Wall clock time and date at job start Tue Mar 31 2020 20:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 C 1.50695 * 109.47472 * 120.00378 * 2 1 3 5 5 N 1.31237 * 124.05835 * 300.02532 * 4 2 1 6 6 N 1.27332 * 120.03951 * 179.97438 * 5 4 2 7 7 S 1.56639 * 109.74141 * 359.68957 * 6 5 4 8 8 C 1.38251 * 124.05213 * 119.99993 * 4 2 1 9 9 C 1.47163 * 128.48107 * 0.02562 * 8 4 2 10 10 O 1.21623 * 120.00039 * 323.46410 * 9 8 4 11 11 N 1.34775 * 120.00463 * 143.46104 * 9 8 4 12 12 C 1.46930 * 120.62581 * 354.30501 * 11 9 8 13 13 C 1.53197 * 108.77437 * 233.58323 * 12 11 9 14 14 C 1.53042 * 109.33732 * 305.35223 * 13 12 11 15 15 H 1.09004 * 109.45479 * 181.40472 * 14 13 12 16 16 N 1.46502 * 109.45928 * 301.35742 * 14 13 12 17 17 C 1.36940 * 120.00058 * 275.00409 * 16 14 13 18 18 H 1.08001 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99868 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47109 * 60.00210 * 21 19 17 23 23 H 1.48499 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47447 * 300.00484 * 21 19 17 25 25 C 1.53099 * 109.50599 * 61.34786 * 14 13 12 26 26 H 1.09000 * 109.51811 * 58.62865 * 25 14 13 27 27 C 1.52998 * 109.48840 * 178.70259 * 25 14 13 28 28 C 1.46917 * 120.63583 * 174.27946 * 11 9 8 29 29 H 1.08999 * 109.46886 * 299.99506 * 1 2 3 30 30 H 1.08998 * 109.47503 * 59.99920 * 1 2 3 31 31 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46886 * 240.00494 * 2 1 3 33 33 H 1.09004 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47604 * 300.00198 * 3 2 1 35 35 H 1.08999 * 109.46962 * 60.00540 * 3 2 1 36 36 H 1.09000 * 109.58638 * 113.79602 * 12 11 9 37 37 H 1.08998 * 109.70574 * 353.43896 * 12 11 9 38 38 H 1.08998 * 109.49637 * 65.31839 * 13 12 11 39 39 H 1.08994 * 109.49536 * 185.38226 * 13 12 11 40 40 H 0.97001 * 120.00136 * 95.00059 * 16 14 13 41 41 H 0.96997 * 119.99774 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47213 * 179.85685 * 27 25 14 43 43 H 1.09000 * 109.47184 * 299.85276 * 27 25 14 44 44 H 1.08997 * 109.47537 * 59.85623 * 27 25 14 45 45 H 1.09000 * 109.58912 * 246.20701 * 28 11 9 46 46 H 1.09006 * 109.58589 * 6.48613 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7645 -0.3324 2.4582 6 7 2.2297 -0.9910 3.4437 7 16 3.0755 -2.2008 2.9197 8 6 2.8305 -1.8390 1.2010 9 6 3.3454 -2.5662 0.0298 10 8 2.6575 -2.6787 -0.9669 11 7 4.5792 -3.1076 0.0615 12 6 5.4692 -2.8753 1.2072 13 6 6.8051 -2.3309 0.6915 14 6 7.3710 -3.2890 -0.3593 15 1 8.3336 -2.9162 -0.7096 16 7 7.5490 -4.6159 0.2355 17 6 8.6937 -4.9079 0.9281 18 1 9.4655 -4.1601 1.0354 19 6 8.8620 -6.1650 1.4921 20 7 7.9216 -7.0765 1.3609 21 14 10.4238 -6.5635 2.4362 22 1 10.5581 -5.6335 3.5862 23 1 10.3577 -7.9606 2.9353 24 1 11.5971 -6.4131 1.5384 25 6 6.4000 -3.3852 -1.5391 26 1 6.2479 -2.3944 -1.9672 27 6 6.9811 -4.3178 -2.6037 28 6 5.0596 -3.9415 -1.0486 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 5.6367 -3.8137 1.7359 37 1 5.0161 -2.1507 1.8837 38 1 6.6492 -1.3498 0.2429 39 1 7.5072 -2.2444 1.5207 40 1 6.8559 -5.2877 0.1389 41 1 8.0395 -7.9551 1.7547 42 1 6.2885 -4.3881 -3.4424 43 1 7.9348 -3.9216 -2.9524 44 1 7.1341 -5.3081 -2.1749 45 1 5.1937 -4.9669 -0.7039 46 1 4.3337 -3.9213 -1.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036237399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:22 Heat of formation + Delta-G solvation = 41.006318 kcal Electronic energy + Delta-G solvation = -28289.328781 eV Core-core repulsion = 24534.668696 eV Total energy + Delta-G solvation = -3754.660085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18202 -40.03878 -37.83732 -35.73011 -34.48836 -33.02970 -31.58255 -31.20191 -29.30568 -27.88071 -27.32020 -26.27555 -25.11988 -23.60808 -23.15204 -21.81514 -21.71031 -19.75126 -18.43001 -18.22435 -17.42946 -17.03376 -16.30234 -15.89322 -15.41958 -14.98841 -14.60276 -14.51706 -14.35625 -14.10463 -13.84359 -13.42968 -13.32028 -13.18992 -13.01233 -12.63617 -12.40086 -12.32947 -12.32256 -11.78886 -11.54798 -11.44844 -11.35497 -11.30913 -11.09499 -10.96436 -10.89423 -10.70387 -10.60096 -10.31569 -10.27883 -10.00113 -9.95149 -9.82428 -9.64437 -9.58392 -9.00065 -8.46253 -7.06711 -5.86299 -3.15413 -0.29187 0.68767 1.41454 1.88403 2.74893 3.01143 3.37365 3.42970 3.43801 3.74818 4.32821 4.40558 4.51128 4.84598 4.93997 4.95009 4.99729 5.16741 5.24151 5.36598 5.45444 5.48209 5.48547 5.60339 5.66313 5.67304 5.71222 5.79499 5.84229 5.92134 5.93581 6.05916 6.08683 6.15414 6.20680 6.25470 6.39473 6.45781 6.56126 6.63892 6.79111 6.88067 7.36686 7.58097 7.61713 8.00649 8.31979 9.43898 9.98797 10.34007 11.35794 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003515 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.678713 B = 7964.782104 C = 8930.424531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 C -0.144 4.144 4 C 0.096 3.904 5 N -0.246 5.246 6 N -0.272 5.272 7 S 0.440 5.560 8 C -0.284 4.284 9 C 0.599 3.401 10 O -0.526 6.526 11 N -0.589 5.589 12 C 0.106 3.894 13 C -0.148 4.148 14 C 0.179 3.821 15 H 0.054 0.946 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.009 4.009 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.108 4.108 26 H 0.068 0.932 27 C -0.137 4.137 28 C 0.121 3.879 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 12.479 -2.946 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.051 4.051 5 N -0.111 5.111 6 N -0.252 5.252 7 S 0.577 5.423 8 C -0.424 4.424 9 C 0.383 3.617 10 O -0.404 6.404 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.189 4.189 14 C 0.068 3.932 15 H 0.072 0.928 16 N -0.361 5.361 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.128 4.128 26 H 0.086 0.914 27 C -0.195 4.195 28 C -0.001 4.001 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.685 12.348 -1.361 16.386 hybrid contribution 0.652 -0.317 -0.560 0.917 sum -10.033 12.032 -1.921 15.783 Atomic orbital electron populations 1.21777 0.92991 1.02442 1.02547 1.19903 0.96878 0.95713 0.91463 1.21839 1.01183 0.94350 1.02774 1.22813 0.94876 0.93117 0.94321 1.70537 1.19766 1.24852 0.95995 1.78755 1.13967 1.07980 1.24473 1.83032 1.37666 1.27730 0.93874 1.27787 1.09799 1.04170 1.00667 1.16496 0.81812 0.78593 0.84775 1.90789 1.57857 1.59762 1.31998 1.47993 1.13131 1.49050 1.21834 1.22005 0.90450 1.02252 0.87025 1.22532 0.95776 0.98716 1.01917 1.20232 0.95500 0.87511 0.89961 0.92781 1.42472 1.21082 1.09099 1.63438 1.19163 0.95529 0.96748 1.25770 0.91262 1.24696 0.98010 0.96401 1.01411 1.69630 1.33519 1.05015 1.49785 0.86321 0.83130 0.77162 0.79843 1.21321 1.21778 1.21345 1.21726 0.94733 0.99342 0.97042 0.91400 1.21664 0.99860 1.00968 0.97021 1.21782 0.95744 0.93990 0.88572 0.91831 0.91508 0.92389 0.87563 0.92627 0.91451 0.91647 0.88596 0.92327 0.93143 0.90323 0.78092 0.93403 0.93645 0.92677 0.90945 0.90005 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 2 C -0.02 -0.20 3.23 -91.78 -0.30 -0.49 16 3 C -0.14 -1.36 9.16 37.16 0.34 -1.02 16 4 C 0.10 1.27 5.53 -82.84 -0.46 0.81 16 5 N -0.25 -3.43 11.51 33.42 0.38 -3.04 16 6 N -0.27 -3.77 12.51 60.35 0.75 -3.01 16 7 S 0.44 5.47 20.68 -107.50 -2.22 3.25 16 8 C -0.28 -3.92 5.80 -35.96 -0.21 -4.13 16 9 C 0.60 9.14 7.41 -12.64 -0.09 9.05 16 10 O -0.53 -8.98 14.96 5.26 0.08 -8.90 16 11 N -0.59 -8.85 2.97 -174.13 -0.52 -9.36 16 12 C 0.11 1.58 5.51 -3.71 -0.02 1.56 16 13 C -0.15 -2.28 5.78 -26.61 -0.15 -2.43 16 14 C 0.18 3.07 2.53 -67.86 -0.17 2.90 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -15.43 3.64 -53.35 -0.19 -15.63 16 17 C -0.24 -5.97 9.93 -15.06 -0.15 -6.12 16 18 H 0.07 1.69 7.83 -52.49 -0.41 1.27 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -25.90 13.06 55.49 0.72 -25.18 16 21 Si 0.90 21.05 29.55 -169.99 -5.02 16.02 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 C -0.11 -1.62 2.67 -90.47 -0.24 -1.86 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 C -0.14 -2.02 9.05 37.16 0.34 -1.69 16 28 C 0.12 1.85 5.43 -3.71 -0.02 1.83 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.32 6.31 -51.93 -0.33 0.99 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.63 7.74 -51.93 -0.40 1.23 16 37 H 0.06 0.78 4.40 -36.47 -0.16 0.62 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.38 8.82 5.93 -40.82 -0.24 8.57 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 45 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 46 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -28.16 376.21 -8.09 -36.24 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.85 Total: 6.91 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.89 Total: -2.97 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 1.15 Total: -56.22 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -2.22 Total: 3.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.16 -8.09 -36.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036237399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.251 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds