Wall clock time and date at job start Tue Mar 31 2020 20:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50022 * 2 1 4 4 C 1.52758 * 109.58862 * 240.04883 * 2 1 3 5 5 N 1.46927 * 109.00682 * 185.53961 * 4 2 1 6 6 C 1.34784 * 120.62995 * 233.58186 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.72079 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.71961 * 6 5 4 9 9 C 1.50698 * 109.47166 * 179.97438 * 8 6 5 10 10 C 1.38261 * 119.99984 * 99.99644 * 9 8 6 11 11 C 1.38213 * 120.06932 * 180.02562 * 10 9 8 12 12 C 1.38250 * 120.07584 * 0.02562 * 11 10 9 13 13 C 1.38372 * 119.99702 * 359.97438 * 12 11 10 14 14 F 1.35099 * 120.03396 * 179.97438 * 13 12 11 15 15 C 1.38363 * 120.00217 * 279.72746 * 9 8 6 16 16 F 1.35098 * 120.03802 * 0.02562 * 15 9 8 17 17 C 1.46923 * 118.73985 * 53.30967 * 5 4 2 18 18 C 1.53194 * 108.77322 * 306.63925 * 17 5 4 19 19 C 1.53039 * 109.49681 * 120.06753 * 2 1 3 20 20 H 1.08997 * 109.45929 * 301.36406 * 19 2 1 21 21 N 1.46494 * 109.46028 * 61.32486 * 19 2 1 22 22 C 1.36935 * 120.00034 * 205.06717 * 21 19 2 23 23 H 1.08000 * 120.00354 * 0.02562 * 22 21 19 24 24 C 1.38819 * 119.99981 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99952 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99668 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47118 * 60.00574 * 26 24 22 28 28 H 1.48508 * 109.46659 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47321 * 299.99900 * 26 24 22 30 30 H 1.09000 * 109.47013 * 299.93505 * 1 2 3 31 31 H 1.09004 * 109.46826 * 59.93342 * 1 2 3 32 32 H 1.08994 * 109.47695 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.51509 * 65.65348 * 4 2 1 34 34 H 1.09007 * 109.43462 * 305.37306 * 4 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 36 36 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 37 37 H 1.08004 * 119.96361 * 359.97438 * 10 9 8 38 38 H 1.08005 * 119.96053 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00370 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.59009 * 66.42846 * 17 5 4 41 41 H 1.09003 * 109.58381 * 186.71554 * 17 5 4 42 42 H 1.08996 * 109.49478 * 174.58662 * 18 17 5 43 43 H 1.08997 * 109.50060 * 294.68386 * 18 17 5 44 44 H 0.96999 * 120.00224 * 25.06844 * 21 19 2 45 45 H 0.96997 * 119.99663 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7185 -1.2470 5 7 3.5052 -0.8284 -1.1690 6 6 4.2819 -0.3845 -2.1772 7 8 3.7739 0.1065 -3.1630 8 6 5.7814 -0.4985 -2.0795 9 6 6.4103 0.0652 -3.3276 10 6 6.9356 1.3441 -3.3200 11 6 7.5123 1.8627 -4.4640 12 6 7.5648 1.1040 -5.6185 13 6 7.0400 -0.1763 -5.6294 14 9 7.0904 -0.9182 -6.7573 15 6 6.4672 -0.6992 -4.4795 16 9 5.9587 -1.9508 -4.4864 17 6 4.1058 -1.4256 0.0315 18 6 3.5708 -0.6940 1.2666 19 6 2.0408 -0.7228 1.2485 20 1 1.6577 -0.2243 2.1389 21 7 1.5789 -2.1129 1.2309 22 6 1.4474 -2.8056 2.4048 23 1 1.6838 -2.3270 3.3437 24 6 1.0102 -4.1230 2.3881 25 7 0.7226 -4.7065 1.2439 26 14 0.8315 -5.0681 3.9895 27 1 -0.1476 -4.3763 4.8660 28 1 0.3517 -6.4437 3.7015 29 1 2.1475 -5.1355 4.6740 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7652 -0.1497 -2.1346 34 1 1.6031 -1.7150 -1.2974 35 1 6.1324 0.0595 -1.2115 36 1 6.0600 -1.5471 -1.9745 37 1 6.8944 1.9388 -2.4194 38 1 7.9217 2.8621 -4.4562 39 1 8.0153 1.5105 -6.5119 40 1 3.8385 -2.4808 0.0875 41 1 5.1903 -1.3253 -0.0140 42 1 3.9333 -1.1885 2.1677 43 1 3.9155 0.3400 1.2547 44 1 1.3662 -2.5427 0.3878 45 1 0.4175 -5.6272 1.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036193162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:28 Heat of formation + Delta-G solvation = -107.571693 kcal Electronic energy + Delta-G solvation = -29813.835601 eV Core-core repulsion = 25466.599553 eV Total energy + Delta-G solvation = -4347.236049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.52760 -49.62332 -41.46432 -39.98350 -38.91416 -35.85285 -34.64347 -33.77207 -32.93482 -31.26840 -30.90211 -29.38290 -27.32613 -26.27021 -25.24548 -23.82095 -23.33721 -23.01615 -20.88375 -19.62502 -19.23936 -18.89413 -18.34343 -18.23804 -17.86595 -17.30263 -16.83121 -16.65800 -16.22513 -16.05172 -15.85651 -15.73288 -15.53330 -15.46611 -14.92427 -14.75257 -14.68941 -14.36534 -14.12066 -13.98522 -13.59150 -13.20577 -13.01123 -12.98550 -12.91876 -12.82074 -12.71497 -12.64545 -12.39522 -12.18667 -12.14933 -11.94280 -11.87357 -11.55939 -11.13876 -10.97138 -10.79541 -9.89242 -9.72733 -9.58856 -8.90937 -7.87608 -5.13779 -0.04035 -0.02343 1.50153 1.51467 1.57329 1.58982 1.98563 2.45636 2.60786 2.81670 3.28054 3.45269 3.46607 3.57878 3.76005 3.90127 3.90882 3.96803 4.07945 4.12862 4.19504 4.29186 4.34404 4.42298 4.47541 4.55722 4.68803 4.73211 4.80696 4.86676 4.89066 4.99245 5.01228 5.06228 5.15340 5.18091 5.25018 5.29102 5.31955 5.33854 5.49304 5.61703 5.66717 5.79447 6.34055 6.46210 7.13046 7.41343 8.19084 8.41299 9.35677 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.002723 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.909529 B =10280.268826 C =10759.345715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.099 4.099 9 C -0.083 4.083 10 C -0.085 4.085 11 C -0.087 4.087 12 C -0.123 4.123 13 C 0.037 3.963 14 F -0.146 7.146 15 C 0.046 3.954 16 F -0.150 7.150 17 C 0.116 3.884 18 C -0.141 4.141 19 C 0.170 3.830 20 H 0.049 0.951 21 N -0.727 5.727 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.972 5.972 26 Si 0.964 3.036 27 H -0.282 1.282 28 H -0.305 1.305 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.842 17.588 -7.483 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.108 0.892 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.302 3.698 7 O -0.463 6.463 8 C -0.138 4.138 9 C -0.085 4.085 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.141 4.141 13 C 0.017 3.983 14 F -0.125 7.125 15 C 0.026 3.974 16 F -0.128 7.128 17 C -0.006 4.006 18 C -0.181 4.181 19 C 0.062 3.938 20 H 0.067 0.933 21 N -0.368 5.368 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.623 5.623 26 Si 0.795 3.205 27 H -0.208 1.208 28 H -0.232 1.232 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.172 0.828 36 H 0.129 0.871 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.188 0.812 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.549 17.710 -7.838 25.475 hybrid contribution -0.976 -2.211 0.090 2.418 sum 15.573 15.500 -7.749 23.298 Atomic orbital electron populations 1.21609 0.94390 1.01311 1.01743 1.21536 0.96345 0.99511 0.94190 0.89169 1.21359 0.79763 0.99849 0.98935 1.48140 1.06571 1.59666 1.18751 1.20941 0.90114 0.76927 0.81781 1.90668 1.76386 1.47073 1.32207 1.20737 0.89836 1.05222 0.98014 1.19523 1.00278 0.95825 0.92861 1.21485 0.95403 0.92254 1.01146 1.21557 0.97143 1.01417 0.90355 1.21488 0.99887 0.90475 1.02266 1.18090 1.05673 0.92963 0.81553 1.91474 1.94934 1.76885 1.49180 1.18022 1.02080 0.81624 0.95712 1.91463 1.85453 1.38816 1.97098 1.21759 0.98656 0.96911 0.83312 1.22392 0.97913 1.00632 0.97190 1.20479 0.92747 0.84941 0.95646 0.93333 1.42623 1.79207 1.09422 1.05513 1.19549 1.34582 0.93763 0.87737 0.90463 1.25413 1.03752 0.98562 0.99076 1.69808 1.54061 1.12795 1.25652 0.85344 0.77914 0.77275 0.80011 1.20835 1.23170 1.20359 0.92002 0.91922 0.94475 0.90293 0.93895 0.82826 0.87150 0.80939 0.79929 0.81172 0.93440 0.86995 0.91290 0.89746 0.79507 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.06 71.98 0.65 -3.52 16 2 C -0.10 -2.96 2.65 -10.86 -0.03 -2.99 16 3 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.12 4.22 5.40 86.22 0.47 4.69 16 5 N -0.60 -18.24 2.98 -819.72 -2.44 -20.68 16 6 C 0.51 15.20 7.69 87.65 0.67 15.88 16 7 O -0.58 -21.62 15.37 -3.04 -0.05 -21.67 16 8 C -0.10 -2.01 3.90 29.10 0.11 -1.90 16 9 C -0.08 -1.78 4.42 -19.83 -0.09 -1.87 16 10 C -0.09 -1.15 9.67 22.27 0.22 -0.93 16 11 C -0.09 -0.92 10.04 22.27 0.22 -0.70 16 12 C -0.12 -1.84 10.02 22.30 0.22 -1.62 16 13 C 0.04 0.89 7.31 22.41 0.16 1.06 16 14 F -0.15 -3.97 17.18 44.97 0.77 -3.20 16 15 C 0.05 1.24 7.14 22.41 0.16 1.40 16 16 F -0.15 -4.96 16.57 44.97 0.75 -4.22 16 17 C 0.12 3.26 6.09 86.36 0.53 3.78 16 18 C -0.14 -3.96 5.78 30.67 0.18 -3.78 16 19 C 0.17 5.91 2.53 45.02 0.11 6.03 16 20 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.73 -33.23 3.64 -322.82 -1.18 -34.41 16 22 C -0.22 -11.54 9.93 84.04 0.83 -10.71 16 23 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 25 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 26 Si 0.96 45.01 29.55 68.60 2.03 47.03 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.42 7.54 -2.39 -0.02 1.40 16 33 H 0.08 2.75 7.01 -2.39 -0.02 2.73 16 34 H 0.04 1.73 6.64 -2.38 -0.02 1.72 16 35 H 0.15 1.76 7.56 -2.39 -0.02 1.75 16 36 H 0.11 2.23 7.73 -2.39 -0.02 2.21 16 37 H 0.17 1.14 8.04 -2.91 -0.02 1.12 16 38 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 41 H 0.11 2.19 5.93 -2.39 -0.01 2.18 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.37 18.95 5.94 -92.71 -0.55 18.40 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -73.22 371.97 5.53 -67.70 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.47 Total: 26.45 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.89 Total: 1.08 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.33 Total: -113.17 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 1.52 Total: -7.42 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.22 5.53 -67.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036193162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.875 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds