Wall clock time and date at job start Tue Mar 31 2020 21:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34778 * 125.64881 * 204.16728 * 5 4 2 7 7 O 1.21290 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47048 * 179.97438 * 8 6 5 10 10 C 1.38234 * 120.00249 * 269.72904 * 9 8 6 11 11 C 1.38234 * 119.99927 * 179.78929 * 10 9 8 12 12 C 1.38236 * 120.00249 * 0.46306 * 11 10 9 13 13 C 1.50693 * 119.99940 * 179.79215 * 12 11 10 14 14 F 1.39899 * 109.47500 * 29.97638 * 13 12 11 15 15 F 1.39901 * 109.47230 * 149.97716 * 13 12 11 16 16 C 1.38238 * 119.99800 * 359.76198 * 12 11 10 17 17 C 1.38236 * 119.99707 * 89.99885 * 9 8 6 18 18 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 19 19 C 1.54332 * 107.27026 * 358.94225 * 18 5 4 20 20 H 1.09001 * 110.71417 * 96.34429 * 19 18 5 21 21 N 1.46499 * 110.72184 * 219.44253 * 19 18 5 22 22 C 1.36935 * 119.99938 * 273.54809 * 21 19 18 23 23 H 1.07999 * 120.00083 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99632 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99535 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 0.27829 * 24 22 21 27 27 H 1.48501 * 109.46922 * 269.71949 * 26 24 22 28 28 H 1.48496 * 109.47354 * 29.72145 * 26 24 22 29 29 H 1.48501 * 109.47428 * 149.72253 * 26 24 22 30 30 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 31 31 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 32 32 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 33 33 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 34 34 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 35 35 H 1.08996 * 109.46778 * 299.99650 * 8 6 5 36 36 H 1.09001 * 109.47033 * 59.99784 * 8 6 5 37 37 H 1.08005 * 119.99755 * 359.97438 * 10 9 8 38 38 H 1.08002 * 119.99754 * 180.24413 * 11 10 9 39 39 H 1.09006 * 109.47050 * 269.97138 * 13 12 11 40 40 H 1.07997 * 120.00035 * 180.02562 * 16 12 11 41 41 H 1.08001 * 120.00337 * 359.97438 * 17 9 8 42 42 H 1.09002 * 109.88548 * 239.53190 * 18 5 4 43 43 H 1.08995 * 110.01292 * 118.42889 * 18 5 4 44 44 H 0.97004 * 119.99469 * 93.54877 * 21 19 18 45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4980 -2.7962 8 6 5.7719 -1.9922 -1.0174 9 6 6.7352 -2.2877 -2.1380 10 6 6.8152 -3.5643 -2.6621 11 6 7.6958 -3.8344 -3.6930 12 6 8.5032 -2.8300 -4.1933 13 6 9.4664 -3.1256 -5.3138 14 9 8.9505 -4.1504 -6.1143 15 9 9.6475 -1.9750 -6.0888 16 6 8.4266 -1.5545 -3.6660 17 6 7.5429 -1.2834 -2.6380 18 6 3.4675 -1.2741 0.6961 19 6 2.0861 -0.8078 1.2024 20 1 1.4479 -1.6632 1.4240 21 7 2.2286 0.0497 2.3816 22 6 2.3033 -0.5091 3.6295 23 1 2.2576 -1.5820 3.7443 24 6 2.4388 0.3034 4.7468 25 7 2.5101 -0.2337 5.9463 26 14 2.5114 2.1594 4.5486 27 1 3.9245 2.5846 4.3829 28 1 1.7301 2.5604 3.3512 29 1 1.9373 2.8089 5.7544 30 1 -0.3634 0.4521 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 2.1560 -0.1720 -2.0837 34 1 1.4525 -1.6704 -1.4042 35 1 6.1740 -1.1943 -0.3931 36 1 5.6303 -2.8891 -0.4144 37 1 6.1876 -4.3501 -2.2682 38 1 7.7554 -4.8309 -4.1051 39 1 10.4242 -3.4372 -4.8970 40 1 9.0571 -0.7697 -4.0571 41 1 7.4832 -0.2869 -2.2259 42 1 4.2426 -0.5996 1.0601 43 1 3.6662 -2.2882 1.0425 44 1 2.2699 1.0133 2.2783 45 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054896017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:11 Heat of formation + Delta-G solvation = -99.747371 kcal Electronic energy + Delta-G solvation = -28492.238931 eV Core-core repulsion = 24145.342170 eV Total energy + Delta-G solvation = -4346.896761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.29177 -47.31121 -40.29277 -39.30031 -37.64930 -34.26359 -33.62856 -32.58088 -31.22356 -31.13019 -29.34308 -27.96670 -26.52406 -24.91978 -23.82001 -23.04063 -21.71635 -21.13856 -20.26046 -19.10631 -17.89402 -17.75338 -17.64656 -17.47808 -16.94128 -16.31923 -15.76312 -15.36473 -15.04025 -14.69537 -14.62226 -14.31760 -14.11848 -13.86418 -13.51007 -13.50922 -13.39059 -13.29954 -13.25952 -12.75579 -12.70307 -12.55468 -12.27985 -12.17752 -12.02122 -11.76379 -11.51936 -11.28567 -11.22031 -11.12713 -10.86807 -10.71848 -10.41330 -10.11592 -9.87559 -9.71643 -9.18167 -9.11630 -8.99385 -8.46536 -7.47749 -5.91463 -3.29816 0.85052 1.15144 2.70244 3.01979 3.27198 3.30068 3.36369 3.39714 3.51705 3.86988 4.25060 4.45703 4.49637 4.55367 4.59317 4.65748 4.73386 4.95234 4.95974 5.00461 5.11919 5.15166 5.35877 5.37864 5.40435 5.44282 5.60354 5.61783 5.64871 5.70686 5.77500 5.80703 6.01548 6.03251 6.06161 6.10527 6.21652 6.28319 6.33549 6.39320 6.43155 6.64718 6.68045 7.65186 7.82448 8.24193 8.27170 9.03446 9.75779 9.93783 11.26042 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.002220 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.838996 B =12612.067762 C =13264.527402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.614 5.614 6 C 0.529 3.471 7 O -0.545 6.545 8 C -0.104 4.104 9 C -0.039 4.039 10 C -0.106 4.106 11 C -0.085 4.085 12 C -0.176 4.176 13 C 0.315 3.685 14 F -0.201 7.201 15 F -0.201 7.201 16 C -0.085 4.085 17 C -0.106 4.106 18 C 0.072 3.928 19 C 0.182 3.818 20 H 0.075 0.925 21 N -0.736 5.736 22 C -0.254 4.254 23 H 0.092 0.908 24 C 0.011 3.989 25 N -0.928 5.928 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.276 1.276 29 H -0.290 1.290 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -5.055 -18.647 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.317 3.683 7 O -0.423 6.423 8 C -0.144 4.144 9 C -0.039 4.039 10 C -0.124 4.124 11 C -0.103 4.103 12 C -0.177 4.177 13 C 0.261 3.739 14 F -0.182 7.182 15 F -0.182 7.182 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.054 4.054 19 C 0.071 3.929 20 H 0.093 0.907 21 N -0.378 5.378 22 C -0.383 4.383 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.575 5.575 26 Si 0.713 3.287 27 H -0.210 1.210 28 H -0.202 1.202 29 H -0.216 1.216 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.291 -5.194 -19.122 22.328 hybrid contribution 0.083 1.371 0.055 1.374 sum 10.374 -3.824 -19.067 22.041 Atomic orbital electron populations 1.21625 0.93650 1.01934 1.02078 1.22658 0.96559 0.99621 0.94832 0.90059 1.22243 0.82837 0.98160 0.97566 1.48547 1.12032 1.66167 1.08078 1.20060 0.84590 0.77432 0.86186 1.90714 1.83170 1.53887 1.14527 1.20719 0.92005 1.04577 0.97096 1.19502 0.94907 0.93668 0.95865 1.20991 0.98358 0.96554 0.96514 1.20841 0.94752 0.98858 0.95882 1.20356 1.01370 0.96160 0.99843 1.20304 0.97134 0.73724 0.82691 1.92993 1.89248 1.59740 1.76208 1.92995 1.96338 1.51320 1.77538 1.20846 0.98428 0.95288 0.95761 1.21001 0.95692 0.99059 0.96646 1.23275 1.02960 1.01757 0.77417 1.21214 0.91892 0.93823 0.86007 0.90707 1.42714 1.88697 1.04053 1.02312 1.19049 1.43611 0.93976 0.81684 0.88980 1.24681 1.01419 0.97399 0.95115 1.69698 1.56067 1.34357 0.97341 0.86590 0.77912 0.87135 0.77101 1.21006 1.20208 1.21614 0.91436 0.93026 0.92474 0.90916 0.91460 0.87503 0.87534 0.85396 0.85172 0.86201 0.85182 0.85410 0.90781 0.91651 0.80238 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.12 -1.63 3.25 -88.48 -0.29 -1.92 16 3 H 0.08 1.18 8.00 -51.92 -0.42 0.76 16 4 C 0.11 1.55 6.37 -2.53 -0.02 1.54 16 5 N -0.61 -8.79 3.33 -170.52 -0.57 -9.35 16 6 C 0.53 7.70 7.84 -10.98 -0.09 7.62 16 7 O -0.55 -9.68 16.29 5.55 0.09 -9.59 16 8 C -0.10 -1.18 5.02 -29.03 -0.15 -1.32 16 9 C -0.04 -0.45 4.37 -104.62 -0.46 -0.91 16 10 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 11 C -0.09 -0.85 9.40 -39.58 -0.37 -1.22 16 12 C -0.18 -1.75 5.73 -104.63 -0.60 -2.35 16 13 C 0.31 2.62 5.65 36.00 0.20 2.82 16 14 F -0.20 -2.00 16.48 2.25 0.04 -1.96 16 15 F -0.20 -2.01 16.48 2.25 0.04 -1.97 16 16 C -0.09 -0.86 9.40 -39.58 -0.37 -1.24 16 17 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 18 C 0.07 1.07 6.24 -3.06 -0.02 1.06 16 19 C 0.18 3.04 3.06 -66.09 -0.20 2.83 16 20 H 0.08 1.29 8.02 -51.93 -0.42 0.87 16 21 N -0.74 -15.41 4.98 -51.65 -0.26 -15.67 16 22 C -0.25 -6.48 10.46 -15.06 -0.16 -6.64 16 23 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 24 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 25 N -0.93 -27.49 13.97 55.49 0.78 -26.72 16 26 Si 0.88 20.67 27.74 -169.99 -4.71 15.95 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 35 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.13 1.07 7.60 -52.49 -0.40 0.67 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.13 1.10 7.60 -52.49 -0.40 0.70 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.36 7.61 5.57 -40.82 -0.23 7.38 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -31.88 381.17 -8.38 -40.26 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.49 Total: 7.27 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.03 Total: -3.96 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.05 Total: -51.74 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.71 Total: 15.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.88 -8.38 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.490 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds