Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 C 1.50695 * 109.47472 * 120.00378 * 2 1 3 5 5 N 1.31237 * 124.05835 * 300.02532 * 4 2 1 6 6 N 1.27332 * 120.03951 * 179.97438 * 5 4 2 7 7 S 1.56639 * 109.74141 * 359.68957 * 6 5 4 8 8 C 1.38251 * 124.05213 * 119.99993 * 4 2 1 9 9 C 1.47163 * 128.48107 * 0.02562 * 8 4 2 10 10 O 1.21623 * 120.00039 * 323.46410 * 9 8 4 11 11 N 1.34775 * 120.00463 * 143.46104 * 9 8 4 12 12 C 1.46930 * 120.62581 * 354.30501 * 11 9 8 13 13 C 1.53197 * 108.77437 * 233.58323 * 12 11 9 14 14 C 1.53042 * 109.33732 * 305.35223 * 13 12 11 15 15 H 1.09004 * 109.45479 * 181.40472 * 14 13 12 16 16 N 1.46502 * 109.45928 * 301.35742 * 14 13 12 17 17 C 1.36940 * 120.00058 * 275.00409 * 16 14 13 18 18 H 1.08001 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99868 * 179.97438 * 17 16 14 20 20 N 1.31625 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99962 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47109 * 60.00210 * 21 19 17 23 23 H 1.48499 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47447 * 300.00484 * 21 19 17 25 25 C 1.53099 * 109.50599 * 61.34786 * 14 13 12 26 26 H 1.09000 * 109.51811 * 58.62865 * 25 14 13 27 27 C 1.52998 * 109.48840 * 178.70259 * 25 14 13 28 28 C 1.46917 * 120.63583 * 174.27946 * 11 9 8 29 29 H 1.08999 * 109.46886 * 299.99506 * 1 2 3 30 30 H 1.08998 * 109.47503 * 59.99920 * 1 2 3 31 31 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46886 * 240.00494 * 2 1 3 33 33 H 1.09004 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47604 * 300.00198 * 3 2 1 35 35 H 1.08999 * 109.46962 * 60.00540 * 3 2 1 36 36 H 1.09000 * 109.58638 * 113.79602 * 12 11 9 37 37 H 1.08998 * 109.70574 * 353.43896 * 12 11 9 38 38 H 1.08998 * 109.49637 * 65.31839 * 13 12 11 39 39 H 1.08994 * 109.49536 * 185.38226 * 13 12 11 40 40 H 0.97001 * 120.00136 * 95.00059 * 16 14 13 41 41 H 0.96997 * 119.99774 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47213 * 179.85685 * 27 25 14 43 43 H 1.09000 * 109.47184 * 299.85276 * 27 25 14 44 44 H 1.08997 * 109.47537 * 59.85623 * 27 25 14 45 45 H 1.09000 * 109.58912 * 246.20701 * 28 11 9 46 46 H 1.09006 * 109.58589 * 6.48613 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7645 -0.3324 2.4582 6 7 2.2297 -0.9910 3.4437 7 16 3.0755 -2.2008 2.9197 8 6 2.8305 -1.8390 1.2010 9 6 3.3454 -2.5662 0.0298 10 8 2.6575 -2.6787 -0.9669 11 7 4.5792 -3.1076 0.0615 12 6 5.4692 -2.8753 1.2072 13 6 6.8051 -2.3309 0.6915 14 6 7.3710 -3.2890 -0.3593 15 1 8.3336 -2.9162 -0.7096 16 7 7.5490 -4.6159 0.2355 17 6 8.6937 -4.9079 0.9281 18 1 9.4655 -4.1601 1.0354 19 6 8.8620 -6.1650 1.4921 20 7 7.9216 -7.0765 1.3609 21 14 10.4238 -6.5635 2.4362 22 1 10.5581 -5.6335 3.5862 23 1 10.3577 -7.9606 2.9353 24 1 11.5971 -6.4131 1.5384 25 6 6.4000 -3.3852 -1.5391 26 1 6.2479 -2.3944 -1.9672 27 6 6.9811 -4.3178 -2.6037 28 6 5.0596 -3.9415 -1.0486 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 5.6367 -3.8137 1.7359 37 1 5.0161 -2.1507 1.8837 38 1 6.6492 -1.3498 0.2429 39 1 7.5072 -2.2444 1.5207 40 1 6.8559 -5.2877 0.1389 41 1 8.0395 -7.9551 1.7547 42 1 6.2885 -4.3881 -3.4424 43 1 7.9348 -3.9216 -2.9524 44 1 7.1341 -5.3081 -2.1749 45 1 5.1937 -4.9669 -0.7039 46 1 4.3337 -3.9213 -1.8615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036237399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = 25.221905 kcal Electronic energy + Delta-G solvation = -28290.013245 eV Core-core repulsion = 24534.668696 eV Total energy + Delta-G solvation = -3755.344549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25373 -41.27553 -39.16014 -36.62752 -35.96310 -34.57080 -33.06518 -32.24865 -30.96066 -28.99154 -28.06682 -27.52032 -26.52045 -25.33712 -24.16375 -23.12028 -22.72442 -20.94344 -19.76912 -19.36927 -19.10266 -18.25067 -17.47335 -16.98679 -16.69463 -16.30132 -16.02533 -15.88550 -15.60222 -15.25678 -15.09776 -14.90538 -14.45260 -14.26825 -14.11686 -14.04387 -13.64521 -13.36337 -13.12168 -13.03905 -12.98057 -12.82443 -12.69700 -12.46231 -12.25538 -12.21058 -12.14973 -12.04792 -11.96475 -11.92275 -11.57247 -11.46410 -11.15637 -11.10784 -10.91930 -10.86590 -10.60460 -9.75012 -8.90140 -7.85887 -5.11712 -1.37111 -0.36380 0.35836 0.82414 1.52796 1.53387 1.57094 1.58839 1.80325 2.62297 2.73188 3.19304 3.40932 3.47711 3.76377 3.85902 3.93863 3.97198 4.05848 4.11595 4.14099 4.25542 4.35348 4.50172 4.56390 4.61740 4.70239 4.79531 4.83022 4.90067 4.91405 4.92774 5.01706 5.10179 5.14780 5.18457 5.23806 5.29819 5.30756 5.35863 5.46215 5.59202 5.64609 6.14880 6.35985 6.52534 6.79037 7.44472 8.19559 8.43479 9.36762 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003515 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.678713 B = 7964.782104 C = 8930.424531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 C -0.139 4.139 4 C 0.101 3.899 5 N -0.256 5.256 6 N -0.285 5.285 7 S 0.476 5.524 8 C -0.305 4.305 9 C 0.603 3.397 10 O -0.545 6.545 11 N -0.588 5.588 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.173 3.827 15 H 0.051 0.949 16 N -0.723 5.723 17 C -0.227 4.227 18 H 0.075 0.925 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.959 3.041 22 H -0.280 1.280 23 H -0.303 1.303 24 H -0.284 1.284 25 C -0.098 4.098 26 H 0.089 0.911 27 C -0.131 4.131 28 C 0.125 3.875 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.375 0.625 41 H 0.247 0.753 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.713 14.594 -3.396 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.043 4.043 3 C -0.196 4.196 4 C -0.046 4.046 5 N -0.121 5.121 6 N -0.265 5.265 7 S 0.613 5.387 8 C -0.446 4.446 9 C 0.389 3.611 10 O -0.424 6.424 11 N -0.319 5.319 12 C -0.011 4.011 13 C -0.183 4.183 14 C 0.064 3.936 15 H 0.069 0.931 16 N -0.365 5.365 17 C -0.359 4.359 18 H 0.093 0.907 19 C -0.260 4.260 20 N -0.617 5.617 21 Si 0.790 3.210 22 H -0.207 1.207 23 H -0.230 1.230 24 H -0.211 1.211 25 C -0.118 4.118 26 H 0.107 0.893 27 C -0.189 4.189 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.209 0.791 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.890 14.520 -1.814 18.241 hybrid contribution 0.687 -0.912 -0.450 1.228 sum -10.203 13.608 -2.264 17.158 Atomic orbital electron populations 1.21766 0.91931 1.02020 1.03650 1.20027 0.97741 0.96466 0.90029 1.21819 1.00877 0.93157 1.03770 1.23168 0.93957 0.92768 0.94736 1.70580 1.20250 1.25187 0.96106 1.78660 1.14340 1.08523 1.24931 1.82909 1.36531 1.26504 0.92727 1.27706 1.11019 1.04869 1.00956 1.16569 0.81429 0.78230 0.84876 1.90776 1.58196 1.60526 1.32907 1.47970 1.13229 1.48987 1.21716 1.21894 0.90544 1.01546 0.87125 1.22416 0.95539 0.99219 1.01077 1.20443 0.96257 0.85774 0.91112 0.93072 1.42569 1.19935 1.10671 1.63303 1.19501 0.96122 0.96324 1.23985 0.90747 1.25305 1.00432 0.96845 1.03450 1.69772 1.35205 1.05012 1.51662 0.85433 0.80516 0.76193 0.78900 1.20671 1.23027 1.21060 1.21652 0.93682 1.00395 0.96095 0.89305 1.21597 1.00731 0.99127 0.97480 1.21686 0.96139 0.93100 0.88762 0.91817 0.89322 0.93557 0.88593 0.93057 0.89321 0.91786 0.90927 0.90519 0.90727 0.91000 0.79102 0.94387 0.91457 0.92232 0.93987 0.92026 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.16 71.98 0.66 -1.78 16 2 C -0.02 -0.43 3.23 -11.54 -0.04 -0.46 16 3 C -0.14 -2.31 9.16 71.98 0.66 -1.65 16 4 C 0.10 2.55 5.53 42.65 0.24 2.78 16 5 N -0.26 -6.79 11.51 -48.18 -0.55 -7.34 16 6 N -0.28 -7.51 12.51 37.02 0.46 -7.04 16 7 S 0.48 11.26 20.68 -56.49 -1.17 10.09 16 8 C -0.30 -8.05 5.80 24.62 0.14 -7.91 16 9 C 0.60 17.74 7.41 86.59 0.64 18.38 16 10 O -0.54 -18.02 14.96 -4.11 -0.06 -18.09 16 11 N -0.59 -17.06 2.97 -823.08 -2.45 -19.51 16 12 C 0.11 3.22 5.51 86.36 0.48 3.69 16 13 C -0.14 -4.11 5.78 30.67 0.18 -3.93 16 14 C 0.17 5.75 2.53 45.04 0.11 5.86 16 15 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 16 N -0.72 -31.09 3.64 -322.70 -1.17 -32.27 16 17 C -0.23 -11.22 9.93 84.03 0.83 -10.38 16 18 H 0.07 3.55 7.83 -2.91 -0.02 3.52 16 19 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 20 N -0.97 -54.91 13.06 21.65 0.28 -54.63 16 21 Si 0.96 43.58 29.55 68.60 2.03 45.60 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.10 -2.79 2.67 -10.70 -0.03 -2.82 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 27 C -0.13 -3.72 9.05 71.98 0.65 -3.07 16 28 C 0.12 3.73 5.43 86.37 0.47 4.20 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 2.23 6.31 -2.39 -0.02 2.22 16 33 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 2.47 7.74 -2.39 -0.02 2.45 16 37 H 0.08 1.91 4.40 -12.22 -0.05 1.86 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.38 17.58 5.93 -92.71 -0.55 17.03 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 45 H 0.06 2.11 6.64 -2.39 -0.02 2.09 16 46 H 0.09 2.75 7.00 -2.38 -0.02 2.73 16 Total: -1.00 -59.83 376.21 3.24 -56.59 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.41 Total: 26.79 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.46 Total: -0.20 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -3.43 Total: -120.79 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 11.26 SS G_CDS: -1.17 Total: 10.09 kcal Total: -59.83 3.24 -56.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036237399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.815 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds