Wall clock time and date at job start Tue Mar 31 2020 20:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47185 * 179.97438 * 8 6 5 10 10 C 1.38257 * 119.99993 * 264.71852 * 9 8 6 11 11 C 1.38216 * 120.07115 * 179.72015 * 10 9 8 12 12 C 1.38256 * 120.06901 * 0.56070 * 11 10 9 13 13 C 1.38376 * 119.99908 * 359.72081 * 12 11 10 14 14 F 1.35101 * 120.03532 * 180.02562 * 13 12 11 15 15 C 1.38370 * 120.00189 * 84.99736 * 9 8 6 16 16 F 1.35098 * 120.03455 * 0.02562 * 15 9 8 17 17 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 18 18 C 1.53195 * 108.89273 * 53.53793 * 17 5 4 19 19 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 20 20 H 1.09007 * 109.45640 * 298.70737 * 19 2 1 21 21 N 1.46499 * 109.46160 * 58.66119 * 19 2 1 22 22 C 1.36928 * 120.00250 * 205.00378 * 21 19 2 23 23 H 1.08000 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00515 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99431 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00596 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47200 * 59.99138 * 26 24 22 28 28 H 1.48495 * 109.47377 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46835 * 299.99442 * 26 24 22 30 30 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 31 31 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 32 32 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 33 33 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 34 34 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 35 35 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 36 36 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 37 37 H 1.08004 * 119.96272 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.96791 * 180.26139 * 11 10 9 39 39 H 1.07999 * 120.00090 * 179.74327 * 12 11 10 40 40 H 1.09002 * 109.58751 * 173.39743 * 17 5 4 41 41 H 1.08996 * 109.58750 * 293.67928 * 17 5 4 42 42 H 1.08997 * 109.50046 * 65.38734 * 18 17 5 43 43 H 1.09003 * 109.49733 * 185.48713 * 18 17 5 44 44 H 0.97007 * 119.99658 * 24.99911 * 21 19 2 45 45 H 0.97006 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4094 0.0645 3.3285 10 6 6.8469 1.3759 3.3495 11 6 7.4186 1.8970 4.4949 12 6 7.5648 1.1046 5.6184 13 6 7.1332 -0.2100 5.5987 14 9 7.2751 -0.9849 6.6963 15 6 6.5542 -0.7311 4.4513 16 9 6.1325 -2.0144 4.4296 17 6 4.1053 -1.4267 -0.0306 18 6 3.5713 -0.6980 -1.2679 19 6 2.0409 -0.7231 -1.2483 20 1 1.6967 -1.7573 -1.2352 21 7 1.5266 -0.0530 -2.4453 22 6 1.3965 -0.7493 -3.6171 23 1 1.6734 -1.7923 -3.6592 24 6 0.9097 -0.1143 -4.7515 25 7 0.5727 1.1571 -4.7004 26 14 0.7328 -1.0639 -6.3503 27 1 -0.1985 -2.2029 -6.1491 28 1 0.1950 -0.1652 -7.4030 29 1 2.0611 -1.5788 -6.7697 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 6.0588 -1.5488 1.9759 36 1 6.1321 0.0577 1.2128 37 1 6.7374 1.9952 2.4715 38 1 7.7560 2.9228 4.5109 39 1 8.0154 1.5116 6.5115 40 1 5.1896 -1.3246 0.0139 41 1 3.8397 -2.4824 -0.0852 42 1 3.9164 0.3358 -1.2585 43 1 3.9340 -1.1951 -2.1676 44 1 1.2782 0.8839 -2.4076 45 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036193161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:25 Heat of formation + Delta-G solvation = -92.869200 kcal Electronic energy + Delta-G solvation = -29318.966325 eV Core-core repulsion = 24972.367824 eV Total energy + Delta-G solvation = -4346.598501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.67612 -48.75642 -40.38213 -39.12725 -37.61748 -34.66091 -33.42793 -32.64374 -31.49986 -30.59399 -29.41174 -28.47396 -26.11888 -24.92624 -23.12979 -23.00852 -22.42772 -21.67605 -19.94820 -19.00063 -18.10060 -17.57747 -17.35154 -17.10947 -17.03130 -16.42032 -15.77998 -15.31291 -15.14664 -15.12449 -14.95744 -14.62147 -14.16991 -13.92341 -13.79545 -13.69499 -13.41814 -13.29800 -13.05755 -12.55980 -12.43190 -12.32889 -12.23390 -11.97763 -11.80552 -11.61291 -11.51125 -11.18518 -10.96063 -10.84330 -10.66775 -10.43958 -10.26152 -9.90536 -9.77045 -9.65672 -9.18240 -9.00330 -8.93565 -8.51757 -7.00653 -5.81219 -3.10065 0.64339 0.66326 2.60543 2.88160 3.21020 3.39871 3.44921 3.45792 3.50070 4.03783 4.14505 4.36631 4.51252 4.54484 4.59783 4.74982 4.95430 5.01980 5.11988 5.22230 5.24417 5.32132 5.41015 5.48705 5.50795 5.58185 5.64454 5.65481 5.75844 5.77783 5.92537 5.93891 6.05253 6.11572 6.25785 6.34754 6.40339 6.43707 6.49675 6.58947 6.77189 6.88825 7.00986 7.45046 7.64434 8.16351 8.37041 9.48416 10.05671 10.40502 11.41144 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002300 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.913938 B =12172.382068 C =12304.595869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.518 3.482 7 O -0.542 6.542 8 C -0.105 4.105 9 C -0.068 4.068 10 C -0.088 4.088 11 C -0.099 4.099 12 C -0.129 4.129 13 C 0.066 3.934 14 F -0.131 7.131 15 C 0.082 3.918 16 F -0.126 7.126 17 C 0.105 3.895 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.722 -1.087 17.946 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.419 6.419 8 C -0.145 4.145 9 C -0.070 4.070 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.147 4.147 13 C 0.046 3.954 14 F -0.109 7.109 15 C 0.062 3.938 16 F -0.105 7.105 17 C -0.019 4.019 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.397 -1.035 18.341 23.340 hybrid contribution -0.190 -0.622 -0.883 1.096 sum 14.207 -1.657 17.458 22.569 Atomic orbital electron populations 1.21659 0.94094 1.01798 1.01849 1.21735 0.96611 0.99999 0.94568 0.91265 1.21722 0.78278 1.00868 0.99368 1.48138 1.07249 1.60258 1.18063 1.20250 0.88489 0.77964 0.82765 1.90703 1.75303 1.44838 1.31063 1.20682 0.93076 1.04193 0.96547 1.19299 0.99561 0.94362 0.93764 1.21039 0.96916 0.93366 0.99307 1.21049 0.98538 1.00260 0.91839 1.21084 1.01589 0.91354 1.00714 1.17635 1.04136 0.90583 0.83076 1.91525 1.93896 1.74482 1.51005 1.17464 1.01570 0.80477 0.94315 1.91518 1.87826 1.34336 1.96779 1.21911 0.97542 0.97602 0.84797 1.22699 1.00485 1.00396 0.95740 1.20193 0.90326 0.95721 0.86432 0.93450 1.42398 1.76491 1.11423 1.05736 1.19162 1.36087 0.94082 0.87694 0.91295 1.24732 1.02030 0.96021 0.98058 1.69653 1.49876 1.09485 1.29025 0.86297 0.77740 0.78726 0.83579 1.21302 1.21747 1.21320 0.93820 0.90733 0.93043 0.91568 0.89377 0.87367 0.86713 0.84151 0.84085 0.83769 0.90496 0.91288 0.92153 0.90457 0.78217 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.02 37.16 0.34 -1.85 16 2 C -0.11 -1.75 2.46 -90.50 -0.22 -1.97 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.72 5.72 -3.71 -0.02 1.70 16 5 N -0.60 -8.12 2.97 -172.77 -0.51 -8.63 16 6 C 0.52 7.12 7.69 -10.98 -0.08 7.04 16 7 O -0.54 -9.32 15.45 5.55 0.09 -9.23 16 8 C -0.11 -1.05 3.95 -29.04 -0.11 -1.17 16 9 C -0.07 -0.73 4.38 -104.57 -0.46 -1.19 16 10 C -0.09 -0.75 9.68 -39.58 -0.38 -1.14 16 11 C -0.10 -0.72 10.04 -39.58 -0.40 -1.11 16 12 C -0.13 -1.05 10.02 -39.52 -0.40 -1.45 16 13 C 0.07 0.72 7.31 -39.37 -0.29 0.44 16 14 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 15 C 0.08 0.99 7.25 -39.37 -0.29 0.70 16 16 F -0.13 -1.69 16.48 2.25 0.04 -1.65 16 17 C 0.10 1.25 6.34 -3.71 -0.02 1.22 16 18 C -0.15 -2.36 5.67 -26.59 -0.15 -2.51 16 19 C 0.18 3.33 2.19 -67.87 -0.15 3.18 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.78 4.41 -53.37 -0.24 -17.02 16 22 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 26 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.11 0.94 7.59 -51.93 -0.39 0.55 16 36 H 0.11 0.87 7.60 -51.93 -0.39 0.48 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.38 9.70 7.50 -40.82 -0.31 9.40 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -31.90 375.96 -8.45 -40.35 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.34 Total: 6.81 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.88 Total: -4.93 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.02 Total: -52.15 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.90 -8.45 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.518 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds