Wall clock time and date at job start Tue Mar 31 2020 20:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 C 1.50707 * 109.47172 * 180.02562 * 8 6 5 10 10 C 1.38414 * 120.02196 * 269.72498 * 9 8 6 11 11 F 1.35107 * 120.01450 * 359.97101 * 10 9 8 12 12 C 1.38474 * 119.97709 * 179.74332 * 10 9 8 13 13 C 1.38212 * 120.01942 * 0.50871 * 12 10 9 14 14 C 1.38207 * 120.05203 * 359.76054 * 13 12 10 15 15 C 1.38414 * 120.02544 * 89.99762 * 9 8 6 16 16 F 1.35096 * 120.01515 * 359.97438 * 15 9 8 17 17 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 18 18 C 1.53196 * 108.77435 * 306.38547 * 17 5 4 19 19 C 1.53037 * 109.31040 * 54.63686 * 18 17 5 20 20 H 1.09000 * 109.46257 * 58.65576 * 19 18 17 21 21 N 1.46501 * 109.45789 * 178.61881 * 19 18 17 22 22 C 1.36942 * 119.99525 * 274.99671 * 21 19 18 23 23 H 1.07994 * 120.00259 * 359.97438 * 22 21 19 24 24 C 1.38819 * 119.99618 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00052 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47415 * 89.99384 * 26 24 22 28 28 H 1.48495 * 109.47169 * 210.00362 * 26 24 22 29 29 H 1.48500 * 109.46978 * 329.99816 * 26 24 22 30 30 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 32 32 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 33 33 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 34 34 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 35 35 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 36 36 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 37 37 H 1.07997 * 119.99445 * 180.22660 * 12 10 9 38 38 H 1.07999 * 119.97386 * 179.74722 * 13 12 10 39 39 H 1.08000 * 119.99123 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.58534 * 186.60110 * 17 5 4 41 41 H 1.08995 * 109.70522 * 66.24252 * 17 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 18 17 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 18 17 5 44 44 H 0.96998 * 120.00238 * 95.00237 * 21 19 18 45 45 H 0.97001 * 119.99908 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 6 6.4085 0.0677 -3.3299 10 6 6.6536 -0.7551 -4.4156 11 9 6.3303 -2.0656 -4.3570 12 6 7.2261 -0.2337 -5.5636 13 6 7.5623 1.1056 -5.6217 14 6 7.3231 1.9270 -4.5362 15 6 6.7460 1.4087 -3.3890 16 9 6.5119 2.2119 -2.3283 17 6 4.1060 -1.4254 0.0296 18 6 3.5716 -0.6942 1.2652 19 6 2.0416 -0.7231 1.2480 20 1 1.6980 -1.7574 1.2348 21 7 1.5274 -0.0534 2.4452 22 6 1.3967 -0.7503 3.6167 23 1 1.6723 -1.7937 3.6580 24 6 0.9089 -0.1159 4.7510 25 7 0.5726 1.1556 4.7006 26 14 0.7313 -1.0664 6.3493 27 1 1.9885 -0.9581 7.1320 28 1 -0.3933 -0.5025 7.1382 29 1 0.4574 -2.4945 6.0480 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5129 -0.8904 33 1 1.7632 -0.1574 -2.1390 34 1 1.6059 -1.7212 -1.3010 35 1 6.1317 0.0604 -1.2141 36 1 6.0591 -1.5460 -1.9773 37 1 7.4141 -0.8747 -6.4122 38 1 8.0124 1.5106 -6.5160 39 1 7.5866 2.9733 -4.5825 40 1 5.1902 -1.3228 -0.0153 41 1 3.8410 -2.4811 0.0867 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.2795 0.8837 2.4081 45 1 0.2315 1.5988 5.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036153230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:43 Heat of formation + Delta-G solvation = -92.690174 kcal Electronic energy + Delta-G solvation = -29633.917334 eV Core-core repulsion = 25287.326597 eV Total energy + Delta-G solvation = -4346.590738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.26015 -49.20911 -40.27188 -39.02170 -37.61418 -34.62998 -33.48328 -32.65272 -31.47086 -30.58612 -29.38116 -28.40442 -26.07294 -24.89169 -23.16851 -22.97052 -22.36844 -21.64394 -19.90343 -18.95417 -18.37693 -17.64217 -17.31643 -17.05517 -16.41762 -16.05618 -15.84427 -15.52066 -15.49127 -15.20172 -14.93377 -14.66537 -14.13421 -13.92255 -13.75087 -13.60237 -13.31875 -13.23116 -13.04904 -12.57950 -12.39452 -12.26875 -12.22816 -11.88363 -11.80456 -11.58939 -11.56121 -11.16126 -10.95182 -10.81646 -10.64592 -10.40903 -10.20965 -9.88830 -9.74595 -9.62972 -9.14483 -9.03626 -8.91488 -8.48588 -6.98003 -5.78888 -3.07642 0.65081 0.68614 2.63897 2.91192 3.20786 3.41133 3.46555 3.48242 3.61426 4.09355 4.11364 4.33252 4.46968 4.54383 4.56818 4.81946 5.02859 5.07401 5.15328 5.25299 5.27640 5.35615 5.45863 5.52099 5.57919 5.59180 5.63238 5.68148 5.71913 5.78635 5.82390 5.96310 6.08197 6.14186 6.29344 6.37721 6.43021 6.44388 6.52636 6.62820 6.80075 6.91663 7.04521 7.48065 7.67116 8.19532 8.39311 9.50725 10.08275 10.43162 11.43602 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.002528 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.744784 B =11073.521523 C =11250.028686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.604 5.604 6 C 0.520 3.480 7 O -0.543 6.543 8 C -0.104 4.104 9 C -0.134 4.134 10 C 0.141 3.859 11 F -0.129 7.129 12 C -0.165 4.165 13 C -0.063 4.063 14 C -0.164 4.164 15 C 0.143 3.857 16 F -0.126 7.126 17 C 0.105 3.895 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.019 -2.847 -20.468 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.307 3.693 7 O -0.420 6.420 8 C -0.144 4.144 9 C -0.136 4.136 10 C 0.121 3.879 11 F -0.107 7.107 12 C -0.184 4.184 13 C -0.082 4.082 14 C -0.183 4.183 15 C 0.123 3.877 16 F -0.104 7.104 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.677 -2.738 -20.773 25.582 hybrid contribution -0.218 -0.267 1.351 1.395 sum 14.459 -3.005 -19.422 24.399 Atomic orbital electron populations 1.21653 0.94088 1.01760 1.01844 1.21744 0.96604 1.00058 0.94588 0.91255 1.21715 0.78262 1.00829 0.99382 1.48122 1.07240 1.60255 1.18045 1.20223 0.88443 0.77849 0.82767 1.90684 1.75266 1.44867 1.31208 1.20564 0.93202 1.04129 0.96490 1.19327 1.04441 0.92990 0.96855 1.17147 0.98364 0.78240 0.94099 1.91523 1.90372 1.32219 1.96618 1.21164 1.02751 0.96921 0.97533 1.20830 0.97093 0.92175 0.98052 1.21193 1.02799 1.01779 0.92520 1.17179 0.98469 0.87034 0.84973 1.91548 1.92119 1.72345 1.54432 1.21907 0.97539 0.97556 0.84818 1.22700 1.00476 1.00458 0.95750 1.20184 0.90300 0.95701 0.86426 0.93398 1.42412 1.76476 1.11423 1.05754 1.19212 1.35913 0.94079 0.87711 0.91239 1.24734 1.02070 0.96030 0.98057 1.69658 1.49957 1.09513 1.28884 0.86223 0.77268 0.78898 0.83987 1.21792 1.21829 1.20804 0.93052 0.90730 0.93841 0.89427 0.91553 0.86943 0.87143 0.83998 0.83910 0.83925 0.90571 0.91231 0.90465 0.92114 0.78208 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.81 5.72 -3.71 -0.02 1.78 16 5 N -0.60 -8.68 2.97 -172.77 -0.51 -9.19 16 6 C 0.52 7.76 7.69 -10.99 -0.08 7.67 16 7 O -0.54 -9.82 15.45 5.56 0.09 -9.73 16 8 C -0.10 -1.21 3.83 -29.03 -0.11 -1.32 16 9 C -0.13 -1.58 4.38 -104.49 -0.46 -2.03 16 10 C 0.14 1.53 7.24 -39.43 -0.29 1.25 16 11 F -0.13 -1.49 16.47 2.25 0.04 -1.45 16 12 C -0.16 -1.35 10.03 -39.50 -0.40 -1.75 16 13 C -0.06 -0.44 10.04 -39.60 -0.40 -0.84 16 14 C -0.16 -1.41 10.03 -39.50 -0.40 -1.81 16 15 C 0.14 1.63 7.24 -39.43 -0.29 1.35 16 16 F -0.13 -1.61 16.48 2.25 0.04 -1.58 16 17 C 0.11 1.35 6.34 -3.71 -0.02 1.32 16 18 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 19 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.21 4.41 -53.38 -0.24 -17.45 16 22 C -0.24 -6.34 9.93 -15.05 -0.15 -6.49 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 26 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.44 7.37 -51.93 -0.38 1.05 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.18 7.19 -51.93 -0.37 0.81 16 36 H 0.11 1.06 7.43 -51.93 -0.39 0.67 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.38 9.95 7.51 -40.82 -0.31 9.65 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -32.14 374.83 -8.44 -40.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.31 Total: 7.77 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.89 Total: -4.63 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.02 Total: -53.56 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.14 -8.44 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.104 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds