Wall clock time and date at job start Tue Mar 31 2020 20:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50827 * 2 1 4 4 C 1.53272 * 109.51337 * 120.10286 * 2 1 3 5 5 N 1.47169 * 108.55673 * 172.95079 * 4 2 1 6 6 C 1.34784 * 121.07519 * 128.77149 * 5 4 2 7 7 O 1.21737 * 119.99332 * 177.45180 * 6 5 4 8 8 C 1.46370 * 120.00222 * 357.45340 * 6 5 4 9 9 C 1.33971 * 119.23400 * 46.78318 * 8 6 5 10 10 O 1.35002 * 121.68902 * 180.39308 * 9 8 6 11 11 C 1.43244 * 116.76490 * 342.79668 * 10 9 8 12 12 C 1.53552 * 108.08913 * 45.48830 * 11 10 9 13 13 O 1.36222 * 119.23256 * 226.51715 * 8 6 5 14 14 C 1.47326 * 117.84252 * 308.74646 * 5 4 2 15 15 C 1.52362 * 108.42602 * 49.16181 * 14 5 4 16 16 C 1.54376 * 110.38983 * 73.48750 * 15 14 5 17 17 C 1.54475 * 102.94989 * 152.19638 * 16 15 14 18 18 N 1.47083 * 107.29331 * 338.85880 * 17 16 15 19 19 C 1.36927 * 125.63019 * 178.89230 * 18 17 16 20 20 H 1.07998 * 120.00300 * 179.69147 * 19 18 17 21 21 C 1.38814 * 120.00131 * 359.69650 * 19 18 17 22 22 N 1.31618 * 119.99804 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47279 * 270.00065 * 23 21 19 25 25 H 1.48509 * 109.46862 * 29.99911 * 23 21 19 26 26 H 1.48497 * 109.47197 * 149.99680 * 23 21 19 27 27 C 1.47575 * 108.73694 * 358.63174 * 18 17 16 28 28 O 1.41884 * 111.46489 * 309.99824 * 15 14 5 29 29 H 1.08998 * 109.47671 * 299.89266 * 1 2 3 30 30 H 1.09000 * 109.47383 * 59.89713 * 1 2 3 31 31 H 1.09005 * 109.47267 * 179.89302 * 1 2 3 32 32 H 1.08999 * 109.62108 * 53.23172 * 4 2 1 33 33 H 1.09005 * 109.62600 * 292.67544 * 4 2 1 34 34 H 1.07997 * 119.16131 * 0.36907 * 9 8 6 35 35 H 1.09002 * 109.74145 * 165.13583 * 11 10 9 36 36 H 1.08996 * 109.74214 * 285.83798 * 11 10 9 37 37 H 1.09006 * 109.75235 * 61.47140 * 12 11 10 38 38 H 1.09001 * 109.75678 * 182.16731 * 12 11 10 39 39 H 1.08997 * 109.67302 * 289.42291 * 14 5 4 40 40 H 1.09000 * 109.67318 * 168.89061 * 14 5 4 41 41 H 1.08998 * 110.73066 * 270.74964 * 16 15 14 42 42 H 1.09000 * 110.72977 * 33.87774 * 16 15 14 43 43 H 1.09007 * 109.98816 * 219.37348 * 17 16 15 44 44 H 1.08999 * 109.76912 * 98.22109 * 17 16 15 45 45 H 0.97003 * 119.99699 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.37816 * 142.39067 * 27 18 17 47 47 H 1.09007 * 110.37459 * 264.62352 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7246 1.2498 5 7 3.5035 -0.8622 1.1458 6 6 4.3122 -0.4737 2.1516 7 8 5.5151 -0.6391 2.0638 8 6 3.7442 0.1468 3.3494 9 6 2.6770 -0.4142 3.9335 10 8 2.1086 0.1206 5.0351 11 6 2.8919 1.0687 5.7696 12 6 3.5245 2.0438 4.7661 13 8 4.3164 1.2783 3.8474 14 6 4.0539 -1.4387 -0.0933 15 6 3.4216 -0.7223 -1.2801 16 6 4.0037 0.7005 -1.4218 17 6 3.8635 0.9828 -2.9340 18 7 3.7500 -0.3171 -3.6128 19 6 3.5881 -0.5021 -4.9598 20 1 3.5197 -1.5016 -5.3633 21 6 3.5119 0.5949 -5.8069 22 7 3.5948 1.8130 -5.3153 23 14 3.2917 0.3425 -7.6447 24 1 4.6236 0.2465 -8.2943 25 1 2.5325 -0.9111 -7.8846 26 1 2.5438 1.4911 -8.2160 27 6 3.8458 -1.3891 -2.6031 28 8 2.0080 -0.6775 -1.1665 29 1 -0.3634 0.5121 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5850 -1.7121 1.3134 33 1 1.7912 -0.1444 2.1379 34 1 2.2604 -1.3171 3.5122 35 1 2.2528 1.6164 6.4622 36 1 3.6750 0.5498 6.3223 37 1 2.7414 2.5773 4.2272 38 1 4.1589 2.7557 5.2941 39 1 3.8192 -2.5021 -0.1390 40 1 5.1347 -1.2997 -0.1142 41 1 3.4231 1.4147 -0.8379 42 1 5.0515 0.7203 -1.1221 43 1 4.7430 1.5148 -3.2968 44 1 2.9675 1.5759 -3.1169 45 1 3.5412 2.5796 -5.9072 46 1 3.1678 -2.2057 -2.8510 47 1 4.8703 -1.7551 -2.5342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071129929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:04 Heat of formation + Delta-G solvation = -103.160525 kcal Electronic energy + Delta-G solvation = -31480.646687 eV Core-core repulsion = 27244.689437 eV Total energy + Delta-G solvation = -4235.957251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41636 -41.50496 -39.94029 -38.12022 -37.87684 -36.01295 -34.84735 -33.29964 -32.79996 -31.14740 -30.43165 -29.54990 -27.70950 -27.33057 -26.24386 -25.36614 -23.20085 -22.43443 -22.03437 -20.58110 -20.48600 -19.35108 -18.96759 -18.83662 -18.10407 -17.86627 -16.89336 -16.77783 -16.54894 -16.27493 -15.93522 -15.78431 -15.59615 -15.53783 -15.21687 -15.11940 -14.78482 -14.55493 -14.23202 -14.04534 -13.81377 -13.59610 -13.34841 -13.13092 -13.01112 -12.85967 -12.82949 -12.75296 -12.27999 -12.06812 -12.05220 -12.01437 -11.86746 -11.83117 -11.69076 -11.40841 -11.01784 -10.93501 -10.70948 -9.68640 -9.22922 -8.91782 -7.84280 -5.20268 0.37042 1.09112 1.45915 1.48733 1.57303 1.81531 2.26682 2.49047 2.52873 2.59620 3.33407 3.38021 3.40945 3.50209 3.54914 3.76919 3.84629 3.89090 3.94718 3.99019 4.01662 4.14862 4.24103 4.34892 4.37399 4.44663 4.46845 4.57606 4.64003 4.66286 4.74163 4.76280 4.83119 4.83508 4.93958 5.02771 5.08677 5.16489 5.32948 5.43100 5.56101 5.69122 5.72801 6.08887 6.16687 6.30985 6.36260 6.86203 7.08325 7.75109 8.40228 9.26759 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.002985 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.934427 B = 9378.603984 C = 9597.674718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.046 0.954 4 C 0.067 3.933 5 N -0.597 5.597 6 C 0.578 3.422 7 O -0.568 6.568 8 C -0.095 4.095 9 C 0.026 3.974 10 O -0.302 6.302 11 C 0.012 3.988 12 C 0.010 3.990 13 O -0.324 6.324 14 C 0.108 3.892 15 C 0.110 3.890 16 C -0.152 4.152 17 C 0.200 3.800 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.286 1.286 25 H -0.266 1.266 26 H -0.295 1.295 27 C 0.146 3.854 28 O -0.366 6.366 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.206 0.794 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.003 0.997 44 H 0.009 0.991 45 H 0.245 0.755 46 H 0.058 0.942 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -3.616 25.915 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 H 0.064 0.936 4 C -0.054 4.054 5 N -0.330 5.330 6 C 0.367 3.633 7 O -0.448 6.448 8 C -0.143 4.143 9 C -0.040 4.040 10 O -0.214 6.214 11 C -0.062 4.062 12 C -0.065 4.065 13 O -0.240 6.240 14 C -0.014 4.014 15 C 0.069 3.931 16 C -0.190 4.190 17 C 0.075 3.925 18 N -0.347 5.347 19 C -0.367 4.367 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.810 3.190 24 H -0.213 1.213 25 H -0.191 1.191 26 H -0.222 1.222 27 C 0.021 3.979 28 O -0.285 6.285 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.222 0.778 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.162 0.838 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.027 0.973 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.371 -3.628 25.613 26.899 hybrid contribution 0.573 0.796 -1.229 1.573 sum -6.798 -2.832 24.384 25.472 Atomic orbital electron populations 1.21712 0.89971 1.04120 1.03413 1.22739 0.97203 0.95100 0.84689 0.93569 1.23165 0.77960 1.04147 1.00168 1.48053 1.08011 1.61689 1.15284 1.17615 0.85566 0.77764 0.82375 1.90821 1.16301 1.56880 1.80790 1.20016 1.01283 0.94077 0.98918 1.23463 0.93942 0.98434 0.88150 1.86135 1.42225 1.56679 1.36345 1.24006 0.97803 0.90759 0.93666 1.24054 0.97563 0.93713 0.91146 1.86398 1.42732 1.33958 1.60869 1.22015 0.99721 0.98471 0.81243 1.22076 0.81849 0.94500 0.94705 1.23182 1.00493 0.97898 0.97472 1.20731 0.97115 0.87296 0.87407 1.44701 1.85730 1.01579 1.02678 1.19489 1.41847 0.93338 0.82019 0.89509 1.25702 1.02694 0.95054 1.02776 1.70212 1.58212 0.97570 1.34391 0.85020 0.77481 0.77060 0.79417 1.21301 1.19064 1.22207 1.21538 0.98478 0.91705 0.86190 1.87888 1.19377 1.77008 1.44232 0.87825 0.93216 0.90311 0.86844 0.86011 0.77799 0.82408 0.89878 0.89652 0.83820 0.87856 0.89158 0.91221 0.91636 0.97874 0.97280 0.94545 0.92369 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.57 71.98 0.69 -1.90 16 2 C 0.06 1.54 3.19 30.69 0.10 1.64 16 3 H 0.05 1.35 6.24 -2.39 -0.01 1.34 16 4 C 0.07 1.25 4.50 86.34 0.39 1.64 16 5 N -0.60 -15.44 2.95 -823.71 -2.43 -17.87 16 6 C 0.58 17.15 7.36 86.36 0.64 17.78 16 7 O -0.57 -21.93 16.61 -0.43 -0.01 -21.94 16 8 C -0.09 -2.23 5.88 23.42 0.14 -2.09 16 9 C 0.03 0.41 8.29 66.85 0.55 0.97 16 10 O -0.30 -4.02 10.47 -69.24 -0.73 -4.74 16 11 C 0.01 0.11 7.29 72.17 0.53 0.63 16 12 C 0.01 0.12 7.32 72.17 0.53 0.65 16 13 O -0.32 -7.99 10.48 -76.57 -0.80 -8.79 16 14 C 0.11 3.19 5.29 86.01 0.45 3.65 16 15 C 0.11 3.98 0.84 -10.16 -0.01 3.97 16 16 C -0.15 -6.31 5.87 31.56 0.19 -6.13 16 17 C 0.20 10.67 5.39 86.77 0.47 11.14 16 18 N -0.62 -33.44 3.40 -692.73 -2.36 -35.79 16 19 C -0.24 -13.78 10.28 84.04 0.86 -12.92 16 20 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 22 N -0.95 -59.79 10.31 21.65 0.22 -59.56 16 23 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 27 C 0.15 6.17 6.41 86.55 0.56 6.72 16 28 O -0.37 -12.80 9.93 -148.95 -1.48 -14.28 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 1.74 4.66 -2.38 -0.01 1.73 16 34 H 0.21 2.17 6.58 -2.91 -0.02 2.16 16 35 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.09 2.97 6.88 -2.39 -0.02 2.95 16 41 H 0.07 2.75 6.08 -2.39 -0.01 2.74 16 42 H 0.06 2.70 7.82 -2.39 -0.02 2.68 16 43 H 0.00 0.18 7.52 -2.38 -0.02 0.17 16 44 H 0.01 0.54 7.37 -2.39 -0.02 0.52 16 45 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 46 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.98 8.00 -2.38 -0.02 1.96 16 Total: -1.00 -83.14 366.69 1.98 -81.17 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.98 Total: 10.58 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.54 Total: 22.12 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -4.56 Total: -113.22 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -3.01 Total: -49.75 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -83.14 1.98 -81.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.993 kcal (2) G-P(sol) polarization free energy of solvation -83.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds