Wall clock time and date at job start Tue Mar 31 2020 20:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47539 * 2 1 4 4 C 1.50704 * 109.46849 * 120.00116 * 2 1 3 5 5 N 1.31243 * 124.05373 * 299.99665 * 4 2 1 6 6 N 1.27336 * 120.03716 * 180.02562 * 5 4 2 7 7 S 1.56635 * 109.74088 * 359.97438 * 6 5 4 8 8 C 1.38248 * 124.05576 * 120.00052 * 4 2 1 9 9 C 1.47162 * 128.47594 * 359.95849 * 8 4 2 10 10 O 1.21628 * 120.00248 * 37.66240 * 9 8 4 11 11 N 1.34778 * 120.00256 * 217.65936 * 9 8 4 12 12 C 1.46927 * 120.62544 * 5.63279 * 11 9 8 13 13 C 1.53187 * 108.77485 * 126.37094 * 12 11 9 14 14 C 1.53047 * 109.31485 * 54.63181 * 13 12 11 15 15 H 1.09003 * 109.45976 * 178.61314 * 14 13 12 16 16 N 1.46493 * 109.45704 * 58.65734 * 14 13 12 17 17 C 1.36939 * 120.00471 * 85.00141 * 16 14 13 18 18 H 1.07998 * 119.99604 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00157 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99791 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46876 * 90.00635 * 21 19 17 23 23 H 1.48507 * 109.47076 * 210.00175 * 21 19 17 24 24 H 1.48495 * 109.47491 * 330.00602 * 21 19 17 25 25 C 1.53038 * 109.53770 * 298.63486 * 14 13 12 26 26 H 1.08998 * 109.49694 * 301.41545 * 25 14 13 27 27 C 1.52991 * 109.49841 * 181.34940 * 25 14 13 28 28 C 1.46928 * 120.63328 * 185.35278 * 11 9 8 29 29 H 1.09006 * 109.47255 * 300.00345 * 1 2 3 30 30 H 1.09000 * 109.46844 * 60.00110 * 1 2 3 31 31 H 1.08992 * 109.47871 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47152 * 239.99246 * 2 1 3 33 33 H 1.09003 * 109.47729 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46962 * 299.99817 * 3 2 1 35 35 H 1.08999 * 109.47514 * 59.99467 * 3 2 1 36 36 H 1.09007 * 109.58107 * 246.15619 * 12 11 9 37 37 H 1.08992 * 109.59125 * 6.57986 * 12 11 9 38 38 H 1.09004 * 109.50223 * 174.58214 * 13 12 11 39 39 H 1.09000 * 109.50139 * 294.67720 * 13 12 11 40 40 H 0.97007 * 119.99790 * 264.99658 * 16 14 13 41 41 H 0.96998 * 119.99922 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47140 * 59.99942 * 27 25 14 43 43 H 1.09004 * 109.47102 * 179.97438 * 27 25 14 44 44 H 1.09005 * 109.47160 * 300.00044 * 27 25 14 45 45 H 1.09002 * 109.58254 * 353.41439 * 28 11 9 46 46 H 1.09000 * 109.58330 * 113.84334 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7647 -0.3320 2.4583 6 7 2.2305 -0.9900 3.4440 7 16 3.0825 -2.1954 2.9201 8 6 2.8302 -1.8390 1.2014 9 6 3.3441 -2.5671 0.0302 10 8 3.6985 -1.9548 -0.9591 11 7 3.4220 -3.9124 0.0539 12 6 2.8849 -4.6734 1.1902 13 6 1.9133 -5.7321 0.6594 14 6 2.6229 -6.5888 -0.3917 15 1 1.9411 -7.3586 -0.7532 16 7 3.7997 -7.2221 0.2084 17 6 3.6690 -8.4018 0.8914 18 1 2.6982 -8.8651 0.9880 19 6 4.7842 -9.0021 1.4595 20 7 5.9672 -8.4372 1.3422 21 14 4.6056 -10.6110 2.3918 22 1 4.7795 -11.7487 1.4534 23 1 5.6396 -10.6841 3.4553 24 1 3.2562 -10.6791 3.0078 25 6 3.0605 -5.7049 -1.5619 26 1 2.1881 -5.2140 -1.9931 27 6 3.7398 -6.5675 -2.6273 28 6 4.0402 -4.6462 -1.0589 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.7019 -5.1610 1.7221 37 1 2.3577 -3.9992 1.8650 38 1 1.5812 -6.3661 1.4816 39 1 1.0516 -5.2410 0.2072 40 1 4.6716 -6.8058 0.1219 41 1 6.7464 -8.8565 1.7396 42 1 3.0393 -7.3223 -2.9845 43 1 4.0509 -5.9376 -3.4607 44 1 4.6128 -7.0573 -2.1958 45 1 4.2748 -3.9539 -1.8674 46 1 4.9531 -5.1316 -0.7140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036237389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:14 Heat of formation + Delta-G solvation = 24.984947 kcal Electronic energy + Delta-G solvation = -28295.094285 eV Core-core repulsion = 24539.739461 eV Total energy + Delta-G solvation = -3755.354824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25474 -41.28299 -39.17013 -36.62912 -35.96497 -34.58494 -33.07257 -32.25092 -30.96127 -28.99231 -28.06749 -27.52326 -26.52405 -25.33960 -24.16803 -23.12025 -22.72744 -20.94613 -19.76637 -19.36729 -19.10306 -18.25666 -17.47774 -16.98321 -16.69638 -16.30178 -16.03460 -15.88452 -15.60024 -15.25708 -15.10350 -14.90496 -14.45482 -14.27483 -14.11772 -14.04326 -13.64302 -13.36102 -13.12477 -13.03926 -12.97502 -12.85018 -12.71749 -12.46219 -12.25740 -12.20792 -12.11036 -12.03816 -11.96271 -11.92685 -11.57386 -11.46467 -11.15544 -11.11354 -10.93018 -10.86649 -10.61172 -9.75279 -8.90308 -7.86178 -5.11954 -1.36762 -0.36626 0.35858 0.82657 1.51528 1.53360 1.56199 1.59812 1.80450 2.62055 2.73099 3.19340 3.40995 3.47682 3.76374 3.86039 3.93691 3.97029 4.05966 4.11468 4.14028 4.25620 4.35377 4.50361 4.56338 4.61492 4.70236 4.79501 4.83052 4.90032 4.91282 4.92750 5.01507 5.10068 5.14644 5.18362 5.23858 5.29898 5.30786 5.35733 5.46175 5.59154 5.64661 6.14811 6.35863 6.52452 6.78959 7.44309 8.19313 8.43168 9.36695 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.003519 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.004403 B = 7955.811714 C = 8917.245673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.020 4.020 3 C -0.136 4.136 4 C 0.101 3.899 5 N -0.256 5.256 6 N -0.284 5.284 7 S 0.476 5.524 8 C -0.305 4.305 9 C 0.603 3.397 10 O -0.545 6.545 11 N -0.588 5.588 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.724 5.724 17 C -0.225 4.225 18 H 0.075 0.925 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.958 3.042 22 H -0.295 1.295 23 H -0.303 1.303 24 H -0.271 1.271 25 C -0.099 4.099 26 H 0.088 0.912 27 C -0.131 4.131 28 C 0.125 3.875 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.375 0.625 41 H 0.247 0.753 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 15.152 -3.362 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 C -0.194 4.194 4 C -0.047 4.047 5 N -0.121 5.121 6 N -0.264 5.264 7 S 0.613 5.387 8 C -0.445 4.445 9 C 0.389 3.611 10 O -0.424 6.424 11 N -0.319 5.319 12 C -0.011 4.011 13 C -0.183 4.183 14 C 0.064 3.936 15 H 0.069 0.931 16 N -0.365 5.365 17 C -0.358 4.358 18 H 0.093 0.907 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.789 3.211 22 H -0.223 1.223 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.119 4.119 26 H 0.107 0.893 27 C -0.189 4.189 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.209 0.791 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.113 0.887 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.929 15.296 -1.770 18.322 hybrid contribution 0.635 -0.972 -0.469 1.252 sum -9.294 14.324 -2.240 17.222 Atomic orbital electron populations 1.21818 0.91698 1.02331 1.03778 1.20021 0.97590 0.96620 0.89996 1.21764 1.00681 0.93274 1.03655 1.23170 0.94712 0.92037 0.94742 1.70582 1.20881 1.24543 0.96098 1.78662 1.14494 1.08361 1.24917 1.82904 1.38284 1.24794 0.92705 1.27703 1.11420 1.04418 1.00968 1.16571 0.78020 0.81707 0.84798 1.90779 1.50476 1.67755 1.33415 1.47975 1.57485 1.04416 1.22016 1.21895 0.98227 0.93624 0.87347 1.22417 0.97587 0.97233 1.01022 1.20431 0.89124 0.92923 0.91112 0.93067 1.42576 1.05755 1.24516 1.63637 1.19534 0.93591 0.98511 1.24124 0.90722 1.25304 0.95503 1.01775 1.03494 1.69777 0.98663 1.41494 1.51735 0.85364 0.76901 0.80858 0.77950 1.22273 1.22977 1.19605 1.21565 0.98810 0.95369 0.96132 0.89329 1.21595 1.00621 0.99237 0.97457 1.21596 0.95583 0.93825 0.88681 0.91785 0.89313 0.93046 0.88645 0.93552 0.89331 0.91803 0.90906 0.90530 0.90994 0.90726 0.79107 0.94396 0.92215 0.91450 0.93990 0.88697 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.16 71.98 0.66 -1.65 16 2 C -0.02 -0.42 3.23 -11.54 -0.04 -0.45 16 3 C -0.14 -2.44 9.16 71.98 0.66 -1.78 16 4 C 0.10 2.53 5.53 42.65 0.24 2.77 16 5 N -0.26 -6.77 11.51 -48.18 -0.55 -7.33 16 6 N -0.28 -7.49 12.51 37.02 0.46 -7.02 16 7 S 0.48 11.24 20.74 -56.49 -1.17 10.07 16 8 C -0.30 -8.03 5.77 24.62 0.14 -7.89 16 9 C 0.60 17.73 7.39 86.59 0.64 18.37 16 10 O -0.54 -18.05 15.01 -4.12 -0.06 -18.11 16 11 N -0.59 -17.05 2.98 -823.91 -2.45 -19.50 16 12 C 0.11 3.22 5.52 86.36 0.48 3.69 16 13 C -0.14 -4.10 5.78 30.67 0.18 -3.93 16 14 C 0.17 5.74 2.53 45.02 0.11 5.85 16 15 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 16 N -0.72 -31.07 3.64 -322.82 -1.18 -32.25 16 17 C -0.23 -11.12 9.93 84.03 0.83 -10.29 16 18 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 19 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 20 N -0.97 -54.93 13.06 21.65 0.28 -54.65 16 21 Si 0.96 43.59 29.55 68.60 2.03 45.62 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.10 -2.80 2.65 -10.86 -0.03 -2.83 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 27 C -0.13 -3.71 9.06 71.98 0.65 -3.06 16 28 C 0.12 3.73 5.41 86.22 0.47 4.20 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 2.21 6.35 -2.39 -0.02 2.20 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 2.47 7.74 -2.38 -0.02 2.45 16 37 H 0.08 1.90 4.43 -11.62 -0.05 1.85 16 38 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.38 17.58 5.94 -92.70 -0.55 17.02 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 44 H 0.04 1.44 7.54 -2.38 -0.02 1.43 16 45 H 0.09 2.74 6.99 -2.39 -0.02 2.73 16 46 H 0.06 2.11 6.64 -2.39 -0.02 2.09 16 Total: -1.00 -59.92 376.35 3.22 -56.70 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.41 Total: 26.59 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.46 Total: -0.12 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.44 Total: -120.75 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.06 Total: -18.11 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 11.24 SS G_CDS: -1.17 Total: 10.07 kcal Total: -59.92 3.22 -56.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036237389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.686 kcal (2) G-P(sol) polarization free energy of solvation -59.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds