Wall clock time and date at job start Tue Mar 31 2020 20:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50158 * 2 1 4 4 C 1.53620 * 109.43368 * 120.22457 * 2 1 3 5 5 N 1.46925 * 108.54851 * 174.72419 * 4 2 1 6 6 C 1.34773 * 120.63355 * 126.36200 * 5 4 2 7 7 O 1.21282 * 119.99839 * 359.73351 * 6 5 4 8 8 C 1.50705 * 119.99891 * 179.72323 * 6 5 4 9 9 C 1.50704 * 109.46987 * 180.02562 * 8 6 5 10 10 C 1.38423 * 120.02666 * 89.99999 * 9 8 6 11 11 F 1.35104 * 120.01083 * 359.97427 * 10 9 8 12 12 C 1.38474 * 119.97422 * 179.70276 * 10 9 8 13 13 C 1.38204 * 120.02350 * 0.27307 * 12 10 9 14 14 C 1.38210 * 120.05262 * 0.02562 * 13 12 10 15 15 C 1.38418 * 120.02511 * 270.28146 * 9 8 6 16 16 F 1.35100 * 120.01497 * 359.97438 * 15 9 8 17 17 C 1.46931 * 118.73637 * 306.09866 * 5 4 2 18 18 C 1.53195 * 108.77756 * 53.85246 * 17 5 4 19 19 C 1.53039 * 109.31290 * 305.36800 * 18 17 5 20 20 H 1.08994 * 109.45841 * 181.37179 * 19 18 17 21 21 N 1.46494 * 109.45969 * 301.34334 * 19 18 17 22 22 C 1.36940 * 119.99896 * 275.00040 * 21 19 18 23 23 H 1.07996 * 120.00215 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99767 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00367 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00112 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46840 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47338 * 120.00146 * 26 24 22 29 29 H 1.48504 * 109.47484 * 240.00246 * 26 24 22 30 30 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47118 * 300.06382 * 1 2 3 32 32 H 1.09000 * 109.47166 * 60.06644 * 1 2 3 33 33 H 1.09004 * 109.74038 * 54.98657 * 4 2 1 34 34 H 1.09000 * 109.66739 * 294.41639 * 4 2 1 35 35 H 1.08997 * 109.46846 * 60.00740 * 8 6 5 36 36 H 1.09001 * 109.46745 * 300.00204 * 8 6 5 37 37 H 1.07999 * 119.98695 * 180.25515 * 12 10 9 38 38 H 1.08000 * 119.97471 * 179.97438 * 13 12 10 39 39 H 1.08000 * 119.98597 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.58618 * 173.64213 * 17 5 4 41 41 H 1.09005 * 109.58245 * 294.06888 * 17 5 4 42 42 H 1.09003 * 109.49154 * 65.32117 * 18 17 5 43 43 H 1.08998 * 109.49859 * 185.41539 * 18 17 5 44 44 H 0.97004 * 120.00447 * 95.00112 * 21 19 18 45 45 H 0.97001 * 120.00538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5046 -0.8295 1.1694 6 6 4.2811 -0.3870 2.1781 7 8 3.7731 0.1040 3.1639 8 6 5.7806 -0.5025 2.0812 9 6 6.4095 0.0599 3.3300 10 6 6.6483 -0.7636 4.4166 11 9 6.3172 -2.0722 4.3584 12 6 7.2318 -0.2470 5.5612 13 6 7.5706 1.0916 5.6209 14 6 7.3270 1.9161 4.5388 15 6 6.7434 1.4017 3.3933 16 9 6.5062 2.2078 2.3354 17 6 4.1053 -1.4267 -0.0312 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7228 -1.2486 20 1 1.6581 -0.2237 -2.1388 21 7 1.5783 -2.1127 -1.2314 22 6 1.4468 -2.8051 -2.4055 23 1 1.6836 -2.3263 -3.3442 24 6 1.0081 -4.1219 -2.3893 25 7 0.7181 -4.7050 -1.2455 26 14 0.8280 -5.0662 -3.9909 27 1 1.2138 -4.1915 -5.1273 28 1 1.7108 -6.2600 -3.9637 29 1 -0.5834 -5.4981 -4.1550 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6085 -1.7287 1.2980 34 1 1.7630 -0.1669 2.1431 35 1 6.1327 0.0556 1.2137 36 1 6.0581 -1.5513 1.9758 37 1 7.4220 -0.8903 6.4076 38 1 8.0253 1.4937 6.5142 39 1 7.5918 2.9621 4.5868 40 1 5.1895 -1.3246 0.0133 41 1 3.8375 -2.4818 -0.0875 42 1 3.9159 0.3392 -1.2540 43 1 3.9334 -1.1891 -2.1675 44 1 1.3653 -2.5427 -0.3884 45 1 0.4112 -5.6251 -1.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036153232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:50 Heat of formation + Delta-G solvation = -90.360760 kcal Electronic energy + Delta-G solvation = -30072.301566 eV Core-core repulsion = 25725.811839 eV Total energy + Delta-G solvation = -4346.489727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.17651 -49.14509 -40.15811 -38.97080 -37.61868 -34.28410 -33.35495 -32.63076 -31.38586 -30.52144 -29.18919 -28.36305 -25.97016 -24.79035 -23.48642 -23.09708 -22.40764 -21.64788 -19.60084 -18.37223 -18.14612 -17.55946 -17.40950 -17.01969 -16.31336 -15.94698 -15.77621 -15.42032 -15.38170 -15.18057 -14.60404 -14.58129 -14.27082 -13.96291 -13.78818 -13.45423 -13.32045 -13.06788 -12.98224 -12.54461 -12.38959 -12.22739 -12.15493 -11.82169 -11.68645 -11.45855 -11.30314 -11.17829 -10.93160 -10.79724 -10.49537 -10.46714 -10.16543 -9.84233 -9.71391 -9.56125 -9.05795 -8.97080 -8.94066 -8.22182 -6.98888 -5.80269 -3.08809 0.72311 0.75246 2.80407 3.02032 3.36251 3.40312 3.46559 3.48554 3.68860 4.18232 4.18782 4.41028 4.53314 4.56313 4.71055 4.88246 5.16126 5.19110 5.25381 5.32596 5.37470 5.49995 5.56001 5.59496 5.65834 5.67611 5.73131 5.79175 5.81994 5.88240 5.93301 6.07132 6.09127 6.25037 6.31411 6.40959 6.49929 6.52028 6.63296 6.68404 6.76044 6.92935 7.00645 7.67923 7.70031 8.36710 8.38166 9.49857 10.06661 10.41729 11.42156 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002910 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.794590 B = 9620.036091 C =10134.225083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.518 3.482 7 O -0.548 6.548 8 C -0.104 4.104 9 C -0.132 4.132 10 C 0.143 3.857 11 F -0.127 7.127 12 C -0.165 4.165 13 C -0.064 4.064 14 C -0.165 4.165 15 C 0.142 3.858 16 F -0.128 7.128 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.565 12.374 11.256 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.305 3.695 7 O -0.426 6.426 8 C -0.144 4.144 9 C -0.134 4.134 10 C 0.123 3.877 11 F -0.105 7.105 12 C -0.184 4.184 13 C -0.082 4.082 14 C -0.184 4.184 15 C 0.122 3.878 16 F -0.107 7.107 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.238 12.531 11.533 22.198 hybrid contribution -0.257 -0.944 -0.985 1.388 sum 13.981 11.587 10.548 21.000 Atomic orbital electron populations 1.21666 0.94250 1.03178 1.00416 1.21781 0.96488 0.98802 0.95731 0.91627 1.21745 0.78398 1.01534 0.98576 1.48089 1.07185 1.59721 1.18062 1.20183 0.88361 0.78063 0.82873 1.90670 1.75301 1.45453 1.31185 1.20563 0.93407 1.04211 0.96176 1.19362 1.04280 0.92933 0.96861 1.17178 0.98011 0.78447 0.94050 1.91544 1.90100 1.32278 1.96581 1.21173 1.02590 0.96965 0.97645 1.20813 0.97243 0.92156 0.98027 1.21158 1.02939 1.01684 0.92654 1.17152 0.98673 0.86943 0.84997 1.91525 1.92158 1.72212 1.54770 1.21779 0.96302 0.99202 0.83791 1.22528 1.00551 0.98650 0.97392 1.20207 0.90749 0.87360 0.94848 0.93112 1.42496 1.78973 1.07722 1.06954 1.19259 1.37091 0.93853 0.86566 0.91204 1.24711 1.02303 0.97219 0.96601 1.69658 1.51724 1.13018 1.23623 0.86168 0.77289 0.79963 0.83045 1.20644 1.21990 1.21985 0.91035 0.93788 0.92817 0.90584 0.89837 0.87174 0.87096 0.83990 0.83967 0.84037 0.91285 0.89493 0.93255 0.90661 0.78087 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.05 37.16 0.34 -1.91 16 2 C -0.11 -1.80 2.69 -90.28 -0.24 -2.04 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.08 5.44 -3.49 -0.02 2.06 16 5 N -0.60 -9.91 2.97 -172.50 -0.51 -10.42 16 6 C 0.52 8.57 7.69 -10.98 -0.08 8.48 16 7 O -0.55 -10.67 15.45 5.56 0.09 -10.58 16 8 C -0.10 -1.35 3.82 -29.03 -0.11 -1.46 16 9 C -0.13 -1.69 4.39 -104.49 -0.46 -2.15 16 10 C 0.14 1.74 7.24 -39.43 -0.29 1.45 16 11 F -0.13 -1.70 16.48 2.25 0.04 -1.66 16 12 C -0.16 -1.52 10.02 -39.51 -0.40 -1.91 16 13 C -0.06 -0.49 10.04 -39.60 -0.40 -0.89 16 14 C -0.17 -1.49 10.02 -39.51 -0.40 -1.88 16 15 C 0.14 1.68 7.24 -39.43 -0.29 1.39 16 16 F -0.13 -1.63 16.48 2.25 0.04 -1.59 16 17 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 18 C -0.15 -2.45 5.78 -26.61 -0.15 -2.60 16 19 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.46 3.64 -53.39 -0.19 -16.65 16 22 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.04 13.06 55.49 0.72 -26.31 16 26 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.46 6.64 -51.93 -0.34 1.11 16 34 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 35 H 0.11 1.24 7.20 -51.93 -0.37 0.87 16 36 H 0.11 1.31 7.44 -51.93 -0.39 0.92 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 41 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.38 9.46 5.92 -40.82 -0.24 9.22 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -31.05 370.92 -8.35 -39.40 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.16 Total: 8.81 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.93 Total: -3.28 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.02 Total: -53.39 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.07 Total: -3.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.05 -8.35 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.963 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds