Wall clock time and date at job start Tue Mar 31 2020 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50022 * 2 1 4 4 C 1.52758 * 109.58862 * 240.04883 * 2 1 3 5 5 N 1.46927 * 109.00682 * 185.53961 * 4 2 1 6 6 C 1.34784 * 120.62995 * 233.58186 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72079 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71961 * 6 5 4 9 9 C 1.50698 * 109.47166 * 179.97438 * 8 6 5 10 10 C 1.38261 * 119.99984 * 99.99644 * 9 8 6 11 11 C 1.38213 * 120.06932 * 180.02562 * 10 9 8 12 12 C 1.38250 * 120.07584 * 0.02562 * 11 10 9 13 13 C 1.38372 * 119.99702 * 359.97438 * 12 11 10 14 14 F 1.35099 * 120.03396 * 179.97438 * 13 12 11 15 15 C 1.38363 * 120.00217 * 279.72746 * 9 8 6 16 16 F 1.35098 * 120.03802 * 0.02562 * 15 9 8 17 17 C 1.46923 * 118.73985 * 53.30967 * 5 4 2 18 18 C 1.53194 * 108.77322 * 306.63925 * 17 5 4 19 19 C 1.53039 * 109.49681 * 120.06753 * 2 1 3 20 20 H 1.08997 * 109.45929 * 301.36406 * 19 2 1 21 21 N 1.46494 * 109.46028 * 61.32486 * 19 2 1 22 22 C 1.36935 * 120.00034 * 205.06717 * 21 19 2 23 23 H 1.08000 * 120.00354 * 0.02562 * 22 21 19 24 24 C 1.38819 * 119.99981 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99952 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99668 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47118 * 60.00574 * 26 24 22 28 28 H 1.48508 * 109.46659 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47321 * 299.99900 * 26 24 22 30 30 H 1.09000 * 109.47013 * 299.93505 * 1 2 3 31 31 H 1.09004 * 109.46826 * 59.93342 * 1 2 3 32 32 H 1.08994 * 109.47695 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.51509 * 65.65348 * 4 2 1 34 34 H 1.09007 * 109.43462 * 305.37306 * 4 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 36 36 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 37 37 H 1.08004 * 119.96361 * 359.97438 * 10 9 8 38 38 H 1.08005 * 119.96053 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00370 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.59009 * 66.42846 * 17 5 4 41 41 H 1.09003 * 109.58381 * 186.71554 * 17 5 4 42 42 H 1.08996 * 109.49478 * 174.58662 * 18 17 5 43 43 H 1.08997 * 109.50060 * 294.68386 * 18 17 5 44 44 H 0.96999 * 120.00224 * 25.06844 * 21 19 2 45 45 H 0.96997 * 119.99663 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8284 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4985 -2.0795 9 6 6.4103 0.0652 -3.3276 10 6 6.9356 1.3441 -3.3200 11 6 7.5123 1.8627 -4.4640 12 6 7.5648 1.1040 -5.6185 13 6 7.0400 -0.1763 -5.6294 14 9 7.0904 -0.9182 -6.7573 15 6 6.4672 -0.6992 -4.4795 16 9 5.9587 -1.9508 -4.4864 17 6 4.1058 -1.4256 0.0315 18 6 3.5708 -0.6940 1.2666 19 6 2.0408 -0.7228 1.2485 20 1 1.6577 -0.2243 2.1389 21 7 1.5789 -2.1129 1.2309 22 6 1.4474 -2.8056 2.4048 23 1 1.6838 -2.3270 3.3437 24 6 1.0102 -4.1230 2.3881 25 7 0.7226 -4.7065 1.2439 26 14 0.8315 -5.0681 3.9895 27 1 -0.1476 -4.3763 4.8660 28 1 0.3517 -6.4437 3.7015 29 1 2.1475 -5.1355 4.6740 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7652 -0.1497 -2.1346 34 1 1.6031 -1.7150 -1.2974 35 1 6.1324 0.0595 -1.2115 36 1 6.0600 -1.5471 -1.9745 37 1 6.8944 1.9388 -2.4194 38 1 7.9217 2.8621 -4.4562 39 1 8.0153 1.5105 -6.5119 40 1 3.8385 -2.4808 0.0875 41 1 5.1903 -1.3253 -0.0140 42 1 3.9333 -1.1885 2.1677 43 1 3.9155 0.3400 1.2547 44 1 1.3662 -2.5427 0.3878 45 1 0.4175 -5.6272 1.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036193162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:29 Heat of formation + Delta-G solvation = -90.061979 kcal Electronic energy + Delta-G solvation = -29813.076323 eV Core-core repulsion = 25466.599553 eV Total energy + Delta-G solvation = -4346.476771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.56611 -48.64248 -40.27190 -39.08567 -37.62961 -34.30894 -33.30920 -32.62840 -31.42112 -30.52217 -29.21072 -28.43175 -26.02095 -24.82945 -23.50277 -23.04825 -22.47450 -21.67172 -19.66554 -18.26156 -17.98483 -17.47285 -17.43080 -17.10507 -16.89702 -16.29479 -15.62076 -15.26773 -15.06618 -15.01559 -14.63871 -14.49824 -14.31218 -13.99634 -13.79700 -13.55177 -13.38326 -13.14889 -12.96901 -12.54849 -12.39463 -12.27606 -12.19341 -11.90726 -11.62911 -11.46886 -11.31154 -11.20007 -10.91709 -10.81852 -10.51217 -10.49121 -10.24154 -9.86451 -9.72127 -9.57469 -9.09619 -8.94827 -8.91873 -8.25187 -7.00674 -5.81176 -3.10032 0.71655 0.74035 2.77360 3.00210 3.35699 3.40020 3.45260 3.46363 3.59371 4.14782 4.22340 4.42680 4.55142 4.67549 4.68242 4.80602 5.06857 5.16752 5.21725 5.30047 5.34535 5.46383 5.52007 5.56236 5.58463 5.70304 5.71610 5.78618 5.83600 5.91248 5.98510 6.04808 6.07332 6.23254 6.28497 6.37963 6.47650 6.51833 6.60762 6.65670 6.73720 6.90392 6.98082 7.65453 7.67482 8.33999 8.37208 9.48704 10.05352 10.40240 11.41069 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.002723 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.909529 B =10280.268826 C =10759.345715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.546 6.546 8 C -0.105 4.105 9 C -0.068 4.068 10 C -0.091 4.091 11 C -0.101 4.101 12 C -0.130 4.130 13 C 0.066 3.934 14 F -0.130 7.130 15 C 0.086 3.914 16 F -0.123 7.123 17 C 0.111 3.889 18 C -0.150 4.150 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.392 13.963 -8.718 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.303 3.697 7 O -0.425 6.425 8 C -0.144 4.144 9 C -0.069 4.069 10 C -0.109 4.109 11 C -0.119 4.119 12 C -0.148 4.148 13 C 0.046 3.954 14 F -0.109 7.109 15 C 0.066 3.934 16 F -0.102 7.102 17 C -0.011 4.011 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.063 14.036 -9.107 21.857 hybrid contribution -0.243 -1.241 0.532 1.372 sum 13.820 12.794 -8.575 20.694 Atomic orbital electron populations 1.21665 0.94201 1.03216 1.00430 1.21623 0.96540 0.98823 0.95808 0.91705 1.21561 0.78486 1.01641 0.98589 1.48091 1.07180 1.59616 1.18174 1.20207 0.88424 0.78149 0.82897 1.90689 1.75314 1.45427 1.31038 1.20676 0.93288 1.04232 0.96233 1.19333 0.99341 0.94677 0.93571 1.21002 0.97037 0.93489 0.99377 1.21012 0.99063 1.00144 0.91709 1.21060 1.01257 0.92031 1.00495 1.17654 1.04061 0.91574 0.82146 1.91525 1.94645 1.76212 1.48497 1.17495 1.00109 0.81847 0.93973 1.91544 1.84710 1.37049 1.96864 1.21778 0.96292 0.99284 0.83762 1.22528 1.00593 0.98557 0.97418 1.20206 0.90752 0.87388 0.94832 0.93133 1.42475 1.79022 1.07678 1.06942 1.19162 1.37496 0.93860 0.86526 0.91312 1.24714 1.02216 0.97200 0.96589 1.69638 1.51558 1.13096 1.23708 0.86313 0.77746 0.79237 0.83116 1.21369 1.21803 1.21354 0.92798 0.93774 0.91026 0.89834 0.90660 0.86979 0.87294 0.84286 0.84209 0.83840 0.89528 0.91218 0.90671 0.93297 0.78073 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.06 37.16 0.34 -1.85 16 2 C -0.11 -1.73 2.65 -90.72 -0.24 -1.97 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.12 2.01 5.40 -3.93 -0.02 1.99 16 5 N -0.60 -9.39 2.98 -173.03 -0.52 -9.90 16 6 C 0.52 7.98 7.69 -10.98 -0.08 7.89 16 7 O -0.55 -10.22 15.37 5.56 0.09 -10.13 16 8 C -0.10 -1.19 3.90 -29.04 -0.11 -1.31 16 9 C -0.07 -0.79 4.42 -104.57 -0.46 -1.25 16 10 C -0.09 -0.81 9.67 -39.58 -0.38 -1.19 16 11 C -0.10 -0.77 10.04 -39.59 -0.40 -1.17 16 12 C -0.13 -1.15 10.02 -39.53 -0.40 -1.54 16 13 C 0.07 0.80 7.31 -39.36 -0.29 0.51 16 14 F -0.13 -1.70 17.18 2.25 0.04 -1.66 16 15 C 0.09 1.16 7.14 -39.36 -0.28 0.88 16 16 F -0.12 -1.92 16.57 2.25 0.04 -1.88 16 17 C 0.11 1.66 6.09 -3.71 -0.02 1.63 16 18 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 19 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -16.19 3.64 -53.39 -0.19 -16.38 16 22 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 26 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 33 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 34 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 35 H 0.11 0.94 7.56 -51.93 -0.39 0.54 16 36 H 0.11 1.18 7.73 -51.93 -0.40 0.78 16 37 H 0.14 0.89 8.04 -52.48 -0.42 0.47 16 38 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 41 H 0.07 0.80 5.93 -51.93 -0.31 0.50 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.38 9.36 5.94 -40.82 -0.24 9.12 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -31.29 371.97 -8.36 -39.65 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.19 Total: 7.85 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.92 Total: -3.48 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.01 Total: -52.48 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.29 -8.36 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.412 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds