306 2.41286 2.61077 2.86260 3.37324 3.46942 3.50431 3.57359 3.61718 3.89014 3.91572 3.94635 4.09117 4.11278 4.14364 4.33490 4.42572 4.43959 4.50446 4.57388 4.70550 4.74697 4.79971 4.85519 4.88072 4.92744 5.01094 5.04836 5.07479 5.16475 5.21008 5.26559 5.33097 5.35422 5.50400 5.63062 5.68236 5.75918 6.34842 6.49449 7.16544 7.42107 8.19683 8.41929 9.36300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.002582 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.441616 B =10843.570985 C =11272.924939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.089 0.911 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.512 3.488 7 O -0.583 6.583 8 C -0.097 4.097 9 C -0.116 4.116 10 C -0.045 4.045 11 C -0.154 4.154 12 C 0.115 3.885 13 F -0.137 7.137 14 C -0.201 4.201 15 C 0.119 3.881 16 F -0.144 7.144 17 C 0.116 3.884 18 C -0.141 4.141 19 C 0.170 3.830 20 H 0.048 0.952 21 N -0.726 5.726 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.962 3.038 27 H -0.265 1.265 28 H -0.302 1.302 29 H -0.299 1.299 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.983 15.478 -7.415 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.107 0.893 4 C 0.001 3.999 5 N -0.332 5.332 6 C 0.302 3.698 7 O -0.463 6.463 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.063 4.063 11 C -0.172 4.172 12 C 0.096 3.904 13 F -0.116 7.116 14 C -0.221 4.221 15 C 0.100 3.900 16 F -0.123 7.123 17 C -0.006 4.006 18 C -0.182 4.182 19 C 0.062 3.938 20 H 0.066 0.934 21 N -0.367 5.367 22 C -0.353 4.353 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.794 3.206 27 H -0.189 1.189 28 H -0.230 1.230 29 H -0.227 1.227 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.168 0.832 37 H 0.195 0.805 38 H 0.189 0.811 39 H 0.170 0.830 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.718 15.670 -7.764 23.514 hybrid contribution -0.797 -1.778 0.024 1.949 sum 14.921 13.892 -7.739 21.807 Atomic orbital electron populations 1.21611 0.94430 1.01322 1.01707 1.21535 0.96316 0.99484 0.94275 0.89282 1.21345 0.79837 0.99848 0.98838 1.48143 1.06538 1.59714 1.18781 1.20984 0.90185 0.76863 0.81755 1.90667 1.76401 1.47015 1.32241 1.20711 0.89650 1.05280 0.97976 1.19674 1.02011 0.96133 0.93980 1.21156 0.93269 0.92326 0.99558 1.21508 1.02594 1.02149 0.90998 1.17463 0.97075 0.92093 0.83772 1.91516 1.82505 1.86974 1.50572 1.21104 1.04410 0.97029 0.99534 1.17442 0.97180 0.80539 0.94879 1.91497 1.84825 1.38872 1.97068 1.21754 0.98679 0.96910 0.83254 1.22391 0.97868 1.00614 0.97300 1.20479 0.92786 0.84948 0.95634 0.93433 1.42627 1.79160 1.09394 1.05528 1.19614 1.34264 0.93699 0.87740 0.90479 1.25397 1.03841 0.98576 0.99019 1.69821 1.54182 1.12750 1.25492 0.85217 0.76279 0.78634 0.80509 1.18915 1.23040 1.22715 0.92081 0.91937 0.94426 0.90290 0.93822 0.86850 0.83196 0.80503 0.81068 0.83022 0.93355 0.86931 0.91310 0.89856 0.79463 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.06 71.98 0.65 -3.48 16 2 C -0.10 -2.93 2.65 -10.86 -0.03 -2.95 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.12 4.14 5.40 86.22 0.47 4.60 16 5 N -0.60 -17.68 2.98 -819.75 -2.44 -20.13 16 6 C 0.51 14.58 7.68 87.66 0.67 15.25 16 7 O -0.58 -20.89 15.36 -3.02 -0.05 -20.94 16 8 C -0.10 -1.85 3.90 29.10 0.11 -1.73 16 9 C -0.12 -2.35 4.43 -19.81 -0.09 -2.43 16 10 C -0.05 -0.65 9.66 22.26 0.22 -0.43 16 11 C -0.15 -2.18 10.02 22.32 0.22 -1.96 16 12 C 0.12 2.16 7.30 22.37 0.16 2.32 16 13 F -0.14 -2.64 17.27 44.97 0.78 -1.87 16 14 C -0.20 -4.28 10.01 22.36 0.22 -4.05 16 15 C 0.12 2.87 7.12 22.37 0.16 3.03 16 16 F -0.14 -4.11 16.66 44.97 0.75 -3.36 16 17 C 0.12 3.17 6.09 86.36 0.53 3.70 16 18 C -0.14 -3.90 5.78 30.67 0.18 -3.73 16 19 C 0.17 5.83 2.53 45.02 0.11 5.95 16 20 H 0.05 1.67 8.08 -2.39 -0.02 1.66 16 21 N -0.73 -32.78 3.64 -322.83 -1.18 -33.96 16 22 C -0.22 -11.27 9.93 84.04 0.83 -10.43 16 23 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 24 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 25 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 26 Si 0.96 44.74 29.55 68.60 2.03 46.77 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.42 7.54 -2.38 -0.02 1.40 16 33 H 0.08 2.69 7.01 -2.39 -0.02 2.67 16 34 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 35 H 0.11 2.07 7.74 -2.39 -0.02 2.05 16 36 H 0.15 1.61 7.55 -2.39 -0.02 1.59 16 37 H 0.18 1.27 8.04 -2.91 -0.02 1.25 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.05 1.72 7.74 -2.39 -0.02 1.70 16 41 H 0.11 2.10 5.93 -2.39 -0.01 2.09 16 42 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.37 18.71 5.94 -92.71 -0.55 18.16 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -68.95 372.07 5.53 -63.42 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.47 Total: 27.59 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 4.89 Total: -0.07 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -3.33 Total: -111.53 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.53 Total: -5.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.95 5.53 -63.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036038690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.401 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds