Wall clock time and date at job start Tue Mar 31 2020 20:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.49832 * 2 1 4 4 C 1.52763 * 109.59380 * 240.04247 * 2 1 3 5 5 N 1.46925 * 109.00823 * 185.53625 * 4 2 1 6 6 C 1.34775 * 120.63182 * 233.58398 * 5 4 2 7 7 O 1.21283 * 119.99683 * 359.72583 * 6 5 4 8 8 C 1.50696 * 120.00195 * 179.72094 * 6 5 4 9 9 C 1.50701 * 109.47131 * 180.02562 * 8 6 5 10 10 C 1.38205 * 120.00210 * 100.00352 * 9 8 6 11 11 C 1.38423 * 120.00379 * 180.02562 * 10 9 8 12 12 F 1.35104 * 120.00297 * 180.02562 * 11 10 9 13 13 C 1.38475 * 119.99778 * 0.26844 * 11 10 9 14 14 C 1.38159 * 119.99902 * 359.45371 * 13 11 10 15 15 C 1.38431 * 120.00248 * 280.01808 * 9 8 6 16 16 F 1.35105 * 119.99644 * 359.96241 * 15 9 8 17 17 C 1.46922 * 118.73797 * 53.31096 * 5 4 2 18 18 C 1.53186 * 108.77735 * 306.64164 * 17 5 4 19 19 C 1.53039 * 109.49646 * 120.06390 * 2 1 3 20 20 H 1.08998 * 109.46400 * 61.33056 * 19 2 1 21 21 N 1.46501 * 109.45086 * 301.36190 * 19 2 1 22 22 C 1.36932 * 120.00257 * 154.93525 * 21 19 2 23 23 H 1.08002 * 120.00106 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00206 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99774 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00318 * 180.02562 * 24 22 21 27 27 H 1.48512 * 109.46730 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47191 * 119.99477 * 26 24 22 29 29 H 1.48497 * 109.47250 * 240.00323 * 26 24 22 30 30 H 1.08998 * 109.47395 * 299.93467 * 1 2 3 31 31 H 1.09003 * 109.47101 * 59.93831 * 1 2 3 32 32 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50681 * 65.65943 * 4 2 1 34 34 H 1.09001 * 109.43086 * 305.37485 * 4 2 1 35 35 H 1.09001 * 109.47074 * 60.00285 * 8 6 5 36 36 H 1.08996 * 109.47492 * 300.00245 * 8 6 5 37 37 H 1.08000 * 119.99784 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.99842 * 179.72729 * 13 11 10 39 39 H 1.08000 * 120.00020 * 180.29348 * 14 13 11 40 40 H 1.09007 * 109.58563 * 66.43317 * 17 5 4 41 41 H 1.09001 * 109.59048 * 186.70747 * 17 5 4 42 42 H 1.09001 * 109.49701 * 174.58470 * 18 17 5 43 43 H 1.08991 * 109.50029 * 294.65104 * 18 17 5 44 44 H 0.97001 * 119.99760 * 334.94683 * 21 19 2 45 45 H 0.96999 * 120.00043 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1688 6 6 4.2820 -0.3846 -2.1770 7 8 3.7740 0.1064 -3.1628 8 6 5.7814 -0.4985 -2.0793 9 6 6.4105 0.0663 -3.3268 10 6 6.9355 1.3447 -3.3182 11 6 7.5128 1.8637 -4.4642 12 9 8.0264 3.1133 -4.4556 13 6 7.5593 1.1040 -5.6210 14 6 7.0396 -0.1761 -5.6281 15 6 6.4622 -0.6953 -4.4817 16 9 5.9494 -1.9452 -4.4900 17 6 4.1059 -1.4255 0.0317 18 6 3.5708 -0.6939 1.2667 19 6 2.0407 -0.7227 1.2486 20 1 1.6972 -1.7571 1.2356 21 7 1.5258 -0.0524 2.4452 22 6 1.3943 -0.7487 3.6169 23 1 1.6706 -1.7919 3.6591 24 6 0.9059 -0.1137 4.7506 25 7 0.5697 1.1578 4.6993 26 14 0.7272 -1.0633 6.3493 27 1 1.1708 -2.4657 6.1441 28 1 1.5636 -0.4276 7.3988 29 1 -0.6953 -1.0519 6.7754 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7654 -0.1498 -2.1345 34 1 1.6032 -1.7151 -1.2972 35 1 6.0601 -1.5470 -1.9741 36 1 6.1325 0.0595 -1.2113 37 1 6.8946 1.9392 -2.4174 38 1 8.0058 1.5106 -6.5165 39 1 7.0801 -0.7704 -6.5290 40 1 3.8387 -2.4808 0.0877 41 1 5.1903 -1.3252 -0.0136 42 1 3.9333 -1.1883 2.1679 43 1 3.9158 0.3399 1.2551 44 1 1.2779 0.8846 2.4073 45 1 0.2288 1.6017 5.4916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036160608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:57 Heat of formation + Delta-G solvation = -94.046794 kcal Electronic energy + Delta-G solvation = -29267.746151 eV Core-core repulsion = 24921.096585 eV Total energy + Delta-G solvation = -4346.649565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.19477 -49.16133 -40.37103 -39.07078 -37.62408 -34.66158 -33.51686 -32.71213 -31.50747 -30.49759 -29.40380 -28.43880 -26.12412 -24.92988 -23.38913 -22.92452 -22.29198 -21.66728 -19.95256 -19.00740 -17.90794 -17.55684 -17.46860 -17.21130 -17.07128 -16.08533 -15.76464 -15.53416 -15.30427 -14.96685 -14.70546 -14.56292 -14.17530 -13.87166 -13.80946 -13.70242 -13.41473 -13.28898 -13.15766 -12.86000 -12.50082 -12.32045 -12.13898 -12.02412 -11.79043 -11.61168 -11.37068 -11.17815 -10.98211 -10.84842 -10.67615 -10.43789 -10.19479 -9.93440 -9.77493 -9.65644 -9.40586 -8.94752 -8.80738 -8.51887 -7.00448 -5.81340 -3.10144 0.62481 0.69139 2.60675 2.86845 3.19241 3.39308 3.45045 3.47380 3.81215 3.88880 4.11623 4.28141 4.51515 4.54445 4.60288 4.78256 4.96857 5.01378 5.12028 5.22121 5.25199 5.32049 5.36592 5.49410 5.55924 5.59774 5.65443 5.65741 5.72578 5.75997 5.79401 5.93683 6.05455 6.11365 6.25998 6.34593 6.40426 6.44538 6.49961 6.59190 6.77236 6.89134 7.01170 7.45103 7.65437 8.16391 8.36826 9.48403 10.05726 10.40479 11.41172 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002384 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.145549 B =11743.850945 C =12071.593524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.604 5.604 6 C 0.518 3.482 7 O -0.541 6.541 8 C -0.105 4.105 9 C -0.068 4.068 10 C -0.114 4.114 11 C 0.090 3.910 12 F -0.136 7.136 13 C -0.126 4.126 14 C -0.125 4.125 15 C 0.108 3.892 16 F -0.131 7.131 17 C 0.105 3.895 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 -3.568 -19.261 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.419 6.419 8 C -0.145 4.145 9 C -0.069 4.069 10 C -0.133 4.133 11 C 0.070 3.930 12 F -0.114 7.114 13 C -0.145 4.145 14 C -0.144 4.144 15 C 0.088 3.912 16 F -0.110 7.110 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.098 -3.445 -19.619 24.404 hybrid contribution -0.136 -0.141 1.127 1.143 sum 13.962 -3.587 -18.493 23.447 Atomic orbital electron populations 1.21655 0.94059 1.01781 1.01875 1.21666 0.96646 1.00068 0.94649 0.91304 1.21624 0.78298 1.00882 0.99373 1.48133 1.07247 1.60236 1.18081 1.20239 0.88486 0.77930 0.82801 1.90701 1.75300 1.44801 1.31085 1.20680 0.93082 1.04129 0.96576 1.19186 0.99379 0.93982 0.94391 1.20900 0.98872 0.94929 0.98572 1.17579 0.99436 0.80929 0.95032 1.91525 1.84683 1.38101 1.97106 1.20969 1.01720 0.94012 0.97827 1.20940 0.99610 0.96017 0.97808 1.17461 0.98240 0.80976 0.94503 1.91516 1.84674 1.37796 1.96985 1.21916 0.97540 0.97605 0.84777 1.22695 1.00487 1.00395 0.95796 1.20188 0.90306 0.95719 0.86427 0.93392 1.42418 1.76448 1.11421 1.05795 1.19253 1.35829 0.94114 0.87693 0.91180 1.24737 1.02061 0.96025 0.98081 1.69666 1.49999 1.09478 1.28838 0.86157 0.77341 0.78859 0.84053 1.20586 1.21931 1.21911 0.90724 0.93819 0.93040 0.89394 0.91581 0.87191 0.86911 0.83634 0.83755 0.83655 0.91259 0.90492 0.90468 0.92152 0.78216 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.03 37.16 0.34 -1.85 16 2 C -0.11 -1.78 2.44 -90.72 -0.22 -2.00 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.12 1.73 5.69 -3.93 -0.02 1.71 16 5 N -0.60 -8.10 2.98 -173.03 -0.52 -8.62 16 6 C 0.52 7.11 7.68 -10.99 -0.08 7.02 16 7 O -0.54 -9.27 15.36 5.55 0.09 -9.19 16 8 C -0.11 -1.05 3.90 -29.04 -0.11 -1.16 16 9 C -0.07 -0.72 4.43 -104.56 -0.46 -1.18 16 10 C -0.11 -1.13 9.65 -39.53 -0.38 -1.51 16 11 C 0.09 0.87 7.30 -39.43 -0.29 0.58 16 12 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 13 C -0.13 -1.03 10.02 -39.52 -0.40 -1.43 16 14 C -0.12 -1.07 10.02 -39.53 -0.40 -1.47 16 15 C 0.11 1.16 7.12 -39.43 -0.28 0.87 16 16 F -0.13 -1.54 16.66 2.25 0.04 -1.50 16 17 C 0.10 1.25 6.34 -3.72 -0.02 1.22 16 18 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 19 C 0.18 3.35 2.20 -67.89 -0.15 3.20 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -16.86 4.41 -53.38 -0.24 -17.09 16 22 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 26 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 0.91 7.74 -51.93 -0.40 0.51 16 36 H 0.11 0.89 7.56 -51.93 -0.39 0.50 16 37 H 0.15 1.23 8.04 -52.49 -0.42 0.81 16 38 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.38 9.76 7.50 -40.82 -0.31 9.45 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -31.52 375.98 -8.45 -39.97 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.35 Total: 7.37 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.88 Total: -5.35 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.03 Total: -52.31 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.52 -8.45 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.073 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds