Wall clock time and date at job start Tue Mar 31 2020 20:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47539 * 2 1 4 4 C 1.50704 * 109.46849 * 120.00116 * 2 1 3 5 5 N 1.31243 * 124.05373 * 299.99665 * 4 2 1 6 6 N 1.27336 * 120.03716 * 180.02562 * 5 4 2 7 7 S 1.56635 * 109.74088 * 359.97438 * 6 5 4 8 8 C 1.38248 * 124.05576 * 120.00052 * 4 2 1 9 9 C 1.47162 * 128.47594 * 359.95849 * 8 4 2 10 10 O 1.21628 * 120.00248 * 37.66240 * 9 8 4 11 11 N 1.34778 * 120.00256 * 217.65936 * 9 8 4 12 12 C 1.46927 * 120.62544 * 5.63279 * 11 9 8 13 13 C 1.53187 * 108.77485 * 126.37094 * 12 11 9 14 14 C 1.53047 * 109.31485 * 54.63181 * 13 12 11 15 15 H 1.09003 * 109.45976 * 178.61314 * 14 13 12 16 16 N 1.46493 * 109.45704 * 58.65734 * 14 13 12 17 17 C 1.36939 * 120.00471 * 85.00141 * 16 14 13 18 18 H 1.07998 * 119.99604 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00157 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46876 * 90.00635 * 21 19 17 23 23 H 1.48507 * 109.47076 * 210.00175 * 21 19 17 24 24 H 1.48495 * 109.47491 * 330.00602 * 21 19 17 25 25 C 1.53038 * 109.53770 * 298.63486 * 14 13 12 26 26 H 1.08998 * 109.49694 * 301.41545 * 25 14 13 27 27 C 1.52991 * 109.49841 * 181.34940 * 25 14 13 28 28 C 1.46928 * 120.63328 * 185.35278 * 11 9 8 29 29 H 1.09006 * 109.47255 * 300.00345 * 1 2 3 30 30 H 1.09000 * 109.46844 * 60.00110 * 1 2 3 31 31 H 1.08992 * 109.47871 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47152 * 239.99246 * 2 1 3 33 33 H 1.09003 * 109.47729 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46962 * 299.99817 * 3 2 1 35 35 H 1.08999 * 109.47514 * 59.99467 * 3 2 1 36 36 H 1.09007 * 109.58107 * 246.15619 * 12 11 9 37 37 H 1.08992 * 109.59125 * 6.57986 * 12 11 9 38 38 H 1.09004 * 109.50223 * 174.58214 * 13 12 11 39 39 H 1.09000 * 109.50139 * 294.67720 * 13 12 11 40 40 H 0.97007 * 119.99790 * 264.99658 * 16 14 13 41 41 H 0.96998 * 119.99922 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47140 * 59.99942 * 27 25 14 43 43 H 1.09004 * 109.47102 * 179.97438 * 27 25 14 44 44 H 1.09005 * 109.47160 * 300.00044 * 27 25 14 45 45 H 1.09002 * 109.58254 * 353.41439 * 28 11 9 46 46 H 1.09000 * 109.58330 * 113.84334 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7647 -0.3320 2.4583 6 7 2.2305 -0.9900 3.4440 7 16 3.0825 -2.1954 2.9201 8 6 2.8302 -1.8390 1.2014 9 6 3.3441 -2.5671 0.0302 10 8 3.6985 -1.9548 -0.9591 11 7 3.4220 -3.9124 0.0539 12 6 2.8849 -4.6734 1.1902 13 6 1.9133 -5.7321 0.6594 14 6 2.6229 -6.5888 -0.3917 15 1 1.9411 -7.3586 -0.7532 16 7 3.7997 -7.2221 0.2084 17 6 3.6690 -8.4018 0.8914 18 1 2.6982 -8.8651 0.9880 19 6 4.7842 -9.0021 1.4595 20 7 5.9672 -8.4372 1.3422 21 14 4.6056 -10.6110 2.3918 22 1 4.7795 -11.7487 1.4534 23 1 5.6396 -10.6841 3.4553 24 1 3.2562 -10.6791 3.0078 25 6 3.0605 -5.7049 -1.5619 26 1 2.1881 -5.2140 -1.9931 27 6 3.7398 -6.5675 -2.6273 28 6 4.0402 -4.6462 -1.0589 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.7019 -5.1610 1.7221 37 1 2.3577 -3.9992 1.8650 38 1 1.5812 -6.3661 1.4816 39 1 1.0516 -5.2410 0.2072 40 1 4.6716 -6.8058 0.1219 41 1 6.7464 -8.8565 1.7396 42 1 3.0393 -7.3223 -2.9845 43 1 4.0509 -5.9376 -3.4607 44 1 4.6128 -7.0573 -2.1958 45 1 4.2748 -3.9539 -1.8674 46 1 4.9531 -5.1316 -0.7140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036237389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:15 Heat of formation + Delta-G solvation = 40.807882 kcal Electronic energy + Delta-G solvation = -28294.408151 eV Core-core repulsion = 24539.739461 eV Total energy + Delta-G solvation = -3754.668690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18400 -40.04665 -37.84804 -35.73374 -34.49010 -33.04597 -31.58641 -31.20626 -29.30680 -27.88253 -27.32257 -26.28018 -25.12186 -23.61149 -23.15747 -21.81568 -21.71430 -19.75541 -18.42734 -18.22189 -17.43309 -17.03914 -16.30644 -15.89138 -15.42398 -14.98745 -14.60428 -14.52357 -14.36096 -14.10316 -13.84766 -13.42840 -13.32275 -13.19257 -13.01433 -12.64108 -12.39990 -12.33180 -12.32035 -11.79166 -11.55312 -11.45163 -11.35611 -11.30769 -11.09785 -10.98111 -10.89357 -10.71096 -10.60013 -10.31342 -10.25300 -10.00895 -9.94799 -9.82537 -9.64715 -9.59107 -9.00784 -8.46526 -7.06792 -5.86595 -3.15652 -0.28990 0.68397 1.41315 1.88459 2.73930 3.01236 3.36902 3.43023 3.44412 3.74550 4.32739 4.40463 4.50938 4.84355 4.93767 4.94856 4.99521 5.16862 5.24107 5.36476 5.45305 5.47916 5.48272 5.60368 5.66138 5.67263 5.71030 5.79565 5.83953 5.92080 5.93544 6.05786 6.08682 6.15004 6.20506 6.25168 6.39281 6.45720 6.55948 6.63859 6.79056 6.87793 7.36581 7.57853 7.62085 8.00541 8.31657 9.43694 9.98594 10.33770 11.35574 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.003519 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.004403 B = 7955.811714 C = 8917.245673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.095 3.905 5 N -0.246 5.246 6 N -0.272 5.272 7 S 0.439 5.561 8 C -0.283 4.283 9 C 0.599 3.401 10 O -0.526 6.526 11 N -0.588 5.588 12 C 0.106 3.894 13 C -0.148 4.148 14 C 0.179 3.821 15 H 0.054 0.946 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.109 4.109 26 H 0.067 0.933 27 C -0.137 4.137 28 C 0.121 3.879 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 14.202 -2.907 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.052 4.052 5 N -0.111 5.111 6 N -0.252 5.252 7 S 0.577 5.423 8 C -0.424 4.424 9 C 0.383 3.617 10 O -0.404 6.404 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.072 0.928 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.129 4.129 26 H 0.086 0.914 27 C -0.195 4.195 28 C -0.001 4.001 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.932 14.337 -1.312 16.438 hybrid contribution 0.078 -0.730 -0.580 0.935 sum -7.854 13.607 -1.892 15.825 Atomic orbital electron populations 1.21839 0.93237 1.02292 1.02783 1.19896 0.96352 0.96246 0.91427 1.21777 1.01451 0.93984 1.02551 1.22814 0.95532 0.92493 0.94326 1.70538 1.20384 1.24221 0.95988 1.78757 1.14155 1.07784 1.24458 1.83026 1.39539 1.25909 0.93856 1.27785 1.10217 1.03688 1.00680 1.16497 0.78568 0.81913 0.84700 1.90792 1.49642 1.67468 1.32496 1.47998 1.57524 1.04343 1.22132 1.22006 0.99012 0.93444 0.87255 1.22534 0.97051 0.97515 1.01856 1.20219 0.90551 0.92447 0.89989 0.92789 1.42478 1.04722 1.25141 1.63761 1.19205 0.93819 0.98137 1.25965 0.91210 1.24697 0.95439 0.98961 1.01454 1.69639 0.98254 1.40174 1.49858 0.86249 0.76962 0.83887 0.79397 1.21799 1.21847 1.20822 1.21640 0.98251 0.95944 0.97058 0.91432 1.21662 1.01832 0.98977 0.97012 1.21692 0.96163 0.93737 0.88491 0.91643 0.91442 0.92620 0.87625 0.92378 0.91516 0.91817 0.88576 0.92343 0.90314 0.93145 0.78095 0.93457 0.92666 0.93641 0.90943 0.89277 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.16 37.16 0.34 -1.02 16 2 C -0.02 -0.19 3.23 -91.77 -0.30 -0.49 16 3 C -0.14 -1.37 9.16 37.15 0.34 -1.03 16 4 C 0.10 1.26 5.53 -82.84 -0.46 0.81 16 5 N -0.25 -3.42 11.51 33.42 0.38 -3.04 16 6 N -0.27 -3.76 12.51 60.35 0.75 -3.00 16 7 S 0.44 5.46 20.74 -107.50 -2.23 3.23 16 8 C -0.28 -3.91 5.77 -35.96 -0.21 -4.12 16 9 C 0.60 9.14 7.39 -12.64 -0.09 9.05 16 10 O -0.53 -8.98 15.01 5.25 0.08 -8.91 16 11 N -0.59 -8.84 2.98 -174.40 -0.52 -9.36 16 12 C 0.11 1.58 5.52 -3.71 -0.02 1.56 16 13 C -0.15 -2.28 5.78 -26.61 -0.15 -2.44 16 14 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -15.43 3.64 -53.39 -0.19 -15.62 16 17 C -0.24 -5.95 9.93 -15.06 -0.15 -6.10 16 18 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16 21 Si 0.90 21.05 29.55 -169.99 -5.02 16.02 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.11 -1.63 2.65 -90.73 -0.24 -1.87 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 C -0.14 -2.02 9.06 37.15 0.34 -1.68 16 28 C 0.12 1.85 5.41 -3.93 -0.02 1.83 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.31 6.35 -51.93 -0.33 0.98 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.63 7.74 -51.93 -0.40 1.23 16 37 H 0.06 0.77 4.43 -37.42 -0.17 0.61 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.38 8.82 5.94 -40.82 -0.24 8.57 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.25 7.54 -51.93 -0.39 0.86 16 45 H 0.09 1.34 6.99 -51.93 -0.36 0.97 16 46 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -28.19 376.35 -8.10 -36.29 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.85 Total: 6.84 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.89 Total: -2.95 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 1.15 Total: -56.20 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -2.23 Total: 3.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.19 -8.10 -36.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036237389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.100 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds