Wall clock time and date at job start Tue Mar 31 2020 20:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.49832 * 2 1 4 4 C 1.52763 * 109.59380 * 240.04247 * 2 1 3 5 5 N 1.46925 * 109.00823 * 185.53625 * 4 2 1 6 6 C 1.34775 * 120.63182 * 233.58398 * 5 4 2 7 7 O 1.21283 * 119.99683 * 359.72583 * 6 5 4 8 8 C 1.50696 * 120.00195 * 179.72094 * 6 5 4 9 9 C 1.50701 * 109.47131 * 180.02562 * 8 6 5 10 10 C 1.38205 * 120.00210 * 100.00352 * 9 8 6 11 11 C 1.38423 * 120.00379 * 180.02562 * 10 9 8 12 12 F 1.35104 * 120.00297 * 180.02562 * 11 10 9 13 13 C 1.38475 * 119.99778 * 0.26844 * 11 10 9 14 14 C 1.38159 * 119.99902 * 359.45371 * 13 11 10 15 15 C 1.38431 * 120.00248 * 280.01808 * 9 8 6 16 16 F 1.35105 * 119.99644 * 359.96241 * 15 9 8 17 17 C 1.46922 * 118.73797 * 53.31096 * 5 4 2 18 18 C 1.53186 * 108.77735 * 306.64164 * 17 5 4 19 19 C 1.53039 * 109.49646 * 120.06390 * 2 1 3 20 20 H 1.08998 * 109.46400 * 61.33056 * 19 2 1 21 21 N 1.46501 * 109.45086 * 301.36190 * 19 2 1 22 22 C 1.36932 * 120.00257 * 154.93525 * 21 19 2 23 23 H 1.08002 * 120.00106 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00206 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99774 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00318 * 180.02562 * 24 22 21 27 27 H 1.48512 * 109.46730 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47191 * 119.99477 * 26 24 22 29 29 H 1.48497 * 109.47250 * 240.00323 * 26 24 22 30 30 H 1.08998 * 109.47395 * 299.93467 * 1 2 3 31 31 H 1.09003 * 109.47101 * 59.93831 * 1 2 3 32 32 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50681 * 65.65943 * 4 2 1 34 34 H 1.09001 * 109.43086 * 305.37485 * 4 2 1 35 35 H 1.09001 * 109.47074 * 60.00285 * 8 6 5 36 36 H 1.08996 * 109.47492 * 300.00245 * 8 6 5 37 37 H 1.08000 * 119.99784 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.99842 * 179.72729 * 13 11 10 39 39 H 1.08000 * 120.00020 * 180.29348 * 14 13 11 40 40 H 1.09007 * 109.58563 * 66.43317 * 17 5 4 41 41 H 1.09001 * 109.59048 * 186.70747 * 17 5 4 42 42 H 1.09001 * 109.49701 * 174.58470 * 18 17 5 43 43 H 1.08991 * 109.50029 * 294.65104 * 18 17 5 44 44 H 0.97001 * 119.99760 * 334.94683 * 21 19 2 45 45 H 0.96999 * 120.00043 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1688 6 6 4.2820 -0.3846 -2.1770 7 8 3.7740 0.1064 -3.1628 8 6 5.7814 -0.4985 -2.0793 9 6 6.4105 0.0663 -3.3268 10 6 6.9355 1.3447 -3.3182 11 6 7.5128 1.8637 -4.4642 12 9 8.0264 3.1133 -4.4556 13 6 7.5593 1.1040 -5.6210 14 6 7.0396 -0.1761 -5.6281 15 6 6.4622 -0.6953 -4.4817 16 9 5.9494 -1.9452 -4.4900 17 6 4.1059 -1.4255 0.0317 18 6 3.5708 -0.6939 1.2667 19 6 2.0407 -0.7227 1.2486 20 1 1.6972 -1.7571 1.2356 21 7 1.5258 -0.0524 2.4452 22 6 1.3943 -0.7487 3.6169 23 1 1.6706 -1.7919 3.6591 24 6 0.9059 -0.1137 4.7506 25 7 0.5697 1.1578 4.6993 26 14 0.7272 -1.0633 6.3493 27 1 1.1708 -2.4657 6.1441 28 1 1.5636 -0.4276 7.3988 29 1 -0.6953 -1.0519 6.7754 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7654 -0.1498 -2.1345 34 1 1.6032 -1.7151 -1.2972 35 1 6.0601 -1.5470 -1.9741 36 1 6.1325 0.0595 -1.2113 37 1 6.8946 1.9392 -2.4174 38 1 8.0058 1.5106 -6.5165 39 1 7.0801 -0.7704 -6.5290 40 1 3.8387 -2.4808 0.0877 41 1 5.1903 -1.3252 -0.0136 42 1 3.9333 -1.1883 2.1679 43 1 3.9158 0.3399 1.2551 44 1 1.2779 0.8846 2.4073 45 1 0.2288 1.6017 5.4916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036160608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:56 Heat of formation + Delta-G solvation = -111.381782 kcal Electronic energy + Delta-G solvation = -29268.497852 eV Core-core repulsion = 24921.096585 eV Total energy + Delta-G solvation = -4347.401267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.96167 -49.94598 -41.43005 -39.90595 -38.85565 -36.16637 -34.67498 -33.89832 -33.01161 -31.22749 -31.00743 -29.33365 -27.33319 -26.50188 -24.47746 -24.03017 -23.17433 -22.98610 -21.24902 -20.14785 -19.03041 -18.64785 -18.35880 -18.25216 -18.12315 -16.99509 -16.78918 -16.65871 -16.36532 -16.31326 -15.69303 -15.48786 -15.39327 -15.31683 -14.99906 -14.78010 -14.58896 -14.24636 -14.19819 -13.92208 -13.67442 -13.58249 -13.13696 -12.99723 -12.89640 -12.88103 -12.80190 -12.74069 -12.45727 -12.07824 -12.07349 -11.99028 -11.83619 -11.65625 -11.13975 -11.02551 -10.82435 -10.13524 -9.66463 -9.54837 -8.95247 -7.90406 -5.17693 -0.09939 0.00611 1.48994 1.49717 1.57544 1.58995 1.94714 2.38355 2.58684 3.10173 3.18655 3.39929 3.43600 3.54897 3.63539 3.80496 3.88760 3.99094 4.04142 4.09836 4.11655 4.31421 4.32332 4.41618 4.44598 4.51435 4.67060 4.71450 4.79791 4.82607 4.85266 4.93206 4.98455 5.00258 5.01361 5.02888 5.09508 5.19744 5.32932 5.41084 5.52149 5.57636 5.65303 5.76306 6.31209 6.40429 7.11554 7.37812 8.14311 8.37052 9.33443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002384 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.145549 B =11743.850945 C =12071.593524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.515 3.485 7 O -0.580 6.580 8 C -0.101 4.101 9 C -0.081 4.081 10 C -0.122 4.122 11 C 0.075 3.925 12 F -0.142 7.142 13 C -0.120 4.120 14 C -0.122 4.122 15 C 0.087 3.913 16 F -0.141 7.141 17 C 0.112 3.888 18 C -0.144 4.144 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.732 5.732 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.185 -5.294 -20.513 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.304 3.696 7 O -0.460 6.460 8 C -0.140 4.140 9 C -0.083 4.083 10 C -0.141 4.141 11 C 0.056 3.944 12 F -0.121 7.121 13 C -0.138 4.138 14 C -0.141 4.141 15 C 0.068 3.932 16 F -0.119 7.119 17 C -0.010 4.010 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.065 0.935 21 N -0.371 5.371 22 C -0.358 4.358 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.227 1.227 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.201 0.799 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.916 -5.225 -20.897 26.783 hybrid contribution -0.677 0.402 1.396 1.603 sum 15.238 -4.823 -19.501 25.215 Atomic orbital electron populations 1.21577 0.94165 1.01973 1.01111 1.21524 0.96545 0.99131 0.94767 0.92978 1.21459 0.79403 1.01133 0.97566 1.48210 1.06794 1.60190 1.18606 1.20885 0.89977 0.76719 0.82003 1.90683 1.76306 1.46403 1.32602 1.20749 0.89987 1.05911 0.97363 1.19291 0.99943 0.94280 0.94776 1.21058 0.98908 0.94930 0.99185 1.17818 0.99880 0.80945 0.95749 1.91509 1.84835 1.38549 1.97173 1.21279 1.00743 0.93576 0.98216 1.21244 0.98548 0.96248 0.98058 1.17784 0.99061 0.80896 0.95454 1.91487 1.84977 1.38381 1.97081 1.21979 0.99441 0.97580 0.82049 1.22479 0.98027 1.00286 0.97652 1.20437 0.92059 0.95214 0.85284 0.93452 1.42611 1.76885 1.10845 1.06772 1.19629 1.33353 0.94407 0.88415 0.90342 1.25485 1.03335 0.96914 1.01304 1.69824 1.52206 1.11126 1.29169 0.85163 0.76507 0.78421 0.80243 1.18757 1.22514 1.22691 0.94077 0.91929 0.92323 0.90179 0.90137 0.85016 0.84614 0.82784 0.81110 0.81251 0.89542 0.86826 0.91223 0.93354 0.79853 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.03 71.98 0.65 -3.55 16 2 C -0.10 -3.18 2.44 -10.86 -0.03 -3.21 16 3 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.13 3.47 5.69 86.22 0.49 3.96 16 5 N -0.61 -14.90 2.98 -819.75 -2.44 -17.34 16 6 C 0.51 13.13 7.68 87.66 0.67 13.80 16 7 O -0.58 -19.34 15.36 -3.04 -0.05 -19.38 16 8 C -0.10 -1.74 3.90 29.10 0.11 -1.63 16 9 C -0.08 -1.58 4.43 -19.83 -0.09 -1.67 16 10 C -0.12 -2.25 9.65 22.31 0.22 -2.03 16 11 C 0.08 1.36 7.30 22.37 0.16 1.52 16 12 F -0.14 -2.77 17.27 44.97 0.78 -2.00 16 13 C -0.12 -1.68 10.02 22.31 0.22 -1.46 16 14 C -0.12 -1.82 10.02 22.31 0.22 -1.60 16 15 C 0.09 1.72 7.12 22.37 0.16 1.88 16 16 F -0.14 -3.07 16.66 44.97 0.75 -2.32 16 17 C 0.11 2.30 6.34 86.36 0.55 2.85 16 18 C -0.14 -4.25 5.66 30.67 0.17 -4.08 16 19 C 0.18 6.38 2.20 45.02 0.10 6.47 16 20 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 21 N -0.73 -34.69 4.41 -322.81 -1.42 -36.11 16 22 C -0.23 -11.85 9.93 84.04 0.83 -11.01 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 25 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 26 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 27 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 30 H 0.04 1.59 7.36 -2.39 -0.02 1.58 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.36 7.01 -2.39 -0.02 2.34 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.13 1.69 7.74 -2.39 -0.02 1.68 16 36 H 0.14 1.69 7.56 -2.39 -0.02 1.67 16 37 H 0.15 2.41 8.04 -2.91 -0.02 2.39 16 38 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.11 1.57 5.93 -2.39 -0.01 1.55 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.37 19.46 7.50 -92.71 -0.70 18.76 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -69.79 375.98 5.17 -64.63 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.32 Total: 27.43 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.92 Total: -3.66 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.58 Total: -111.75 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 1.53 Total: -4.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.79 5.17 -64.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036160608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.757 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds