Wall clock time and date at job start Tue Mar 31 2020 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50827 * 2 1 4 4 C 1.53272 * 109.51337 * 120.10286 * 2 1 3 5 5 N 1.47169 * 108.55673 * 172.95079 * 4 2 1 6 6 C 1.34784 * 121.07519 * 128.77149 * 5 4 2 7 7 O 1.21737 * 119.99332 * 177.45180 * 6 5 4 8 8 C 1.46370 * 120.00222 * 357.45340 * 6 5 4 9 9 C 1.33971 * 119.23400 * 46.78318 * 8 6 5 10 10 O 1.35002 * 121.68902 * 180.39308 * 9 8 6 11 11 C 1.43244 * 116.76490 * 342.79668 * 10 9 8 12 12 C 1.53552 * 108.08913 * 45.48830 * 11 10 9 13 13 O 1.36222 * 119.23256 * 226.51715 * 8 6 5 14 14 C 1.47326 * 117.84252 * 308.74646 * 5 4 2 15 15 C 1.52362 * 108.42602 * 49.16181 * 14 5 4 16 16 C 1.54376 * 110.38983 * 73.48750 * 15 14 5 17 17 C 1.54475 * 102.94989 * 152.19638 * 16 15 14 18 18 N 1.47083 * 107.29331 * 338.85880 * 17 16 15 19 19 C 1.36927 * 125.63019 * 178.89230 * 18 17 16 20 20 H 1.07998 * 120.00300 * 179.69147 * 19 18 17 21 21 C 1.38814 * 120.00131 * 359.69650 * 19 18 17 22 22 N 1.31618 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47279 * 270.00065 * 23 21 19 25 25 H 1.48509 * 109.46862 * 29.99911 * 23 21 19 26 26 H 1.48497 * 109.47197 * 149.99680 * 23 21 19 27 27 C 1.47575 * 108.73694 * 358.63174 * 18 17 16 28 28 O 1.41884 * 111.46489 * 309.99824 * 15 14 5 29 29 H 1.08998 * 109.47671 * 299.89266 * 1 2 3 30 30 H 1.09000 * 109.47383 * 59.89713 * 1 2 3 31 31 H 1.09005 * 109.47267 * 179.89302 * 1 2 3 32 32 H 1.08999 * 109.62108 * 53.23172 * 4 2 1 33 33 H 1.09005 * 109.62600 * 292.67544 * 4 2 1 34 34 H 1.07997 * 119.16131 * 0.36907 * 9 8 6 35 35 H 1.09002 * 109.74145 * 165.13583 * 11 10 9 36 36 H 1.08996 * 109.74214 * 285.83798 * 11 10 9 37 37 H 1.09006 * 109.75235 * 61.47140 * 12 11 10 38 38 H 1.09001 * 109.75678 * 182.16731 * 12 11 10 39 39 H 1.08997 * 109.67302 * 289.42291 * 14 5 4 40 40 H 1.09000 * 109.67318 * 168.89061 * 14 5 4 41 41 H 1.08998 * 110.73066 * 270.74964 * 16 15 14 42 42 H 1.09000 * 110.72977 * 33.87774 * 16 15 14 43 43 H 1.09007 * 109.98816 * 219.37348 * 17 16 15 44 44 H 1.08999 * 109.76912 * 98.22109 * 17 16 15 45 45 H 0.97003 * 119.99699 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.37816 * 142.39067 * 27 18 17 47 47 H 1.09007 * 110.37459 * 264.62352 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7246 1.2498 5 7 3.5035 -0.8622 1.1458 6 6 4.3122 -0.4737 2.1516 7 8 5.5151 -0.6391 2.0638 8 6 3.7442 0.1468 3.3494 9 6 2.6770 -0.4142 3.9335 10 8 2.1086 0.1206 5.0351 11 6 2.8919 1.0687 5.7696 12 6 3.5245 2.0438 4.7661 13 8 4.3164 1.2783 3.8474 14 6 4.0539 -1.4387 -0.0933 15 6 3.4216 -0.7223 -1.2801 16 6 4.0037 0.7005 -1.4218 17 6 3.8635 0.9828 -2.9340 18 7 3.7500 -0.3171 -3.6128 19 6 3.5881 -0.5021 -4.9598 20 1 3.5197 -1.5016 -5.3633 21 6 3.5119 0.5949 -5.8069 22 7 3.5948 1.8130 -5.3153 23 14 3.2917 0.3425 -7.6447 24 1 4.6236 0.2465 -8.2943 25 1 2.5325 -0.9111 -7.8846 26 1 2.5438 1.4911 -8.2160 27 6 3.8458 -1.3891 -2.6031 28 8 2.0080 -0.6775 -1.1665 29 1 -0.3634 0.5121 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5850 -1.7121 1.3134 33 1 1.7912 -0.1444 2.1379 34 1 2.2604 -1.3171 3.5122 35 1 2.2528 1.6164 6.4622 36 1 3.6750 0.5498 6.3223 37 1 2.7414 2.5773 4.2272 38 1 4.1589 2.7557 5.2941 39 1 3.8192 -2.5021 -0.1390 40 1 5.1347 -1.2997 -0.1142 41 1 3.4231 1.4147 -0.8379 42 1 5.0515 0.7203 -1.1221 43 1 4.7430 1.5148 -3.2968 44 1 2.9675 1.5759 -3.1169 45 1 3.5412 2.5796 -5.9072 46 1 3.1678 -2.2057 -2.8510 47 1 4.8703 -1.7551 -2.5342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:05 Heat of formation + Delta-G solvation = -77.112474 kcal Electronic energy + Delta-G solvation = -31479.517159 eV Core-core repulsion = 27244.689437 eV Total energy + Delta-G solvation = -4234.827722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54787 -40.39089 -38.68790 -37.26132 -36.39029 -34.77486 -33.24529 -32.30367 -31.33270 -29.76219 -29.05377 -28.26380 -26.71633 -25.90033 -25.20983 -23.73697 -22.00096 -21.37390 -20.19957 -19.72775 -19.16556 -18.62612 -17.87092 -17.23553 -17.00575 -16.55201 -15.86005 -15.45405 -15.42184 -15.07601 -14.69045 -14.63566 -14.53596 -14.23038 -14.08780 -13.86443 -13.48292 -13.37856 -13.02931 -12.67918 -12.45543 -12.27853 -12.09427 -11.98507 -11.78849 -11.60941 -11.38331 -11.07892 -10.98408 -10.89244 -10.84513 -10.34944 -10.20198 -10.09599 -10.06713 -9.87849 -9.66686 -9.52321 -8.55328 -8.54331 -8.37172 -6.78581 -5.65683 -2.98880 1.21329 2.05721 2.72389 3.00614 3.33878 3.44138 3.48723 3.50850 3.84695 3.92071 4.29903 4.44110 4.52276 4.53825 4.61950 4.71915 4.84494 4.93219 5.01092 5.09239 5.10565 5.15935 5.31086 5.42560 5.49230 5.54374 5.60026 5.60761 5.77669 5.79781 5.89117 5.99260 6.13397 6.18232 6.26859 6.40449 6.50582 6.52058 6.56114 6.65843 6.99264 7.17751 7.59379 7.66323 7.68313 7.87700 7.95067 8.29790 9.26469 9.86513 10.52181 11.46172 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.002985 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.934427 B = 9378.603984 C = 9597.674718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.061 3.939 5 N -0.600 5.600 6 C 0.580 3.420 7 O -0.518 6.518 8 C -0.058 4.058 9 C -0.012 4.012 10 O -0.301 6.301 11 C 0.014 3.986 12 C 0.017 3.983 13 O -0.287 6.287 14 C 0.100 3.900 15 C 0.093 3.907 16 C -0.166 4.166 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.153 3.847 28 O -0.342 6.342 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.251 0.749 46 H 0.052 0.948 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -2.132 23.446 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.062 4.062 5 N -0.334 5.334 6 C 0.366 3.634 7 O -0.394 6.394 8 C -0.107 4.107 9 C -0.077 4.077 10 O -0.214 6.214 11 C -0.062 4.062 12 C -0.058 4.058 13 O -0.201 6.201 14 C -0.022 4.022 15 C 0.052 3.948 16 C -0.205 4.205 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.218 1.218 27 C 0.026 3.974 28 O -0.261 6.261 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.200 0.800 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.278 -2.117 23.102 23.792 hybrid contribution 0.002 0.286 -0.564 0.633 sum -5.277 -1.831 22.538 23.220 Atomic orbital electron populations 1.21691 0.92317 1.03054 1.02797 1.22432 0.95415 0.96097 0.84945 0.91634 1.22989 0.79855 1.02424 1.00938 1.48017 1.06854 1.62302 1.16241 1.17153 0.86122 0.78553 0.81529 1.90858 1.14119 1.54931 1.79464 1.20357 0.99375 0.92550 0.98444 1.23162 0.96238 0.99269 0.89028 1.86120 1.41853 1.56488 1.36903 1.23708 0.97157 0.91331 0.93953 1.23716 0.97153 0.93502 0.91465 1.86476 1.40789 1.33429 1.59434 1.22246 1.00772 0.97490 0.81659 1.22405 0.81086 0.96554 0.94787 1.23379 1.00046 0.95683 1.01370 1.21098 1.00779 0.87826 0.84144 1.44416 1.85827 1.00061 1.02226 1.19041 1.42689 0.92902 0.80594 0.90365 1.24792 1.02307 0.95276 0.98124 1.69971 1.56911 0.96918 1.33192 0.86107 0.77585 0.76917 0.85078 1.21672 1.20696 1.21764 1.21327 0.97573 0.92595 0.85871 1.87924 1.20085 1.76453 1.41634 0.91286 0.90957 0.91661 0.89926 0.88314 0.80037 0.86039 0.90125 0.90170 0.85965 0.90436 0.87745 0.92050 0.91642 0.93969 0.93461 0.93850 0.93009 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 37.16 0.36 -1.18 16 2 C 0.07 0.95 3.19 -26.59 -0.08 0.87 16 3 H 0.07 0.97 6.24 -51.93 -0.32 0.65 16 4 C 0.06 0.67 4.50 -3.54 -0.02 0.65 16 5 N -0.60 -8.28 2.95 -174.35 -0.51 -8.79 16 6 C 0.58 8.83 7.36 -12.99 -0.10 8.73 16 7 O -0.52 -9.82 16.61 0.93 0.02 -9.81 16 8 C -0.06 -0.74 5.88 -37.81 -0.22 -0.96 16 9 C -0.01 -0.11 8.29 29.23 0.24 0.13 16 10 O -0.30 -2.63 10.47 -30.83 -0.32 -2.95 16 11 C 0.01 0.09 7.29 37.44 0.27 0.36 16 12 C 0.02 0.13 7.32 37.44 0.27 0.40 16 13 O -0.29 -3.67 10.48 -40.86 -0.43 -4.09 16 14 C 0.10 1.54 5.29 -3.92 -0.02 1.52 16 15 C 0.09 1.69 0.84 -89.65 -0.08 1.61 16 16 C -0.17 -3.33 5.87 -25.24 -0.15 -3.48 16 17 C 0.19 4.69 5.39 -2.95 -0.02 4.68 16 18 N -0.60 -15.64 3.40 -170.31 -0.58 -16.22 16 19 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -27.60 10.31 55.49 0.57 -27.02 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 C 0.15 3.22 6.41 -2.87 -0.02 3.20 16 28 O -0.34 -6.14 9.93 -35.22 -0.35 -6.49 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.91 4.66 -51.93 -0.24 0.67 16 34 H 0.18 1.41 6.58 -52.49 -0.35 1.06 16 35 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.72 6.88 -51.93 -0.36 1.36 16 41 H 0.06 1.17 6.08 -51.93 -0.32 0.85 16 42 H 0.06 1.30 7.82 -51.93 -0.41 0.89 16 43 H 0.04 1.17 7.52 -51.92 -0.39 0.78 16 44 H 0.05 1.33 7.37 -51.93 -0.38 0.94 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -35.72 366.69 -7.86 -43.58 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.95 Total: -0.85 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 0.20 Total: 9.68 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.52 Total: -52.03 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.09 Total: -23.34 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.72 -7.86 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.532 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds