Wall clock time and date at job start Tue Mar 31 2020 20:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50158 * 2 1 4 4 C 1.53620 * 109.43368 * 120.22457 * 2 1 3 5 5 N 1.46925 * 108.54851 * 174.72419 * 4 2 1 6 6 C 1.34773 * 120.63355 * 126.36200 * 5 4 2 7 7 O 1.21282 * 119.99839 * 359.73351 * 6 5 4 8 8 C 1.50705 * 119.99891 * 179.72323 * 6 5 4 9 9 C 1.50704 * 109.46987 * 180.02562 * 8 6 5 10 10 C 1.38423 * 120.02666 * 89.99999 * 9 8 6 11 11 F 1.35104 * 120.01083 * 359.97427 * 10 9 8 12 12 C 1.38474 * 119.97422 * 179.70276 * 10 9 8 13 13 C 1.38204 * 120.02350 * 0.27307 * 12 10 9 14 14 C 1.38210 * 120.05262 * 0.02562 * 13 12 10 15 15 C 1.38418 * 120.02511 * 270.28146 * 9 8 6 16 16 F 1.35100 * 120.01497 * 359.97438 * 15 9 8 17 17 C 1.46931 * 118.73637 * 306.09866 * 5 4 2 18 18 C 1.53195 * 108.77756 * 53.85246 * 17 5 4 19 19 C 1.53039 * 109.31290 * 305.36800 * 18 17 5 20 20 H 1.08994 * 109.45841 * 181.37179 * 19 18 17 21 21 N 1.46494 * 109.45969 * 301.34334 * 19 18 17 22 22 C 1.36940 * 119.99896 * 275.00040 * 21 19 18 23 23 H 1.07996 * 120.00215 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99767 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00367 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00112 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46840 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47338 * 120.00146 * 26 24 22 29 29 H 1.48504 * 109.47484 * 240.00246 * 26 24 22 30 30 H 1.08998 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47118 * 300.06382 * 1 2 3 32 32 H 1.09000 * 109.47166 * 60.06644 * 1 2 3 33 33 H 1.09004 * 109.74038 * 54.98657 * 4 2 1 34 34 H 1.09000 * 109.66739 * 294.41639 * 4 2 1 35 35 H 1.08997 * 109.46846 * 60.00740 * 8 6 5 36 36 H 1.09001 * 109.46745 * 300.00204 * 8 6 5 37 37 H 1.07999 * 119.98695 * 180.25515 * 12 10 9 38 38 H 1.08000 * 119.97471 * 179.97438 * 13 12 10 39 39 H 1.08000 * 119.98597 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.58618 * 173.64213 * 17 5 4 41 41 H 1.09005 * 109.58245 * 294.06888 * 17 5 4 42 42 H 1.09003 * 109.49154 * 65.32117 * 18 17 5 43 43 H 1.08998 * 109.49859 * 185.41539 * 18 17 5 44 44 H 0.97004 * 120.00447 * 95.00112 * 21 19 18 45 45 H 0.97001 * 120.00538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5046 -0.8295 1.1694 6 6 4.2811 -0.3870 2.1781 7 8 3.7731 0.1040 3.1639 8 6 5.7806 -0.5025 2.0812 9 6 6.4095 0.0599 3.3300 10 6 6.6483 -0.7636 4.4166 11 9 6.3172 -2.0722 4.3584 12 6 7.2318 -0.2470 5.5612 13 6 7.5706 1.0916 5.6209 14 6 7.3270 1.9161 4.5388 15 6 6.7434 1.4017 3.3933 16 9 6.5062 2.2078 2.3354 17 6 4.1053 -1.4267 -0.0312 18 6 3.5708 -0.6947 -1.2663 19 6 2.0408 -0.7228 -1.2486 20 1 1.6581 -0.2237 -2.1388 21 7 1.5783 -2.1127 -1.2314 22 6 1.4468 -2.8051 -2.4055 23 1 1.6836 -2.3263 -3.3442 24 6 1.0081 -4.1219 -2.3893 25 7 0.7181 -4.7050 -1.2455 26 14 0.8280 -5.0662 -3.9909 27 1 1.2138 -4.1915 -5.1273 28 1 1.7108 -6.2600 -3.9637 29 1 -0.5834 -5.4981 -4.1550 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6085 -1.7287 1.2980 34 1 1.7630 -0.1669 2.1431 35 1 6.1327 0.0556 1.2137 36 1 6.0581 -1.5513 1.9758 37 1 7.4220 -0.8903 6.4076 38 1 8.0253 1.4937 6.5142 39 1 7.5918 2.9621 4.5868 40 1 5.1895 -1.3246 0.0133 41 1 3.8375 -2.4818 -0.0875 42 1 3.9159 0.3392 -1.2540 43 1 3.9334 -1.1891 -2.1675 44 1 1.3653 -2.5427 -0.3884 45 1 0.4112 -5.6251 -1.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036153232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:49 Heat of formation + Delta-G solvation = -107.101091 kcal Electronic energy + Delta-G solvation = -30073.027481 eV Core-core repulsion = 25725.811839 eV Total energy + Delta-G solvation = -4347.215642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.06464 -50.04315 -41.46130 -39.86671 -38.96866 -35.89058 -34.68293 -33.89322 -32.95694 -31.25923 -30.93628 -29.37924 -27.33381 -26.28128 -25.27981 -23.87742 -23.28761 -23.06299 -20.90121 -19.66474 -19.27013 -19.12512 -18.42119 -18.33333 -17.32258 -16.88278 -16.72839 -16.60277 -16.44316 -16.33023 -16.20647 -15.89087 -15.55890 -15.45456 -14.94309 -14.76577 -14.62451 -14.41399 -14.16992 -13.76061 -13.64911 -13.40333 -13.00186 -12.98013 -12.95141 -12.89017 -12.70351 -12.62540 -12.44648 -12.27335 -12.05642 -11.98693 -11.91695 -11.59269 -11.18057 -11.04009 -10.84594 -9.89394 -9.74186 -9.63677 -8.92793 -7.88753 -5.15147 -0.04754 -0.00869 1.48735 1.50089 1.51197 1.58722 1.94335 2.41394 2.59668 2.89500 3.31398 3.41476 3.45087 3.51097 3.62601 3.86237 3.86500 3.90013 4.03304 4.08725 4.22210 4.28213 4.33167 4.35053 4.38282 4.51457 4.63566 4.68923 4.80734 4.83201 4.84734 4.95171 5.02324 5.03406 5.06064 5.12275 5.20612 5.20754 5.27617 5.28495 5.46579 5.59839 5.62300 5.78775 6.33047 6.38742 7.05415 7.40454 8.16555 8.40073 9.34776 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002910 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.794590 B = 9620.036091 C =10134.225083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.515 3.485 7 O -0.580 6.580 8 C -0.099 4.099 9 C -0.155 4.155 10 C 0.113 3.887 11 F -0.143 7.143 12 C -0.161 4.161 13 C -0.051 4.051 14 C -0.159 4.159 15 C 0.119 3.881 16 F -0.138 7.138 17 C 0.117 3.883 18 C -0.142 4.142 19 C 0.172 3.828 20 H 0.049 0.951 21 N -0.725 5.725 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.266 1.266 28 H -0.299 1.299 29 H -0.301 1.301 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.165 0.835 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.687 14.631 11.702 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.304 3.696 7 O -0.460 6.460 8 C -0.138 4.138 9 C -0.157 4.157 10 C 0.093 3.907 11 F -0.122 7.122 12 C -0.180 4.180 13 C -0.068 4.068 14 C -0.178 4.178 15 C 0.099 3.901 16 F -0.117 7.117 17 C -0.006 4.006 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.067 0.933 21 N -0.366 5.366 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.190 1.190 28 H -0.226 1.226 29 H -0.229 1.229 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.183 0.817 38 H 0.203 0.797 39 H 0.186 0.814 40 H 0.122 0.878 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.391 14.836 11.946 25.129 hybrid contribution -0.877 -1.526 -1.026 2.037 sum 15.514 13.310 10.920 23.175 Atomic orbital electron populations 1.21601 0.94075 1.01486 1.01770 1.21701 0.96590 0.99208 0.94233 0.89687 1.21574 0.79342 1.00069 0.98876 1.48146 1.06775 1.59706 1.18504 1.20819 0.89824 0.76993 0.81972 1.90641 1.76228 1.46872 1.32277 1.20553 0.90520 1.05121 0.97615 1.19436 1.05525 0.93742 0.97014 1.17572 0.99754 0.78015 0.95310 1.91497 1.90542 1.33370 1.96748 1.21566 1.01174 0.98128 0.97132 1.21334 0.95521 0.91117 0.98858 1.21578 1.01308 1.03207 0.91709 1.17466 1.00045 0.86692 0.85855 1.91491 1.92453 1.72334 1.55415 1.21741 0.98308 0.97159 0.83348 1.22403 0.98308 1.00273 0.97291 1.20437 0.92384 0.85144 0.95666 0.93311 1.42615 1.79107 1.09289 1.05625 1.19606 1.34476 0.93798 0.87660 0.90567 1.25401 1.03678 0.98501 0.99125 1.69814 1.53975 1.12845 1.25516 0.85202 0.76357 0.78594 0.80390 1.19025 1.22621 1.22869 0.94160 0.91840 0.92049 0.93209 0.90168 0.85359 0.86334 0.81731 0.79713 0.81383 0.87762 0.92736 0.90530 0.91118 0.79369 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.05 71.98 0.65 -3.61 16 2 C -0.10 -3.19 2.69 -10.57 -0.03 -3.21 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.12 4.40 5.44 86.51 0.47 4.87 16 5 N -0.60 -19.77 2.97 -818.05 -2.43 -22.19 16 6 C 0.51 16.90 7.69 87.66 0.67 17.58 16 7 O -0.58 -22.70 15.45 -3.04 -0.05 -22.75 16 8 C -0.10 -2.49 3.82 29.10 0.11 -2.38 16 9 C -0.15 -3.83 4.39 -19.78 -0.09 -3.92 16 10 C 0.11 2.66 7.24 22.37 0.16 2.82 16 11 F -0.14 -3.88 16.48 44.97 0.74 -3.14 16 12 C -0.16 -2.58 10.02 22.32 0.22 -2.35 16 13 C -0.05 -0.58 10.04 22.26 0.22 -0.36 16 14 C -0.16 -2.38 10.02 22.32 0.22 -2.15 16 15 C 0.12 2.62 7.24 22.37 0.16 2.79 16 16 F -0.14 -3.32 16.48 44.97 0.74 -2.58 16 17 C 0.12 3.60 6.08 86.36 0.53 4.12 16 18 C -0.14 -4.41 5.78 30.67 0.18 -4.24 16 19 C 0.17 6.29 2.53 45.02 0.11 6.41 16 20 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 21 N -0.73 -33.75 3.64 -322.83 -1.17 -34.93 16 22 C -0.22 -11.63 9.93 84.03 0.83 -10.80 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.08 -4.16 5.50 84.86 0.47 -3.70 16 25 N -0.97 -58.17 13.06 21.65 0.28 -57.88 16 26 Si 0.96 45.32 29.55 68.60 2.03 47.34 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 30 H 0.04 1.55 7.54 -2.39 -0.02 1.53 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 2.02 6.64 -2.39 -0.02 2.01 16 34 H 0.08 2.88 7.00 -2.39 -0.02 2.87 16 35 H 0.13 2.68 7.20 -2.39 -0.02 2.66 16 36 H 0.12 2.75 7.44 -2.39 -0.02 2.73 16 37 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.10 2.47 5.93 -2.39 -0.01 2.45 16 41 H 0.05 2.07 7.74 -2.38 -0.02 2.05 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.37 19.13 5.92 -92.71 -0.55 18.58 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.54 370.92 5.52 -64.02 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.47 Total: 30.24 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.91 Total: 1.87 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.32 Total: -115.01 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 1.48 Total: -5.71 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.54 5.52 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036153232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.081 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds