Wall clock time and date at job start Tue Mar 31 2020 20:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 C 1.50693 * 109.47185 * 179.97438 * 8 6 5 10 10 C 1.38257 * 119.99993 * 264.71852 * 9 8 6 11 11 C 1.38216 * 120.07115 * 179.72015 * 10 9 8 12 12 C 1.38256 * 120.06901 * 0.56070 * 11 10 9 13 13 C 1.38376 * 119.99908 * 359.72081 * 12 11 10 14 14 F 1.35101 * 120.03532 * 180.02562 * 13 12 11 15 15 C 1.38370 * 120.00189 * 84.99736 * 9 8 6 16 16 F 1.35098 * 120.03455 * 0.02562 * 15 9 8 17 17 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 18 18 C 1.53195 * 108.89273 * 53.53793 * 17 5 4 19 19 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 20 20 H 1.09007 * 109.45640 * 298.70737 * 19 2 1 21 21 N 1.46499 * 109.46160 * 58.66119 * 19 2 1 22 22 C 1.36928 * 120.00250 * 205.00378 * 21 19 2 23 23 H 1.08000 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00515 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99431 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00596 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47200 * 59.99138 * 26 24 22 28 28 H 1.48495 * 109.47377 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46835 * 299.99442 * 26 24 22 30 30 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 31 31 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 32 32 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 33 33 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 34 34 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 35 35 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 36 36 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 37 37 H 1.08004 * 119.96272 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.96791 * 180.26139 * 11 10 9 39 39 H 1.07999 * 120.00090 * 179.74327 * 12 11 10 40 40 H 1.09002 * 109.58751 * 173.39743 * 17 5 4 41 41 H 1.08996 * 109.58750 * 293.67928 * 17 5 4 42 42 H 1.08997 * 109.50046 * 65.38734 * 18 17 5 43 43 H 1.09003 * 109.49733 * 185.48713 * 18 17 5 44 44 H 0.97007 * 119.99658 * 24.99911 * 21 19 2 45 45 H 0.97006 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 6 6.4094 0.0645 3.3285 10 6 6.8469 1.3759 3.3495 11 6 7.4186 1.8970 4.4949 12 6 7.5648 1.1046 5.6184 13 6 7.1332 -0.2100 5.5987 14 9 7.2751 -0.9849 6.6963 15 6 6.5542 -0.7311 4.4513 16 9 6.1325 -2.0144 4.4296 17 6 4.1053 -1.4267 -0.0306 18 6 3.5713 -0.6980 -1.2679 19 6 2.0409 -0.7231 -1.2483 20 1 1.6967 -1.7573 -1.2352 21 7 1.5266 -0.0530 -2.4453 22 6 1.3965 -0.7493 -3.6171 23 1 1.6734 -1.7923 -3.6592 24 6 0.9097 -0.1143 -4.7515 25 7 0.5727 1.1571 -4.7004 26 14 0.7328 -1.0639 -6.3503 27 1 -0.1985 -2.2029 -6.1491 28 1 0.1950 -0.1652 -7.4030 29 1 2.0611 -1.5788 -6.7697 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 6.0588 -1.5488 1.9759 36 1 6.1321 0.0577 1.2128 37 1 6.7374 1.9952 2.4715 38 1 7.7560 2.9228 4.5109 39 1 8.0154 1.5116 6.5115 40 1 5.1896 -1.3246 0.0139 41 1 3.8397 -2.4824 -0.0852 42 1 3.9164 0.3358 -1.2585 43 1 3.9340 -1.1951 -2.1676 44 1 1.2782 0.8839 -2.4076 45 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036193161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:24 Heat of formation + Delta-G solvation = -110.818051 kcal Electronic energy + Delta-G solvation = -29319.744645 eV Core-core repulsion = 24972.367824 eV Total energy + Delta-G solvation = -4347.376822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.52569 -49.61797 -41.43134 -39.94340 -38.85236 -36.16154 -34.64050 -33.78433 -32.98582 -31.27924 -31.02345 -29.36773 -27.32602 -26.49114 -24.45706 -23.83425 -23.30210 -23.02242 -21.24293 -20.14145 -19.02150 -18.90407 -18.33729 -18.30743 -17.87350 -17.31492 -16.83246 -16.73206 -16.34826 -16.02408 -15.75697 -15.68278 -15.47019 -15.46057 -15.00617 -14.78123 -14.66868 -14.28259 -14.16211 -13.88606 -13.59865 -13.17566 -13.14181 -13.02167 -12.92151 -12.81236 -12.74731 -12.69594 -12.45726 -12.20134 -12.18406 -12.00897 -11.83335 -11.64553 -11.13725 -11.01014 -10.79921 -9.90227 -9.73982 -9.66517 -8.94246 -7.89445 -5.16635 -0.05201 -0.03741 1.49957 1.51694 1.57201 1.57836 1.95653 2.43864 2.59485 2.79205 3.26321 3.43341 3.45021 3.56645 3.74220 3.81268 3.87497 3.94677 4.04879 4.11523 4.17725 4.29683 4.32564 4.41693 4.46524 4.52467 4.67751 4.76419 4.79964 4.82558 4.86048 4.87854 4.99225 5.00613 5.03327 5.16390 5.19950 5.28938 5.33246 5.41561 5.52423 5.57733 5.65764 5.77537 6.31977 6.40324 7.11440 7.38788 8.15385 8.38284 9.33890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002300 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.913938 B =12172.382068 C =12304.595869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.056 0.944 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.515 3.485 7 O -0.581 6.581 8 C -0.101 4.101 9 C -0.083 4.083 10 C -0.090 4.090 11 C -0.089 4.089 12 C -0.123 4.123 13 C 0.041 3.959 14 F -0.143 7.143 15 C 0.051 3.949 16 F -0.143 7.143 17 C 0.112 3.888 18 C -0.142 4.142 19 C 0.178 3.822 20 H 0.044 0.956 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.077 0.923 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.301 1.301 29 H -0.277 1.277 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.723 -1.299 18.428 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.074 0.926 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.304 3.696 7 O -0.461 6.461 8 C -0.140 4.140 9 C -0.084 4.084 10 C -0.108 4.108 11 C -0.107 4.107 12 C -0.142 4.142 13 C 0.021 3.979 14 F -0.122 7.122 15 C 0.031 3.969 16 F -0.122 7.122 17 C -0.011 4.011 18 C -0.183 4.183 19 C 0.070 3.930 20 H 0.062 0.938 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.095 0.905 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.207 1.207 28 H -0.228 1.228 29 H -0.203 1.203 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.195 0.805 39 H 0.188 0.812 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.436 -1.301 18.848 25.042 hybrid contribution -0.799 -0.521 -0.929 1.331 sum 15.638 -1.821 17.918 23.852 Atomic orbital electron populations 1.21583 0.94266 1.01877 1.01155 1.21587 0.96445 0.99203 0.94545 0.92598 1.21554 0.79404 1.01003 0.97686 1.48214 1.06782 1.60205 1.18605 1.20907 0.90008 0.76745 0.81918 1.90685 1.76326 1.46520 1.32554 1.20753 0.89948 1.05718 0.97579 1.19483 1.00207 0.95175 0.93532 1.21438 0.96025 0.92692 1.00651 1.21514 0.96837 1.01609 0.90721 1.21467 1.00465 0.90100 1.02120 1.18020 1.05473 0.91738 0.82711 1.91483 1.94140 1.75047 1.51549 1.17848 1.03139 0.80303 0.95569 1.91459 1.88287 1.35510 1.96947 1.21970 0.99478 0.97464 0.82173 1.22475 0.97934 1.00439 0.97452 1.20437 0.92148 0.95113 0.85342 0.93771 1.42577 1.76946 1.10860 1.06656 1.19544 1.33727 0.94390 0.88464 0.90509 1.25471 1.03259 0.96905 1.01241 1.69814 1.52034 1.11076 1.29279 0.85308 0.77910 0.77317 0.79814 1.20737 1.22782 1.20316 0.91892 0.93986 0.92533 0.90419 0.90127 0.85926 0.83715 0.81930 0.80474 0.81229 0.86760 0.89902 0.93003 0.91262 0.79775 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.02 71.98 0.65 -3.55 16 2 C -0.10 -3.09 2.46 -10.71 -0.03 -3.12 16 3 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.13 3.47 5.72 86.36 0.49 3.96 16 5 N -0.61 -14.98 2.97 -818.91 -2.44 -17.41 16 6 C 0.51 13.18 7.69 87.65 0.67 13.85 16 7 O -0.58 -19.50 15.45 -3.04 -0.05 -19.55 16 8 C -0.10 -1.74 3.95 29.10 0.11 -1.62 16 9 C -0.08 -1.60 4.38 -19.83 -0.09 -1.68 16 10 C -0.09 -1.27 9.68 22.27 0.22 -1.05 16 11 C -0.09 -0.98 10.04 22.27 0.22 -0.76 16 12 C -0.12 -1.73 10.02 22.31 0.22 -1.51 16 13 C 0.04 0.87 7.31 22.41 0.16 1.03 16 14 F -0.14 -3.45 17.18 44.97 0.77 -2.67 16 15 C 0.05 1.21 7.25 22.41 0.16 1.38 16 16 F -0.14 -3.88 16.48 44.97 0.74 -3.14 16 17 C 0.11 2.31 6.34 86.36 0.55 2.86 16 18 C -0.14 -4.16 5.67 30.68 0.17 -3.99 16 19 C 0.18 6.33 2.19 45.03 0.10 6.43 16 20 H 0.04 1.61 8.08 -2.38 -0.02 1.59 16 21 N -0.73 -34.40 4.41 -322.77 -1.42 -35.82 16 22 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 25 N -0.97 -58.05 13.06 21.65 0.28 -57.77 16 26 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.62 7.36 -2.38 -0.02 1.60 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.38 7.00 -2.39 -0.02 2.36 16 35 H 0.12 1.76 7.59 -2.38 -0.02 1.75 16 36 H 0.15 1.58 7.60 -2.38 -0.02 1.56 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.11 1.58 5.93 -2.39 -0.01 1.56 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.37 19.27 7.50 -92.70 -0.70 18.58 16 45 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -71.85 375.96 5.17 -66.68 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.32 Total: 25.55 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 4.93 Total: -2.70 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -3.58 Total: -111.01 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.51 Total: -5.81 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.85 5.17 -66.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.136 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds