Wall clock time and date at job start Tue Mar 31 2020 21:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34774 * 125.64502 * 178.97339 * 5 4 2 7 7 O 1.21277 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99924 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47291 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.99558 * 269.72677 * 9 8 6 11 11 C 1.38241 * 119.99757 * 179.78741 * 10 9 8 12 12 C 1.38234 * 120.00012 * 0.46509 * 11 10 9 13 13 C 1.50700 * 120.00339 * 179.79156 * 12 11 10 14 14 F 1.39897 * 109.47314 * 119.97507 * 13 12 11 15 15 F 1.39893 * 109.46960 * 239.98060 * 13 12 11 16 16 C 1.38240 * 119.99949 * 359.76723 * 12 11 10 17 17 C 1.38228 * 120.00440 * 89.99932 * 9 8 6 18 18 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 19 19 C 1.54904 * 104.83620 * 24.13268 * 18 5 4 20 20 H 1.08995 * 111.00703 * 204.91484 * 19 18 5 21 21 N 1.46498 * 111.00757 * 81.05810 * 19 18 5 22 22 C 1.36946 * 119.99888 * 92.80841 * 21 19 18 23 23 H 1.08000 * 119.99550 * 359.97438 * 22 21 19 24 24 C 1.38804 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00717 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99700 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47247 * 59.99712 * 26 24 22 28 28 H 1.48503 * 109.47032 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46910 * 299.99532 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08997 * 109.87962 * 100.02687 * 4 2 1 35 35 H 1.09000 * 109.47450 * 300.00712 * 8 6 5 36 36 H 1.09002 * 109.47193 * 60.00061 * 8 6 5 37 37 H 1.08004 * 120.00722 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.99922 * 180.25635 * 11 10 9 39 39 H 1.09004 * 109.46798 * 359.97356 * 13 12 11 40 40 H 1.07998 * 119.99973 * 180.02562 * 16 12 11 41 41 H 1.08005 * 119.99918 * 359.97438 * 17 9 8 42 42 H 1.09007 * 110.36440 * 142.96663 * 18 5 4 43 43 H 1.08998 * 110.37175 * 265.28632 * 18 5 4 44 44 H 0.96995 * 120.00220 * 272.80757 * 21 19 18 45 45 H 0.96996 * 120.00457 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7197 -2.5514 -2.6630 8 6 5.1679 -3.0986 -0.8817 9 6 5.8305 -3.9591 -1.9264 10 6 5.4247 -5.2688 -2.1019 11 6 6.0295 -6.0569 -3.0633 12 6 7.0466 -5.5381 -3.8425 13 6 7.7092 -6.3986 -4.8873 14 9 7.5389 -5.8160 -6.1478 15 9 9.0749 -6.5072 -4.6043 16 6 7.4557 -4.2298 -3.6637 17 6 6.8478 -3.4405 -2.7053 18 6 3.4633 -1.2508 0.6855 19 6 2.0790 -0.7974 1.2125 20 1 2.1850 -0.1552 2.0868 21 7 1.2271 -1.9512 1.5112 22 6 1.2021 -2.4745 2.7765 23 1 1.8107 -2.0368 3.5540 24 6 0.3954 -3.5681 3.0594 25 7 -0.3459 -4.1018 2.1118 26 14 0.3617 -4.2823 4.7852 27 1 -0.0945 -3.2428 5.7424 28 1 -0.5727 -5.4358 4.8254 29 1 1.7253 -4.7360 5.1598 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3741 -0.0991 -1.9978 35 1 5.8840 -2.3679 -0.5057 36 1 4.8230 -3.7256 -0.0594 37 1 4.6325 -5.6754 -1.4906 38 1 5.7096 -7.0789 -3.2032 39 1 7.2569 -7.3904 -4.8813 40 1 8.2501 -3.8244 -4.2728 41 1 7.1676 -2.4184 -2.5655 42 1 3.7960 -2.1446 1.2135 43 1 4.1932 -0.4491 0.7978 44 1 0.6809 -2.3445 0.8129 45 1 -0.9094 -4.8662 2.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054896019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:19 Heat of formation + Delta-G solvation = -100.632538 kcal Electronic energy + Delta-G solvation = -28917.323332 eV Core-core repulsion = 24570.388188 eV Total energy + Delta-G solvation = -4346.935145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.16824 -47.15525 -40.13417 -39.18620 -37.50804 -33.92056 -33.50055 -32.38466 -31.14695 -30.55972 -29.18613 -27.80285 -26.29127 -24.71818 -23.89675 -23.00399 -22.13474 -21.21554 -19.28782 -18.97220 -17.70459 -17.55251 -17.52124 -17.38502 -16.66587 -16.06798 -15.68409 -15.21384 -14.88222 -14.59900 -14.39167 -14.20854 -14.10334 -13.76511 -13.57128 -13.53490 -13.12212 -13.02719 -12.94085 -12.89354 -12.55750 -12.16824 -12.09957 -11.90600 -11.81106 -11.55929 -11.17414 -11.15504 -11.03554 -10.96071 -10.76641 -10.48750 -10.34884 -10.02864 -9.72634 -9.64862 -9.10181 -9.06766 -8.91712 -8.26268 -7.09889 -5.88765 -3.19206 0.95947 1.26872 2.92411 3.23246 3.35345 3.40539 3.41985 3.52388 3.63521 3.96293 4.33136 4.47346 4.62988 4.75263 4.76253 4.81223 4.86090 5.11973 5.16396 5.21794 5.26267 5.30875 5.48510 5.50622 5.51782 5.57567 5.71974 5.73836 5.88444 5.90694 5.94769 6.13334 6.14479 6.18050 6.20366 6.30725 6.33581 6.45029 6.47871 6.58183 6.71765 6.77046 6.91480 7.57559 7.88265 8.28694 8.46854 9.40551 9.95699 10.30333 11.32923 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002623 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.194253 B =10671.547440 C =11943.128946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.603 5.603 6 C 0.531 3.469 7 O -0.547 6.547 8 C -0.104 4.104 9 C -0.034 4.034 10 C -0.105 4.105 11 C -0.083 4.083 12 C -0.178 4.178 13 C 0.314 3.686 14 F -0.201 7.201 15 F -0.202 7.202 16 C -0.080 4.080 17 C -0.108 4.108 18 C 0.066 3.934 19 C 0.171 3.829 20 H 0.075 0.925 21 N -0.708 5.708 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.964 1.567 -8.848 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.319 3.681 7 O -0.425 6.425 8 C -0.143 4.143 9 C -0.034 4.034 10 C -0.123 4.123 11 C -0.101 4.101 12 C -0.179 4.179 13 C 0.261 3.739 14 F -0.182 7.182 15 F -0.184 7.184 16 C -0.098 4.098 17 C -0.126 4.126 18 C -0.060 4.060 19 C 0.059 3.941 20 H 0.092 0.908 21 N -0.348 5.348 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.223 0.777 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.867 1.360 -9.353 16.782 hybrid contribution -0.131 -0.531 0.713 0.899 sum 13.737 0.829 -8.640 16.249 Atomic orbital electron populations 1.21614 0.93478 1.03420 1.00513 1.22540 0.97159 0.98488 0.95336 0.90345 1.21937 0.87779 0.94311 0.96515 1.48338 1.29491 1.43929 1.11844 1.19939 0.83403 0.78801 0.85944 1.90698 1.71349 1.63998 1.16494 1.20712 0.96339 0.99290 0.97995 1.19514 0.94462 0.93859 0.95605 1.21069 0.99426 0.93576 0.98264 1.20867 0.94611 0.99958 0.94712 1.20253 1.00955 0.96228 1.00432 1.20392 0.77935 0.97059 0.78560 1.93013 1.95201 1.86932 1.43070 1.93001 1.34703 1.97092 1.93565 1.20855 0.98977 0.92769 0.97206 1.20963 0.96391 0.99675 0.95620 1.23456 1.01341 1.00747 0.80453 1.21344 0.88466 0.89926 0.94404 0.90761 1.42371 1.49564 1.32600 1.10314 1.19185 1.21452 1.09915 0.87421 0.91036 1.24753 0.99336 0.98724 0.97600 1.69648 1.30525 1.25565 1.31785 0.86287 0.77306 0.78520 0.84124 1.21191 1.21713 1.21217 0.90961 0.93792 0.92325 0.91524 0.92448 0.88007 0.87234 0.85046 0.85273 0.86578 0.85673 0.85586 0.90159 0.92538 0.77741 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.80 37.16 0.33 -1.72 16 2 C -0.12 -1.71 3.42 -88.78 -0.30 -2.01 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.88 6.46 -3.06 -0.02 1.86 16 5 N -0.60 -9.84 3.33 -170.52 -0.57 -10.41 16 6 C 0.53 8.93 7.84 -10.99 -0.09 8.84 16 7 O -0.55 -11.02 16.36 5.56 0.09 -10.93 16 8 C -0.10 -1.36 4.84 -29.04 -0.14 -1.50 16 9 C -0.03 -0.45 4.37 -104.63 -0.46 -0.91 16 10 C -0.11 -1.35 9.70 -39.58 -0.38 -1.74 16 11 C -0.08 -0.93 9.67 -39.58 -0.38 -1.31 16 12 C -0.18 -2.02 5.37 -104.62 -0.56 -2.58 16 13 C 0.31 3.04 5.45 36.01 0.20 3.24 16 14 F -0.20 -2.33 17.26 2.25 0.04 -2.29 16 15 F -0.20 -2.20 17.26 2.25 0.04 -2.16 16 16 C -0.08 -0.95 9.60 -39.58 -0.38 -1.32 16 17 C -0.11 -1.32 9.70 -39.59 -0.38 -1.71 16 18 C 0.07 1.01 6.38 -2.53 -0.02 0.99 16 19 C 0.17 2.95 3.47 -65.78 -0.23 2.72 16 20 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 21 N -0.71 -15.83 4.56 -51.35 -0.23 -16.06 16 22 C -0.25 -6.26 9.96 -15.06 -0.15 -6.41 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 26 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.20 7.82 -51.93 -0.41 0.79 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.11 1.41 7.79 -51.93 -0.40 1.01 16 37 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.13 1.06 7.95 -52.48 -0.42 0.64 16 39 H 0.12 0.73 7.88 -51.93 -0.41 0.32 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.54 6.32 -40.82 -0.26 9.28 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -31.37 382.01 -8.62 -39.99 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.38 Total: 9.69 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.07 Total: -3.85 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.08 Total: -52.28 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.37 -8.62 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.639 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds