Wall clock time and date at job start Tue Mar 31 2020 20:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52362 * 2 1 4 4 C 1.53196 * 109.49731 * 120.07991 * 2 1 3 5 5 N 1.46929 * 108.77486 * 174.58144 * 4 2 1 6 6 C 1.34783 * 120.62687 * 126.36877 * 5 4 2 7 7 O 1.21278 * 119.99717 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99576 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47085 * 180.02562 * 8 6 5 10 10 C 1.38421 * 120.02475 * 269.73220 * 9 8 6 11 11 F 1.35098 * 120.01300 * 359.96857 * 10 9 8 12 12 C 1.38472 * 119.97196 * 179.69898 * 10 9 8 13 13 C 1.38205 * 120.02691 * 0.59211 * 12 10 9 14 14 C 1.38217 * 120.04697 * 359.67916 * 13 12 10 15 15 C 1.38417 * 120.02196 * 89.99677 * 9 8 6 16 16 F 1.35096 * 120.01630 * 359.97438 * 15 9 8 17 17 C 1.46918 * 118.73922 * 306.39780 * 5 4 2 18 18 C 1.53194 * 108.78089 * 53.60697 * 17 5 4 19 19 C 1.53037 * 109.49597 * 239.91745 * 2 1 3 20 20 H 1.09003 * 109.46385 * 298.69241 * 19 2 1 21 21 N 1.46498 * 109.45940 * 58.66366 * 19 2 1 22 22 C 1.36943 * 120.00047 * 204.99777 * 21 19 2 23 23 H 1.08001 * 119.99712 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99886 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99854 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47195 * 90.00264 * 26 24 22 28 28 H 1.48503 * 109.47112 * 210.00346 * 26 24 22 29 29 H 1.48501 * 109.47177 * 330.00036 * 26 24 22 30 30 H 1.09007 * 109.46638 * 299.91957 * 1 2 3 31 31 H 1.08992 * 109.47563 * 59.91555 * 1 2 3 32 32 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58804 * 294.37582 * 4 2 1 34 34 H 1.09003 * 109.58394 * 54.80159 * 4 2 1 35 35 H 1.08998 * 109.47580 * 300.00030 * 8 6 5 36 36 H 1.09005 * 109.47418 * 60.00678 * 8 6 5 37 37 H 1.07998 * 119.98848 * 180.31325 * 12 10 9 38 38 H 1.08002 * 119.98055 * 179.70656 * 13 12 10 39 39 H 1.08003 * 119.98031 * 180.02562 * 14 13 12 40 40 H 1.09008 * 109.58859 * 293.81127 * 17 5 4 41 41 H 1.09002 * 109.58786 * 173.39329 * 17 5 4 42 42 H 1.09003 * 109.49900 * 185.41596 * 18 17 5 43 43 H 1.08990 * 109.49871 * 65.31214 * 18 17 5 44 44 H 0.96996 * 120.00270 * 24.99851 * 21 19 2 45 45 H 0.97005 * 120.00144 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1696 6 6 4.2812 -0.3856 2.1779 7 8 3.7732 0.1057 3.1635 8 6 5.7806 -0.5003 2.0806 9 6 6.4096 0.0632 3.3288 10 6 6.7532 1.4029 3.3871 11 9 6.5253 2.2058 2.3248 12 6 7.3253 1.9209 4.5368 13 6 7.5646 1.0983 5.6213 14 6 7.2271 -0.2407 5.5621 15 6 6.6492 -0.7596 4.4157 16 9 6.3188 -2.0683 4.3584 17 6 4.1052 -1.4267 -0.0308 18 6 3.5708 -0.6950 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6968 -1.7574 -1.2352 21 7 1.5265 -0.0530 -2.4452 22 6 1.3963 -0.7493 -3.6172 23 1 1.6725 -1.7926 -3.6590 24 6 0.9085 -0.1145 -4.7512 25 7 0.5715 1.1568 -4.7001 26 14 0.7304 -1.0644 -6.3497 27 1 -0.6211 -1.6763 -6.4138 28 1 0.9102 -0.1398 -7.4977 29 1 1.7606 -2.1324 -6.4083 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8891 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1580 2.1389 34 1 1.6052 -1.7216 1.2980 35 1 6.0589 -1.5489 1.9756 36 1 6.1321 0.0576 1.2126 37 1 7.5888 2.9672 4.5844 38 1 8.0152 1.5021 6.5159 39 1 7.4142 -0.8825 6.4104 40 1 3.8375 -2.4820 -0.0868 41 1 5.1895 -1.3247 0.0137 42 1 3.9333 -1.1898 -2.1671 43 1 3.9158 0.3387 -1.2541 44 1 1.2781 0.8839 -2.4076 45 1 0.2310 1.6005 -5.4926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036153231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:46 Heat of formation + Delta-G solvation = -92.696723 kcal Electronic energy + Delta-G solvation = -29634.060332 eV Core-core repulsion = 25287.469310 eV Total energy + Delta-G solvation = -4346.591022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.26193 -49.20932 -40.27197 -39.02149 -37.61520 -34.63023 -33.48312 -32.65317 -31.47002 -30.58626 -29.38070 -28.40383 -26.07205 -24.89144 -23.16821 -22.97107 -22.36814 -21.64275 -19.90380 -18.95316 -18.37702 -17.64215 -17.31614 -17.05466 -16.41679 -16.05643 -15.84463 -15.52075 -15.49083 -15.20154 -14.93473 -14.66561 -14.13409 -13.92246 -13.75030 -13.60190 -13.31892 -13.23125 -13.04885 -12.57936 -12.39404 -12.26681 -12.22833 -11.88321 -11.80530 -11.58970 -11.56134 -11.16272 -10.94801 -10.82329 -10.64028 -10.41232 -10.20896 -9.88874 -9.74292 -9.63071 -9.14435 -9.03632 -8.91629 -8.48493 -6.97966 -5.78876 -3.07670 0.65077 0.68625 2.63920 2.91215 3.20825 3.41234 3.46475 3.48206 3.61449 4.09375 4.11376 4.33253 4.46966 4.54423 4.56827 4.81953 5.03000 5.07419 5.15341 5.25310 5.27681 5.35667 5.45854 5.52140 5.57938 5.59148 5.63194 5.68159 5.71930 5.78714 5.82393 5.96232 6.08143 6.14127 6.29375 6.37733 6.43013 6.44395 6.52610 6.62870 6.80148 6.91660 7.04516 7.48119 7.67061 8.19561 8.39321 9.50734 10.08286 10.43149 11.43604 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002528 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.931736 B =11071.988526 C =11251.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.604 5.604 6 C 0.520 3.480 7 O -0.543 6.543 8 C -0.104 4.104 9 C -0.134 4.134 10 C 0.143 3.857 11 F -0.126 7.126 12 C -0.164 4.164 13 C -0.063 4.063 14 C -0.165 4.165 15 C 0.141 3.859 16 F -0.129 7.129 17 C 0.105 3.895 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.064 -2.855 20.455 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.307 3.693 7 O -0.420 6.420 8 C -0.144 4.144 9 C -0.136 4.136 10 C 0.123 3.877 11 F -0.104 7.104 12 C -0.183 4.183 13 C -0.082 4.082 14 C -0.184 4.184 15 C 0.122 3.878 16 F -0.107 7.107 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.738 -2.741 20.756 25.604 hybrid contribution -0.240 -0.272 -1.347 1.395 sum 14.498 -3.013 19.410 24.413 Atomic orbital electron populations 1.21655 0.94088 1.01759 1.01841 1.21746 0.96605 1.00064 0.94599 0.91253 1.21719 0.78265 1.00819 0.99381 1.48128 1.07239 1.60273 1.18035 1.20223 0.88438 0.77849 0.82773 1.90683 1.75287 1.44853 1.31201 1.20564 0.93198 1.04138 0.96486 1.19330 1.04425 0.93036 0.96824 1.17180 0.98526 0.87045 0.84918 1.91549 1.92229 1.72360 1.54312 1.21191 1.02846 1.01764 0.92482 1.20832 0.97095 0.92154 0.98070 1.21166 1.02699 0.96947 0.97568 1.17143 0.98283 0.78302 0.94107 1.91519 1.90202 1.32381 1.96622 1.21916 0.97550 0.97544 0.84808 1.22699 1.00477 1.00453 0.95759 1.20185 0.90307 0.95690 0.86427 0.93409 1.42410 1.76465 1.11438 1.05752 1.19210 1.35919 0.94081 0.87702 0.91241 1.24731 1.02079 0.96015 0.98064 1.69659 1.49951 1.09479 1.28925 0.86224 0.77780 0.78670 0.83697 1.21768 1.21844 1.20814 0.93846 0.90731 0.93052 0.89407 0.91552 0.87150 0.86934 0.83926 0.83909 0.84000 0.91233 0.90555 0.90461 0.92114 0.78209 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.90 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.07 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.81 5.72 -3.71 -0.02 1.78 16 5 N -0.60 -8.68 2.97 -172.77 -0.51 -9.19 16 6 C 0.52 7.76 7.69 -10.99 -0.08 7.67 16 7 O -0.54 -9.82 15.45 5.56 0.09 -9.73 16 8 C -0.10 -1.21 3.83 -29.04 -0.11 -1.32 16 9 C -0.13 -1.58 4.39 -104.49 -0.46 -2.03 16 10 C 0.14 1.63 7.24 -39.43 -0.29 1.34 16 11 F -0.13 -1.61 16.47 2.25 0.04 -1.58 16 12 C -0.16 -1.41 10.02 -39.51 -0.40 -1.80 16 13 C -0.06 -0.44 10.04 -39.60 -0.40 -0.84 16 14 C -0.16 -1.36 10.03 -39.50 -0.40 -1.75 16 15 C 0.14 1.53 7.24 -39.43 -0.29 1.25 16 16 F -0.13 -1.49 16.48 2.25 0.04 -1.45 16 17 C 0.11 1.35 6.34 -3.71 -0.02 1.32 16 18 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 19 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 20 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 21 N -0.72 -17.22 4.41 -53.38 -0.24 -17.45 16 22 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 26 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.06 7.44 -51.93 -0.39 0.67 16 36 H 0.11 1.19 7.18 -51.93 -0.37 0.81 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.38 9.96 7.50 -40.82 -0.31 9.65 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -32.14 374.82 -8.44 -40.58 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.31 Total: 7.78 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.89 Total: -4.64 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.02 Total: -53.57 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.14 -8.44 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.117 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds