Wall clock time and date at job start Tue Mar 31 2020 20:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.52362 * 2 1 4 4 C 1.53196 * 109.49731 * 120.07991 * 2 1 3 5 5 N 1.46929 * 108.77486 * 174.58144 * 4 2 1 6 6 C 1.34783 * 120.62687 * 126.36877 * 5 4 2 7 7 O 1.21278 * 119.99717 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99576 * 180.02562 * 6 5 4 9 9 C 1.50706 * 109.47085 * 180.02562 * 8 6 5 10 10 C 1.38421 * 120.02475 * 269.73220 * 9 8 6 11 11 F 1.35098 * 120.01300 * 359.96857 * 10 9 8 12 12 C 1.38472 * 119.97196 * 179.69898 * 10 9 8 13 13 C 1.38205 * 120.02691 * 0.59211 * 12 10 9 14 14 C 1.38217 * 120.04697 * 359.67916 * 13 12 10 15 15 C 1.38417 * 120.02196 * 89.99677 * 9 8 6 16 16 F 1.35096 * 120.01630 * 359.97438 * 15 9 8 17 17 C 1.46918 * 118.73922 * 306.39780 * 5 4 2 18 18 C 1.53194 * 108.78089 * 53.60697 * 17 5 4 19 19 C 1.53037 * 109.49597 * 239.91745 * 2 1 3 20 20 H 1.09003 * 109.46385 * 298.69241 * 19 2 1 21 21 N 1.46498 * 109.45940 * 58.66366 * 19 2 1 22 22 C 1.36943 * 120.00047 * 204.99777 * 21 19 2 23 23 H 1.08001 * 119.99712 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99886 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99854 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47195 * 90.00264 * 26 24 22 28 28 H 1.48503 * 109.47112 * 210.00346 * 26 24 22 29 29 H 1.48501 * 109.47177 * 330.00036 * 26 24 22 30 30 H 1.09007 * 109.46638 * 299.91957 * 1 2 3 31 31 H 1.08992 * 109.47563 * 59.91555 * 1 2 3 32 32 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58804 * 294.37582 * 4 2 1 34 34 H 1.09003 * 109.58394 * 54.80159 * 4 2 1 35 35 H 1.08998 * 109.47580 * 300.00030 * 8 6 5 36 36 H 1.09005 * 109.47418 * 60.00678 * 8 6 5 37 37 H 1.07998 * 119.98848 * 180.31325 * 12 10 9 38 38 H 1.08002 * 119.98055 * 179.70656 * 13 12 10 39 39 H 1.08003 * 119.98031 * 180.02562 * 14 13 12 40 40 H 1.09008 * 109.58859 * 293.81127 * 17 5 4 41 41 H 1.09002 * 109.58786 * 173.39329 * 17 5 4 42 42 H 1.09003 * 109.49900 * 185.41596 * 18 17 5 43 43 H 1.08990 * 109.49871 * 65.31214 * 18 17 5 44 44 H 0.96996 * 120.00270 * 24.99851 * 21 19 2 45 45 H 0.97005 * 120.00144 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1696 6 6 4.2812 -0.3856 2.1779 7 8 3.7732 0.1057 3.1635 8 6 5.7806 -0.5003 2.0806 9 6 6.4096 0.0632 3.3288 10 6 6.7532 1.4029 3.3871 11 9 6.5253 2.2058 2.3248 12 6 7.3253 1.9209 4.5368 13 6 7.5646 1.0983 5.6213 14 6 7.2271 -0.2407 5.5621 15 6 6.6492 -0.7596 4.4157 16 9 6.3188 -2.0683 4.3584 17 6 4.1052 -1.4267 -0.0308 18 6 3.5708 -0.6950 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6968 -1.7574 -1.2352 21 7 1.5265 -0.0530 -2.4452 22 6 1.3963 -0.7493 -3.6172 23 1 1.6725 -1.7926 -3.6590 24 6 0.9085 -0.1145 -4.7512 25 7 0.5715 1.1568 -4.7001 26 14 0.7304 -1.0644 -6.3497 27 1 -0.6211 -1.6763 -6.4138 28 1 0.9102 -0.1398 -7.4977 29 1 1.7606 -2.1324 -6.4083 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8891 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1580 2.1389 34 1 1.6052 -1.7216 1.2980 35 1 6.0589 -1.5489 1.9756 36 1 6.1321 0.0576 1.2126 37 1 7.5888 2.9672 4.5844 38 1 8.0152 1.5021 6.5159 39 1 7.4142 -0.8825 6.4104 40 1 3.8375 -2.4820 -0.0868 41 1 5.1895 -1.3247 0.0137 42 1 3.9333 -1.1898 -2.1671 43 1 3.9158 0.3387 -1.2541 44 1 1.2781 0.8839 -2.4076 45 1 0.2310 1.6005 -5.4926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036153231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:45 Heat of formation + Delta-G solvation = -110.840006 kcal Electronic energy + Delta-G solvation = -29634.847084 eV Core-core repulsion = 25287.469310 eV Total energy + Delta-G solvation = -4347.377774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.06857 -50.04822 -41.43199 -39.83131 -38.91565 -36.19875 -34.70269 -33.89752 -33.02562 -31.26117 -31.06217 -29.35849 -27.33772 -26.50873 -24.48475 -23.88288 -23.26983 -23.04635 -21.27251 -20.16762 -19.15129 -19.04472 -18.42290 -18.38156 -17.33839 -16.95736 -16.69918 -16.62351 -16.45523 -16.36780 -16.31447 -15.70947 -15.49104 -15.45130 -15.03111 -14.79863 -14.62298 -14.33049 -14.10656 -13.76195 -13.63545 -13.36797 -13.17253 -12.96830 -12.95597 -12.86482 -12.76640 -12.63081 -12.50251 -12.29311 -12.14463 -12.05949 -11.86509 -11.67308 -11.17090 -11.07511 -10.84192 -9.89687 -9.74868 -9.71009 -8.97030 -7.91123 -5.18928 -0.05028 -0.01326 1.48439 1.49413 1.49986 1.57594 1.92365 2.40824 2.57909 2.88809 3.31024 3.41194 3.42125 3.50409 3.62507 3.77791 3.84326 3.89075 4.00426 4.07268 4.22275 4.28189 4.33661 4.35004 4.37391 4.48319 4.64237 4.74958 4.76719 4.80626 4.83564 4.84119 4.96149 5.00099 5.03105 5.05691 5.16758 5.20600 5.29412 5.38353 5.49026 5.55439 5.61626 5.78333 6.29855 6.33681 7.04441 7.36576 8.12504 8.35828 9.32564 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.002528 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.931736 B =11071.988526 C =11251.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.049 0.951 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.578 6.578 8 C -0.100 4.100 9 C -0.155 4.155 10 C 0.113 3.887 11 F -0.143 7.143 12 C -0.163 4.163 13 C -0.052 4.052 14 C -0.160 4.160 15 C 0.119 3.881 16 F -0.138 7.138 17 C 0.112 3.888 18 C -0.144 4.144 19 C 0.180 3.820 20 H 0.050 0.950 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.968 3.032 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.184 0.816 39 H 0.168 0.832 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 -4.443 22.409 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.305 3.695 7 O -0.458 6.458 8 C -0.140 4.140 9 C -0.157 4.157 10 C 0.093 3.907 11 F -0.122 7.122 12 C -0.181 4.181 13 C -0.069 4.069 14 C -0.178 4.178 15 C 0.100 3.900 16 F -0.116 7.116 17 C -0.011 4.011 18 C -0.185 4.185 19 C 0.071 3.929 20 H 0.068 0.932 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.181 0.819 38 H 0.202 0.798 39 H 0.186 0.814 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.201 0.799 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.664 -4.383 22.734 28.526 hybrid contribution -0.794 0.237 -1.810 1.991 sum 15.869 -4.146 20.923 26.586 Atomic orbital electron populations 1.21570 0.93923 1.02078 1.01147 1.21608 0.96715 0.98966 0.94726 0.93229 1.21589 0.79079 1.01281 0.97621 1.48216 1.06960 1.60160 1.18456 1.20812 0.89794 0.76766 0.82125 1.90656 1.76198 1.46339 1.32654 1.20582 0.90550 1.05633 0.97202 1.19435 1.05424 0.93534 0.97317 1.17566 1.00339 0.87155 0.85627 1.91499 1.92639 1.72753 1.55263 1.21567 1.01629 1.03110 0.91816 1.21327 0.95523 0.91367 0.98696 1.21579 1.01106 0.97873 0.97268 1.17439 0.99545 0.78062 0.94973 1.91490 1.90491 1.32902 1.96728 1.21974 0.99154 0.97747 0.82175 1.22489 0.98350 1.00049 0.97575 1.20420 0.91782 0.95341 0.85339 0.93190 1.42600 1.76881 1.10857 1.06746 1.19602 1.33636 0.94424 0.88419 0.90324 1.25504 1.03229 0.96915 1.01365 1.69825 1.52077 1.11161 1.29269 0.85207 0.77848 0.77490 0.79639 1.21763 1.22774 1.19178 0.91888 0.94032 0.92154 0.90137 0.89746 0.85040 0.86164 0.81899 0.79847 0.81420 0.89129 0.87487 0.91117 0.93769 0.79874 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.02 71.98 0.65 -3.64 16 2 C -0.10 -3.36 2.46 -10.72 -0.03 -3.39 16 3 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.13 3.68 5.72 86.36 0.49 4.17 16 5 N -0.61 -16.59 2.97 -818.89 -2.43 -19.02 16 6 C 0.52 14.95 7.69 87.65 0.67 15.62 16 7 O -0.58 -20.85 15.45 -3.02 -0.05 -20.89 16 8 C -0.10 -2.21 3.83 29.10 0.11 -2.10 16 9 C -0.15 -3.50 4.39 -19.78 -0.09 -3.59 16 10 C 0.11 2.49 7.24 22.37 0.16 2.65 16 11 F -0.14 -3.69 16.47 44.97 0.74 -2.95 16 12 C -0.16 -2.45 10.02 22.32 0.22 -2.22 16 13 C -0.05 -0.54 10.04 22.26 0.22 -0.32 16 14 C -0.16 -2.17 10.03 22.32 0.22 -1.95 16 15 C 0.12 2.41 7.24 22.37 0.16 2.57 16 16 F -0.14 -2.99 16.48 44.97 0.74 -2.25 16 17 C 0.11 2.62 6.34 86.36 0.55 3.16 16 18 C -0.14 -4.62 5.66 30.67 0.17 -4.44 16 19 C 0.18 6.71 2.19 45.02 0.10 6.81 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -35.67 4.41 -322.81 -1.42 -37.09 16 22 C -0.23 -12.24 9.93 84.03 0.83 -11.40 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 26 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.04 1.65 7.36 -2.39 -0.02 1.63 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.49 7.00 -2.39 -0.02 2.48 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.13 2.24 7.44 -2.39 -0.02 2.23 16 36 H 0.12 2.40 7.18 -2.38 -0.02 2.39 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.11 1.90 5.93 -2.39 -0.01 1.89 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.37 19.97 7.50 -92.71 -0.70 19.27 16 45 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -72.07 374.82 5.14 -66.93 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.32 Total: 28.78 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.93 Total: -2.03 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.58 Total: -115.23 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.48 Total: -5.19 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.07 5.14 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.913 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds