Wall clock time and date at job start Tue Mar 31 2020 20:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 C 1.50707 * 109.47172 * 180.02562 * 8 6 5 10 10 C 1.38414 * 120.02196 * 269.72498 * 9 8 6 11 11 F 1.35107 * 120.01450 * 359.97101 * 10 9 8 12 12 C 1.38474 * 119.97709 * 179.74332 * 10 9 8 13 13 C 1.38212 * 120.01942 * 0.50871 * 12 10 9 14 14 C 1.38207 * 120.05203 * 359.76054 * 13 12 10 15 15 C 1.38414 * 120.02544 * 89.99762 * 9 8 6 16 16 F 1.35096 * 120.01515 * 359.97438 * 15 9 8 17 17 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 18 18 C 1.53196 * 108.77435 * 306.38547 * 17 5 4 19 19 C 1.53037 * 109.31040 * 54.63686 * 18 17 5 20 20 H 1.09000 * 109.46257 * 58.65576 * 19 18 17 21 21 N 1.46501 * 109.45789 * 178.61881 * 19 18 17 22 22 C 1.36942 * 119.99525 * 274.99671 * 21 19 18 23 23 H 1.07994 * 120.00259 * 359.97438 * 22 21 19 24 24 C 1.38819 * 119.99618 * 180.02562 * 22 21 19 25 25 N 1.31616 * 120.00052 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47415 * 89.99384 * 26 24 22 28 28 H 1.48495 * 109.47169 * 210.00362 * 26 24 22 29 29 H 1.48500 * 109.46978 * 329.99816 * 26 24 22 30 30 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 32 32 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 33 33 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 34 34 H 1.08996 * 109.70366 * 305.23575 * 4 2 1 35 35 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 36 36 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 37 37 H 1.07997 * 119.99445 * 180.22660 * 12 10 9 38 38 H 1.07999 * 119.97386 * 179.74722 * 13 12 10 39 39 H 1.08000 * 119.99123 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.58534 * 186.60110 * 17 5 4 41 41 H 1.08995 * 109.70522 * 66.24252 * 17 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 18 17 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 18 17 5 44 44 H 0.96998 * 120.00238 * 95.00237 * 21 19 18 45 45 H 0.97001 * 119.99908 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 6 6.4085 0.0677 -3.3299 10 6 6.6536 -0.7551 -4.4156 11 9 6.3303 -2.0656 -4.3570 12 6 7.2261 -0.2337 -5.5636 13 6 7.5623 1.1056 -5.6217 14 6 7.3231 1.9270 -4.5362 15 6 6.7460 1.4087 -3.3890 16 9 6.5119 2.2119 -2.3283 17 6 4.1060 -1.4254 0.0296 18 6 3.5716 -0.6942 1.2652 19 6 2.0416 -0.7231 1.2480 20 1 1.6980 -1.7574 1.2348 21 7 1.5274 -0.0534 2.4452 22 6 1.3967 -0.7503 3.6167 23 1 1.6723 -1.7937 3.6580 24 6 0.9089 -0.1159 4.7510 25 7 0.5726 1.1556 4.7006 26 14 0.7313 -1.0664 6.3493 27 1 1.9885 -0.9581 7.1320 28 1 -0.3933 -0.5025 7.1382 29 1 0.4574 -2.4945 6.0480 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5129 -0.8904 33 1 1.7632 -0.1574 -2.1390 34 1 1.6059 -1.7212 -1.3010 35 1 6.1317 0.0604 -1.2141 36 1 6.0591 -1.5460 -1.9773 37 1 7.4141 -0.8747 -6.4122 38 1 8.0124 1.5106 -6.5160 39 1 7.5866 2.9733 -4.5825 40 1 5.1902 -1.3228 -0.0153 41 1 3.8410 -2.4811 0.0867 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.2795 0.8837 2.4081 45 1 0.2315 1.5988 5.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036153230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:42 Heat of formation + Delta-G solvation = -110.837247 kcal Electronic energy + Delta-G solvation = -29634.704250 eV Core-core repulsion = 25287.326597 eV Total energy + Delta-G solvation = -4347.377654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.06931 -50.04609 -41.43184 -39.83149 -38.91496 -36.19843 -34.70228 -33.89778 -33.02616 -31.26125 -31.06278 -29.35914 -27.33848 -26.50856 -24.48471 -23.88335 -23.27015 -23.04718 -21.27198 -20.16907 -19.15140 -19.04504 -18.42443 -18.38099 -17.33938 -16.95693 -16.69881 -16.62330 -16.45618 -16.36815 -16.31441 -15.70958 -15.49132 -15.45147 -15.03067 -14.79876 -14.62342 -14.32970 -14.10772 -13.76241 -13.63632 -13.36844 -13.17400 -12.96806 -12.95705 -12.84790 -12.78030 -12.63116 -12.50052 -12.29262 -12.15083 -12.05562 -11.86674 -11.67139 -11.17283 -11.07455 -10.83980 -9.89753 -9.74896 -9.71091 -8.97063 -7.91144 -5.18900 -0.05029 -0.01376 1.48448 1.49388 1.49878 1.57620 1.92304 2.40803 2.57892 2.88764 3.30979 3.41158 3.42068 3.50346 3.62482 3.77827 3.84213 3.89057 4.00428 4.07278 4.22245 4.28210 4.33630 4.34971 4.37247 4.48261 4.64313 4.74995 4.76814 4.80715 4.83598 4.84097 4.96139 5.00138 5.03072 5.05687 5.16803 5.20576 5.29399 5.38402 5.49038 5.55484 5.61640 5.78299 6.29848 6.33630 7.04398 7.36567 8.12492 8.35848 9.32558 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.002528 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.744784 B =11073.521523 C =11250.028686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.049 0.951 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.578 6.578 8 C -0.100 4.100 9 C -0.155 4.155 10 C 0.119 3.881 11 F -0.138 7.138 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.163 4.163 15 C 0.113 3.887 16 F -0.143 7.143 17 C 0.112 3.888 18 C -0.144 4.144 19 C 0.180 3.820 20 H 0.050 0.950 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.968 3.032 27 H -0.289 1.289 28 H -0.301 1.301 29 H -0.268 1.268 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.163 0.837 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.876 -4.439 -22.427 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.305 3.695 7 O -0.459 6.459 8 C -0.140 4.140 9 C -0.157 4.157 10 C 0.100 3.900 11 F -0.116 7.116 12 C -0.178 4.178 13 C -0.069 4.069 14 C -0.181 4.181 15 C 0.093 3.907 16 F -0.122 7.122 17 C -0.011 4.011 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.068 0.932 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.217 1.217 28 H -0.228 1.228 29 H -0.193 1.193 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.181 0.819 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.201 0.799 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.569 -4.384 -22.757 28.489 hybrid contribution -0.759 0.243 1.818 1.985 sum 15.810 -4.141 -20.939 26.562 Atomic orbital electron populations 1.21568 0.93917 1.02080 1.01151 1.21607 0.96721 0.98958 0.94714 0.93232 1.21585 0.79076 1.01294 0.97621 1.48209 1.06961 1.60142 1.18467 1.20812 0.89798 0.76766 0.82120 1.90657 1.76178 1.46353 1.32662 1.20582 0.90554 1.05623 0.97206 1.19433 1.05442 0.93484 0.97350 1.17441 0.99622 0.77999 0.94962 1.91493 1.90657 1.32737 1.96725 1.21578 1.01157 0.97847 0.97237 1.21325 0.95521 0.91391 0.98677 1.21568 1.01576 1.03122 0.91853 1.17567 1.00289 0.87145 0.85686 1.91499 1.92534 1.72741 1.55385 1.21965 0.99141 0.97768 0.82184 1.22491 0.98347 1.00049 0.97578 1.20418 0.91777 0.95346 0.85337 0.93191 1.42601 1.76894 1.10841 1.06746 1.19603 1.33629 0.94429 0.88426 0.90327 1.25507 1.03220 0.96936 1.01350 1.69824 1.52073 1.11190 1.29239 0.85204 0.76638 0.78209 0.80118 1.21658 1.22783 1.19293 0.92155 0.94024 0.91884 0.90159 0.89746 0.86176 0.85033 0.81417 0.79848 0.81898 0.87505 0.89117 0.91102 0.93779 0.79873 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.03 71.98 0.65 -3.64 16 2 C -0.10 -3.36 2.46 -10.71 -0.03 -3.38 16 3 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.13 3.68 5.72 86.36 0.49 4.17 16 5 N -0.61 -16.59 2.97 -818.92 -2.43 -19.02 16 6 C 0.52 14.96 7.69 87.66 0.67 15.63 16 7 O -0.58 -20.86 15.45 -3.03 -0.05 -20.90 16 8 C -0.10 -2.21 3.83 29.10 0.11 -2.10 16 9 C -0.15 -3.51 4.38 -19.78 -0.09 -3.59 16 10 C 0.12 2.41 7.24 22.37 0.16 2.57 16 11 F -0.14 -2.98 16.47 44.97 0.74 -2.24 16 12 C -0.16 -2.17 10.03 22.32 0.22 -1.95 16 13 C -0.05 -0.54 10.04 22.26 0.22 -0.32 16 14 C -0.16 -2.45 10.03 22.32 0.22 -2.23 16 15 C 0.11 2.49 7.24 22.37 0.16 2.65 16 16 F -0.14 -3.70 16.48 44.97 0.74 -2.96 16 17 C 0.11 2.61 6.34 86.37 0.55 3.16 16 18 C -0.14 -4.62 5.66 30.67 0.17 -4.44 16 19 C 0.18 6.71 2.19 45.02 0.10 6.81 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -35.67 4.41 -322.81 -1.42 -37.09 16 22 C -0.23 -12.24 9.93 84.03 0.83 -11.40 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 26 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.65 7.37 -2.39 -0.02 1.63 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.49 7.00 -2.39 -0.02 2.47 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 2.40 7.19 -2.39 -0.02 2.39 16 36 H 0.13 2.25 7.43 -2.39 -0.02 2.23 16 37 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.11 1.90 5.93 -2.39 -0.01 1.88 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.37 19.96 7.51 -92.71 -0.70 19.27 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.07 374.83 5.14 -66.93 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.32 Total: 28.77 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.93 Total: -2.02 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.57 Total: -115.22 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.48 Total: -5.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.07 5.14 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.907 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds