Wall clock time and date at job start Tue Mar 31 2020 21:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34774 * 125.64502 * 178.97339 * 5 4 2 7 7 O 1.21277 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99924 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.47291 * 180.02562 * 8 6 5 10 10 C 1.38234 * 119.99558 * 269.72677 * 9 8 6 11 11 C 1.38241 * 119.99757 * 179.78741 * 10 9 8 12 12 C 1.38234 * 120.00012 * 0.46509 * 11 10 9 13 13 C 1.50700 * 120.00339 * 179.79156 * 12 11 10 14 14 F 1.39897 * 109.47314 * 119.97507 * 13 12 11 15 15 F 1.39893 * 109.46960 * 239.98060 * 13 12 11 16 16 C 1.38240 * 119.99949 * 359.76723 * 12 11 10 17 17 C 1.38228 * 120.00440 * 89.99932 * 9 8 6 18 18 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 19 19 C 1.54904 * 104.83620 * 24.13268 * 18 5 4 20 20 H 1.08995 * 111.00703 * 204.91484 * 19 18 5 21 21 N 1.46498 * 111.00757 * 81.05810 * 19 18 5 22 22 C 1.36946 * 119.99888 * 92.80841 * 21 19 18 23 23 H 1.08000 * 119.99550 * 359.97438 * 22 21 19 24 24 C 1.38804 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31618 * 120.00717 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99700 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47247 * 59.99712 * 26 24 22 28 28 H 1.48503 * 109.47032 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46910 * 299.99532 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08997 * 109.87962 * 100.02687 * 4 2 1 35 35 H 1.09000 * 109.47450 * 300.00712 * 8 6 5 36 36 H 1.09002 * 109.47193 * 60.00061 * 8 6 5 37 37 H 1.08004 * 120.00722 * 0.02562 * 10 9 8 38 38 H 1.08005 * 119.99922 * 180.25635 * 11 10 9 39 39 H 1.09004 * 109.46798 * 359.97356 * 13 12 11 40 40 H 1.07998 * 119.99973 * 180.02562 * 16 12 11 41 41 H 1.08005 * 119.99918 * 359.97438 * 17 9 8 42 42 H 1.09007 * 110.36440 * 142.96663 * 18 5 4 43 43 H 1.08998 * 110.37175 * 265.28632 * 18 5 4 44 44 H 0.96995 * 120.00220 * 272.80757 * 21 19 18 45 45 H 0.96996 * 120.00457 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7197 -2.5514 -2.6630 8 6 5.1679 -3.0986 -0.8817 9 6 5.8305 -3.9591 -1.9264 10 6 5.4247 -5.2688 -2.1019 11 6 6.0295 -6.0569 -3.0633 12 6 7.0466 -5.5381 -3.8425 13 6 7.7092 -6.3986 -4.8873 14 9 7.5389 -5.8160 -6.1478 15 9 9.0749 -6.5072 -4.6043 16 6 7.4557 -4.2298 -3.6637 17 6 6.8478 -3.4405 -2.7053 18 6 3.4633 -1.2508 0.6855 19 6 2.0790 -0.7974 1.2125 20 1 2.1850 -0.1552 2.0868 21 7 1.2271 -1.9512 1.5112 22 6 1.2021 -2.4745 2.7765 23 1 1.8107 -2.0368 3.5540 24 6 0.3954 -3.5681 3.0594 25 7 -0.3459 -4.1018 2.1118 26 14 0.3617 -4.2823 4.7852 27 1 -0.0945 -3.2428 5.7424 28 1 -0.5727 -5.4358 4.8254 29 1 1.7253 -4.7360 5.1598 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3741 -0.0991 -1.9978 35 1 5.8840 -2.3679 -0.5057 36 1 4.8230 -3.7256 -0.0594 37 1 4.6325 -5.6754 -1.4906 38 1 5.7096 -7.0789 -3.2032 39 1 7.2569 -7.3904 -4.8813 40 1 8.2501 -3.8244 -4.2728 41 1 7.1676 -2.4184 -2.5655 42 1 3.7960 -2.1446 1.2135 43 1 4.1932 -0.4491 0.7978 44 1 0.6809 -2.3445 0.8129 45 1 -0.9094 -4.8662 2.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054896019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:18 Heat of formation + Delta-G solvation = -117.743745 kcal Electronic energy + Delta-G solvation = -28918.065330 eV Core-core repulsion = 24570.388188 eV Total energy + Delta-G solvation = -4347.677142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.97533 -47.97421 -41.32896 -40.23247 -38.84773 -35.63308 -34.52590 -33.78534 -32.23793 -32.03406 -30.18881 -29.30177 -27.43251 -25.80572 -25.62244 -23.89743 -23.44857 -22.18130 -20.63659 -20.22705 -19.33596 -18.52002 -18.32175 -18.19527 -17.99065 -17.39490 -16.80065 -16.48879 -16.08929 -15.96928 -15.59665 -15.42100 -15.22715 -14.93636 -14.67198 -14.45983 -14.42598 -14.36293 -14.08568 -13.83292 -13.65156 -13.48397 -13.30039 -13.04545 -12.94644 -12.85648 -12.79561 -12.73013 -12.25117 -12.17658 -12.07138 -11.94258 -11.82557 -11.46955 -11.35678 -11.03823 -10.88911 -9.96854 -9.88200 -9.63558 -8.92618 -7.89727 -5.17675 0.04055 0.36267 1.51392 1.52562 1.58474 1.63080 2.06994 2.59385 2.64425 2.75438 3.25037 3.41750 3.52100 3.57093 3.66214 3.88338 3.93229 3.95361 3.98598 4.00424 4.08763 4.14516 4.32509 4.37120 4.44692 4.53280 4.61176 4.66355 4.68610 4.80915 4.83188 4.88359 4.99807 5.00484 5.02117 5.21353 5.24201 5.28223 5.31497 5.43351 5.53008 5.56015 5.62348 5.87024 6.31010 6.60106 7.17124 7.38448 8.14306 8.36205 9.33325 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013634 B = 0.002623 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.194253 B =10671.547440 C =11943.128946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.117 0.883 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.523 3.477 7 O -0.587 6.587 8 C -0.094 4.094 9 C -0.052 4.052 10 C -0.127 4.127 11 C -0.083 4.083 12 C -0.185 4.185 13 C 0.313 3.687 14 F -0.213 7.213 15 F -0.209 7.209 16 C -0.092 4.092 17 C -0.116 4.116 18 C 0.076 3.924 19 C 0.158 3.842 20 H 0.089 0.911 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.085 0.915 24 C -0.074 4.074 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.279 1.279 28 H -0.306 1.306 29 H -0.277 1.277 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.929 2.799 -8.360 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.135 0.865 4 C -0.007 4.007 5 N -0.339 5.339 6 C 0.313 3.687 7 O -0.469 6.469 8 C -0.134 4.134 9 C -0.053 4.053 10 C -0.145 4.145 11 C -0.101 4.101 12 C -0.186 4.186 13 C 0.260 3.740 14 F -0.194 7.194 15 F -0.191 7.191 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.049 4.049 19 C 0.047 3.953 20 H 0.107 0.893 21 N -0.360 5.360 22 C -0.364 4.364 23 H 0.103 0.897 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.205 1.205 28 H -0.233 1.233 29 H -0.203 1.203 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.205 0.795 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.886 2.652 -8.833 18.369 hybrid contribution -0.711 -0.817 0.505 1.195 sum 15.174 1.835 -8.328 17.407 Atomic orbital electron populations 1.21538 0.94220 1.01120 1.01677 1.22518 0.96442 0.99768 0.93242 0.86465 1.21954 0.87210 0.94025 0.97529 1.48480 1.29291 1.43782 1.12306 1.20606 0.84058 0.78418 0.85574 1.90670 1.72615 1.65230 1.18352 1.20695 0.95413 0.99584 0.97660 1.19647 0.95159 0.94161 0.96288 1.21246 0.99929 0.94133 0.99200 1.21174 0.94029 1.01154 0.93742 1.20540 1.00919 0.96426 1.00710 1.20729 0.77540 0.98363 0.77347 1.92988 1.95235 1.87363 1.43855 1.92985 1.35404 1.97129 1.93561 1.21133 0.99324 0.93268 0.97301 1.21174 0.96177 1.00521 0.95498 1.23379 1.00629 1.01592 0.79347 1.21683 0.88807 0.88709 0.96064 0.89327 1.42543 1.50426 1.33961 1.09046 1.19633 1.19444 1.08673 0.88644 0.89698 1.25475 1.00329 1.00147 1.00707 1.69821 1.32367 1.26340 1.33632 0.85313 0.77124 0.77342 0.80560 1.20477 1.23254 1.20303 0.94870 0.91582 0.92233 0.94621 0.91030 0.85042 0.87351 0.85527 0.82402 0.82617 0.84619 0.84052 0.91200 0.88332 0.79518 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.80 71.98 0.63 -3.21 16 2 C -0.10 -2.74 3.42 -9.60 -0.03 -2.77 16 3 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.12 3.59 6.46 86.73 0.56 4.15 16 5 N -0.61 -19.01 3.33 -811.81 -2.70 -21.71 16 6 C 0.52 17.34 7.84 87.66 0.69 18.03 16 7 O -0.59 -23.93 16.36 -3.02 -0.05 -23.97 16 8 C -0.09 -2.37 4.84 29.10 0.14 -2.23 16 9 C -0.05 -1.35 4.37 -19.87 -0.09 -1.43 16 10 C -0.13 -3.24 9.70 22.27 0.22 -3.03 16 11 C -0.08 -1.75 9.67 22.27 0.22 -1.54 16 12 C -0.19 -3.95 5.37 -19.86 -0.11 -4.06 16 13 C 0.31 5.47 5.45 71.24 0.39 5.86 16 14 F -0.21 -4.65 17.26 44.97 0.78 -3.87 16 15 F -0.21 -4.21 17.26 44.97 0.78 -3.44 16 16 C -0.09 -2.09 9.60 22.27 0.21 -1.87 16 17 C -0.12 -2.71 9.70 22.27 0.22 -2.50 16 18 C 0.08 2.09 6.38 86.85 0.55 2.65 16 19 C 0.16 5.09 3.47 46.38 0.16 5.25 16 20 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 21 N -0.72 -32.12 4.56 -316.38 -1.44 -33.57 16 22 C -0.23 -11.55 9.96 84.03 0.84 -10.71 16 23 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 25 N -0.97 -57.40 13.06 21.65 0.28 -57.12 16 26 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 30 H 0.03 1.26 6.34 -2.39 -0.02 1.24 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.04 1.32 7.82 -2.39 -0.02 1.30 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.13 2.43 8.08 -2.39 -0.02 2.41 16 36 H 0.11 2.74 7.79 -2.39 -0.02 2.72 16 37 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.16 2.25 7.95 -2.91 -0.02 2.23 16 39 H 0.16 1.49 7.88 -2.38 -0.02 1.47 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.07 2.12 7.48 -2.38 -0.02 2.10 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.37 18.89 6.32 -92.71 -0.59 18.30 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -70.16 382.01 5.16 -65.00 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.42 Total: 33.88 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.06 Total: -0.97 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.86 Total: -112.40 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 1.55 Total: -7.31 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.16 5.16 -65.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.745 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds