Wall clock time and date at job start Tue Mar 31 2020 20:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.51354 * 2 1 4 4 C 1.53286 * 109.51828 * 120.10642 * 2 1 3 5 5 N 1.47163 * 108.50278 * 172.90434 * 4 2 1 6 6 C 1.34773 * 121.05549 * 128.53253 * 5 4 2 7 7 O 1.21724 * 120.00374 * 356.82347 * 6 5 4 8 8 C 1.46380 * 119.99316 * 176.82462 * 6 5 4 9 9 C 1.33974 * 119.23520 * 324.03515 * 8 6 5 10 10 O 1.35004 * 121.69032 * 180.35470 * 9 8 6 11 11 C 1.43246 * 116.76000 * 342.81574 * 10 9 8 12 12 C 1.53548 * 108.08653 * 45.49236 * 11 10 9 13 13 O 1.36218 * 119.22937 * 143.76973 * 8 6 5 14 14 C 1.47299 * 117.88175 * 308.80718 * 5 4 2 15 15 C 1.52513 * 108.46036 * 49.33196 * 14 5 4 16 16 C 1.54514 * 110.04560 * 187.25392 * 15 14 5 17 17 C 1.55020 * 101.53380 * 206.93512 * 16 15 14 18 18 N 1.47484 * 104.89892 * 36.37710 * 17 16 15 19 19 C 1.36936 * 125.66437 * 155.96144 * 18 17 16 20 20 H 1.07999 * 119.99852 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00040 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00285 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47172 * 90.00200 * 23 21 19 25 25 H 1.48497 * 109.46981 * 210.00377 * 23 21 19 26 26 H 1.48506 * 109.46924 * 329.99994 * 23 21 19 27 27 C 1.47184 * 108.66968 * 335.97929 * 18 17 16 28 28 O 1.42060 * 111.13962 * 309.78122 * 15 14 5 29 29 H 1.09009 * 109.47123 * 299.89024 * 1 2 3 30 30 H 1.08996 * 109.47398 * 59.89077 * 1 2 3 31 31 H 1.09001 * 109.47342 * 179.89602 * 1 2 3 32 32 H 1.08999 * 109.63034 * 53.20153 * 4 2 1 33 33 H 1.08998 * 109.79537 * 292.71023 * 4 2 1 34 34 H 1.08007 * 119.15384 * 0.37030 * 9 8 6 35 35 H 1.09005 * 109.73622 * 165.13826 * 11 10 9 36 36 H 1.08999 * 109.74322 * 285.84088 * 11 10 9 37 37 H 1.08996 * 109.75686 * 61.47739 * 12 11 10 38 38 H 1.09004 * 109.75185 * 182.16389 * 12 11 10 39 39 H 1.08999 * 109.63594 * 169.02388 * 14 5 4 40 40 H 1.08992 * 109.63811 * 289.64259 * 14 5 4 41 41 H 1.09003 * 111.01154 * 324.99817 * 16 15 14 42 42 H 1.09002 * 111.01546 * 88.86898 * 16 15 14 43 43 H 1.09004 * 110.35212 * 155.23256 * 17 16 15 44 44 H 1.08996 * 110.35463 * 277.51575 * 17 16 15 45 45 H 0.96999 * 120.00074 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.90757 * 242.13947 * 27 18 17 47 47 H 1.08998 * 109.91012 * 120.87968 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5034 -0.8625 1.1439 6 6 4.3133 -0.4697 2.1469 7 8 3.8433 0.0609 3.1365 8 6 5.7583 -0.6811 2.0462 9 6 6.2174 -1.7881 1.4474 10 8 7.5395 -2.0365 1.3334 11 6 8.4233 -0.9257 1.5257 12 6 7.9611 -0.1592 2.7733 13 8 6.6048 0.2550 2.5586 14 6 4.0530 -1.4378 -0.0957 15 6 3.4231 -0.7173 -1.2832 16 6 3.8337 -1.4103 -2.6017 17 6 3.7405 -0.2371 -3.6107 18 7 4.2015 0.9459 -2.8602 19 6 4.7287 2.0841 -3.4093 20 1 5.0384 2.8983 -2.7709 21 6 4.8652 2.1915 -4.7865 22 7 4.4873 1.1995 -5.5646 23 14 5.5851 3.7440 -5.5356 24 1 7.0587 3.6009 -5.6503 25 1 5.0022 3.9591 -6.8843 26 1 5.2666 4.9061 -4.6676 27 6 4.0010 0.6997 -1.4230 28 8 2.0079 -0.6774 -1.1663 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5155 -0.8890 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5848 -1.7121 1.3138 33 1 1.7922 -0.1472 2.1398 34 1 5.5117 -2.5001 1.0453 35 1 9.4416 -1.2864 1.6715 36 1 8.3854 -0.2701 0.6558 37 1 8.0179 -0.8086 3.6469 38 1 8.5934 0.7160 2.9233 39 1 5.1341 -1.3006 -0.1154 40 1 3.8146 -2.5003 -0.1436 41 1 4.8522 -1.7937 -2.5411 42 1 3.1335 -2.2048 -2.8603 43 1 4.3905 -0.4203 -4.4663 44 1 2.7101 -0.1002 -3.9388 45 1 4.5823 1.2747 -6.5270 46 1 3.3001 1.4283 -1.0158 47 1 4.9544 0.7650 -0.8988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071129930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:09 Heat of formation + Delta-G solvation = -73.416610 kcal Electronic energy + Delta-G solvation = -31950.825933 eV Core-core repulsion = 27716.158475 eV Total energy + Delta-G solvation = -4234.667458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46116 -40.33444 -38.68993 -37.10328 -36.24783 -35.00774 -33.27174 -32.22403 -31.30091 -29.46169 -29.21274 -28.31268 -26.42054 -26.04136 -25.13347 -23.81182 -22.03697 -21.21889 -20.39652 -19.65730 -19.14583 -18.46247 -17.69558 -16.99598 -16.81729 -16.55228 -16.23832 -15.57161 -15.15408 -14.96230 -14.77022 -14.60810 -14.35869 -14.23378 -13.99654 -13.68639 -13.54994 -13.36559 -12.92160 -12.59700 -12.45067 -12.26072 -12.16875 -11.90431 -11.66131 -11.55953 -11.25922 -11.07757 -10.93635 -10.87826 -10.86055 -10.53196 -10.35535 -10.13030 -10.04636 -9.81557 -9.62090 -9.60758 -8.66427 -8.51043 -8.21193 -6.85229 -5.66830 -3.08317 1.25150 2.31639 2.97598 3.00146 3.38629 3.41188 3.44141 3.46148 3.82710 4.10363 4.40880 4.45359 4.62528 4.68200 4.72149 4.84193 4.90179 5.03330 5.08233 5.11618 5.15590 5.31102 5.33220 5.46196 5.48157 5.53385 5.56074 5.65960 5.69228 5.76864 5.82477 6.05522 6.13074 6.18631 6.28880 6.40063 6.48488 6.55453 6.58507 6.64543 7.10345 7.23635 7.54443 7.60467 7.60869 7.83083 8.01147 8.33265 9.20450 9.80362 10.45170 11.37145 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.004709 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.379173 B = 5944.307016 C = 7643.560148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.070 0.930 4 C 0.088 3.912 5 N -0.603 5.603 6 C 0.584 3.416 7 O -0.528 6.528 8 C -0.068 4.068 9 C -0.004 4.004 10 O -0.298 6.298 11 C 0.011 3.989 12 C 0.020 3.980 13 O -0.286 6.286 14 C 0.071 3.929 15 C 0.095 3.905 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.599 5.599 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.122 3.878 28 O -0.352 6.352 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.018 0.982 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -9.239 14.240 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.087 0.913 4 C -0.034 4.034 5 N -0.337 5.337 6 C 0.372 3.628 7 O -0.405 6.405 8 C -0.117 4.117 9 C -0.070 4.070 10 O -0.211 6.211 11 C -0.064 4.064 12 C -0.056 4.056 13 O -0.199 6.199 14 C -0.051 4.051 15 C 0.054 3.946 16 C -0.169 4.169 17 C 0.032 3.968 18 N -0.325 5.325 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.208 1.208 27 C -0.004 4.004 28 O -0.271 6.271 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.204 0.796 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.756 -8.906 14.450 17.065 hybrid contribution 0.696 1.016 -0.170 1.243 sum 2.452 -7.890 14.279 16.498 Atomic orbital electron populations 1.21676 0.92255 1.02895 1.02858 1.22482 0.95405 0.96446 0.84686 0.91251 1.22415 0.78481 1.02077 1.00397 1.47961 1.07000 1.62664 1.16111 1.17078 0.84375 0.78396 0.82917 1.90817 1.76326 1.42518 1.30843 1.20231 0.91121 0.95227 1.05099 1.23485 0.85353 0.99710 0.98432 1.86112 1.13946 1.35596 1.85426 1.23778 0.94350 0.89238 0.99026 1.23683 0.82410 1.01991 0.97559 1.86465 1.19255 1.34650 1.79574 1.23016 1.00712 0.98044 0.83349 1.22285 0.81135 0.96633 0.94509 1.23021 1.00214 0.99933 0.93756 1.21953 0.98918 0.82075 0.93825 1.44481 1.73050 1.16129 0.98856 1.19055 1.33088 0.92606 0.90300 0.90655 1.24762 1.01585 0.98281 0.95846 1.69786 1.53091 1.30696 1.03387 0.86084 0.78628 0.82290 0.78579 1.21588 1.21580 1.20774 1.21699 0.96944 0.93053 0.88747 1.87870 1.20108 1.76722 1.42427 0.91075 0.91128 0.91761 0.90425 0.88070 0.79623 0.86034 0.89524 0.90508 0.85999 0.87555 0.89938 0.90590 0.90847 0.87429 0.96372 0.93691 0.95589 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.57 37.15 0.36 -1.27 16 2 C 0.07 1.00 3.17 -26.59 -0.08 0.92 16 3 H 0.07 1.17 6.25 -51.93 -0.32 0.84 16 4 C 0.09 1.17 5.92 -3.53 -0.02 1.15 16 5 N -0.60 -8.71 2.95 -174.28 -0.51 -9.23 16 6 C 0.58 9.47 7.44 -12.99 -0.10 9.37 16 7 O -0.53 -10.06 16.54 -4.17 -0.07 -10.13 16 8 C -0.07 -1.00 6.07 -37.81 -0.23 -1.23 16 9 C 0.00 -0.05 8.35 29.23 0.24 0.20 16 10 O -0.30 -3.42 10.47 -30.83 -0.32 -3.74 16 11 C 0.01 0.10 7.29 37.44 0.27 0.38 16 12 C 0.02 0.19 7.32 37.44 0.27 0.46 16 13 O -0.29 -4.24 10.45 -43.20 -0.45 -4.70 16 14 C 0.07 0.99 3.43 -3.85 -0.01 0.97 16 15 C 0.10 1.66 0.81 -89.73 -0.07 1.59 16 16 C -0.13 -2.36 6.21 -24.87 -0.15 -2.52 16 17 C 0.16 3.77 5.89 -2.44 -0.01 3.76 16 18 N -0.60 -15.38 3.40 -170.24 -0.58 -15.96 16 19 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 C 0.12 2.62 6.34 -3.32 -0.02 2.60 16 28 O -0.35 -6.14 9.90 -35.23 -0.35 -6.49 16 29 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.35 7.06 -51.93 -0.37 0.98 16 34 H 0.19 1.90 5.66 -52.48 -0.30 1.60 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.45 4.38 -51.93 -0.23 1.23 16 40 H 0.08 0.93 7.95 -51.93 -0.41 0.51 16 41 H 0.08 1.26 8.01 -51.93 -0.42 0.84 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.03 0.60 6.03 -51.93 -0.31 0.28 16 47 H 0.03 0.55 7.61 -51.93 -0.40 0.16 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -34.61 364.62 -7.90 -42.51 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.83 Total: 1.56 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 0.19 Total: 9.64 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.53 Total: -51.21 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.19 Total: -25.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.61 -7.90 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds