Wall clock time and date at job start Tue Mar 31 2020 20:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.51354 * 2 1 4 4 C 1.53286 * 109.51828 * 120.10642 * 2 1 3 5 5 N 1.47163 * 108.50278 * 172.90434 * 4 2 1 6 6 C 1.34773 * 121.05549 * 128.53253 * 5 4 2 7 7 O 1.21724 * 120.00374 * 356.82347 * 6 5 4 8 8 C 1.46380 * 119.99316 * 176.82462 * 6 5 4 9 9 C 1.33974 * 119.23520 * 324.03515 * 8 6 5 10 10 O 1.35004 * 121.69032 * 180.35470 * 9 8 6 11 11 C 1.43246 * 116.76000 * 342.81574 * 10 9 8 12 12 C 1.53548 * 108.08653 * 45.49236 * 11 10 9 13 13 O 1.36218 * 119.22937 * 143.76973 * 8 6 5 14 14 C 1.47299 * 117.88175 * 308.80718 * 5 4 2 15 15 C 1.52513 * 108.46036 * 49.33196 * 14 5 4 16 16 C 1.54514 * 110.04560 * 187.25392 * 15 14 5 17 17 C 1.55020 * 101.53380 * 206.93512 * 16 15 14 18 18 N 1.47484 * 104.89892 * 36.37710 * 17 16 15 19 19 C 1.36936 * 125.66437 * 155.96144 * 18 17 16 20 20 H 1.07999 * 119.99852 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00040 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00285 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47172 * 90.00200 * 23 21 19 25 25 H 1.48497 * 109.46981 * 210.00377 * 23 21 19 26 26 H 1.48506 * 109.46924 * 329.99994 * 23 21 19 27 27 C 1.47184 * 108.66968 * 335.97929 * 18 17 16 28 28 O 1.42060 * 111.13962 * 309.78122 * 15 14 5 29 29 H 1.09009 * 109.47123 * 299.89024 * 1 2 3 30 30 H 1.08996 * 109.47398 * 59.89077 * 1 2 3 31 31 H 1.09001 * 109.47342 * 179.89602 * 1 2 3 32 32 H 1.08999 * 109.63034 * 53.20153 * 4 2 1 33 33 H 1.08998 * 109.79537 * 292.71023 * 4 2 1 34 34 H 1.08007 * 119.15384 * 0.37030 * 9 8 6 35 35 H 1.09005 * 109.73622 * 165.13826 * 11 10 9 36 36 H 1.08999 * 109.74322 * 285.84088 * 11 10 9 37 37 H 1.08996 * 109.75686 * 61.47739 * 12 11 10 38 38 H 1.09004 * 109.75185 * 182.16389 * 12 11 10 39 39 H 1.08999 * 109.63594 * 169.02388 * 14 5 4 40 40 H 1.08992 * 109.63811 * 289.64259 * 14 5 4 41 41 H 1.09003 * 111.01154 * 324.99817 * 16 15 14 42 42 H 1.09002 * 111.01546 * 88.86898 * 16 15 14 43 43 H 1.09004 * 110.35212 * 155.23256 * 17 16 15 44 44 H 1.08996 * 110.35463 * 277.51575 * 17 16 15 45 45 H 0.96999 * 120.00074 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.90757 * 242.13947 * 27 18 17 47 47 H 1.08998 * 109.91012 * 120.87968 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5034 -0.8625 1.1439 6 6 4.3133 -0.4697 2.1469 7 8 3.8433 0.0609 3.1365 8 6 5.7583 -0.6811 2.0462 9 6 6.2174 -1.7881 1.4474 10 8 7.5395 -2.0365 1.3334 11 6 8.4233 -0.9257 1.5257 12 6 7.9611 -0.1592 2.7733 13 8 6.6048 0.2550 2.5586 14 6 4.0530 -1.4378 -0.0957 15 6 3.4231 -0.7173 -1.2832 16 6 3.8337 -1.4103 -2.6017 17 6 3.7405 -0.2371 -3.6107 18 7 4.2015 0.9459 -2.8602 19 6 4.7287 2.0841 -3.4093 20 1 5.0384 2.8983 -2.7709 21 6 4.8652 2.1915 -4.7865 22 7 4.4873 1.1995 -5.5646 23 14 5.5851 3.7440 -5.5356 24 1 7.0587 3.6009 -5.6503 25 1 5.0022 3.9591 -6.8843 26 1 5.2666 4.9061 -4.6676 27 6 4.0010 0.6997 -1.4230 28 8 2.0079 -0.6774 -1.1663 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5155 -0.8890 31 1 -0.3634 -1.0277 -0.0019 32 1 1.5848 -1.7121 1.3138 33 1 1.7922 -0.1472 2.1398 34 1 5.5117 -2.5001 1.0453 35 1 9.4416 -1.2864 1.6715 36 1 8.3854 -0.2701 0.6558 37 1 8.0179 -0.8086 3.6469 38 1 8.5934 0.7160 2.9233 39 1 5.1341 -1.3006 -0.1154 40 1 3.8146 -2.5003 -0.1436 41 1 4.8522 -1.7937 -2.5411 42 1 3.1335 -2.2048 -2.8603 43 1 4.3905 -0.4203 -4.4663 44 1 2.7101 -0.1002 -3.9388 45 1 4.5823 1.2747 -6.5270 46 1 3.3001 1.4283 -1.0158 47 1 4.9544 0.7650 -0.8988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071129930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:08 Heat of formation + Delta-G solvation = -97.968575 kcal Electronic energy + Delta-G solvation = -31951.890586 eV Core-core repulsion = 27716.158475 eV Total energy + Delta-G solvation = -4235.732111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.49435 -41.48432 -39.98730 -38.10381 -37.80487 -36.22363 -34.89337 -33.43391 -32.69694 -31.09366 -30.11779 -29.84255 -27.73774 -27.39143 -26.24927 -25.38606 -23.25177 -22.49748 -22.00312 -20.68922 -20.49194 -19.38526 -19.04328 -18.76462 -17.94132 -17.54354 -17.50766 -16.86311 -16.55197 -16.38537 -15.92519 -15.76401 -15.63467 -15.37167 -15.25827 -15.11402 -14.91978 -14.55052 -14.21719 -14.13044 -13.72653 -13.41520 -13.28174 -13.15470 -13.07149 -12.93756 -12.81877 -12.70244 -12.30758 -12.14916 -12.09557 -12.02775 -11.93492 -11.75347 -11.67270 -11.41425 -11.07013 -10.98396 -10.76469 -9.72255 -9.20724 -8.93105 -7.80478 -5.25339 0.23346 1.26642 1.43916 1.45678 1.54414 1.87704 2.15245 2.44531 2.47172 2.56741 3.27176 3.36747 3.39105 3.41378 3.64473 3.73599 3.77677 3.89897 3.94415 3.96306 4.02057 4.13864 4.19948 4.24684 4.39873 4.45871 4.47114 4.56091 4.61611 4.65591 4.67440 4.77952 4.78907 4.94766 4.99394 5.01601 5.05896 5.14625 5.29163 5.41219 5.62844 5.70035 5.78802 6.01845 6.26487 6.27331 6.29416 6.85067 7.08149 7.73079 8.37117 9.20930 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.004709 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.379173 B = 5944.307016 C = 7643.560148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.036 0.964 4 C 0.092 3.908 5 N -0.601 5.601 6 C 0.580 3.420 7 O -0.569 6.569 8 C -0.103 4.103 9 C 0.024 3.976 10 O -0.301 6.301 11 C 0.009 3.991 12 C 0.013 3.987 13 O -0.322 6.322 14 C 0.079 3.921 15 C 0.104 3.896 16 C -0.114 4.114 17 C 0.159 3.841 18 N -0.619 5.619 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.978 3.022 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.122 3.878 28 O -0.366 6.366 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.209 0.791 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.080 0.920 44 H -0.017 1.017 45 H 0.250 0.750 46 H 0.006 0.994 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -11.254 15.080 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.054 0.946 4 C -0.030 4.030 5 N -0.334 5.334 6 C 0.370 3.630 7 O -0.449 6.449 8 C -0.152 4.152 9 C -0.042 4.042 10 O -0.213 6.213 11 C -0.066 4.066 12 C -0.062 4.062 13 O -0.237 6.237 14 C -0.043 4.043 15 C 0.063 3.937 16 C -0.152 4.152 17 C 0.034 3.966 18 N -0.345 5.345 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.251 4.251 22 N -0.592 5.592 23 Si 0.806 3.194 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.004 4.004 28 O -0.285 6.285 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.226 0.774 35 H 0.178 0.822 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.001 0.999 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.604 -10.941 15.294 18.984 hybrid contribution 0.465 1.701 -0.447 1.819 sum 3.069 -9.240 14.847 17.755 Atomic orbital electron populations 1.21683 0.89822 1.04281 1.03234 1.22628 0.97275 0.94719 0.84679 0.94573 1.22475 0.78006 1.03439 0.99061 1.48022 1.07422 1.62129 1.15818 1.17416 0.85289 0.77672 0.82629 1.90779 1.77155 1.44523 1.32476 1.20137 0.90490 0.96697 1.07851 1.23807 0.86091 0.98519 0.95788 1.86118 1.13746 1.36646 1.84811 1.24040 0.95579 0.88657 0.98307 1.24018 0.80537 1.03455 0.98164 1.86390 1.21293 1.35872 1.80172 1.23052 1.00435 0.99603 0.81168 1.22145 0.81547 0.93963 0.96021 1.22889 1.02415 0.98018 0.91886 1.21733 0.95894 0.84116 0.94841 1.44760 1.72812 1.16108 1.00811 1.19337 1.33537 0.93664 0.90870 0.91207 1.25560 1.02133 1.01281 0.96144 1.70024 1.53739 1.32170 1.03248 0.85099 0.78078 0.78865 0.77386 1.20630 1.21611 1.20270 1.21817 0.96480 0.95749 0.86377 1.87855 1.19862 1.76787 1.43986 0.88864 0.92627 0.89795 0.87259 0.88416 0.77436 0.82247 0.90490 0.89466 0.83768 0.87247 0.85548 0.88331 0.88255 0.90239 0.99936 0.94063 0.97641 0.96001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.57 71.98 0.69 -2.23 16 2 C 0.07 1.88 3.17 30.69 0.10 1.98 16 3 H 0.04 1.28 6.25 -2.39 -0.01 1.26 16 4 C 0.09 2.26 5.92 86.35 0.51 2.77 16 5 N -0.60 -16.37 2.95 -823.52 -2.43 -18.79 16 6 C 0.58 18.51 7.44 86.36 0.64 19.16 16 7 O -0.57 -22.00 16.54 4.50 0.07 -21.93 16 8 C -0.10 -2.94 6.07 23.42 0.14 -2.79 16 9 C 0.02 0.53 8.35 66.85 0.56 1.09 16 10 O -0.30 -6.00 10.47 -69.26 -0.73 -6.73 16 11 C 0.01 0.14 7.29 72.17 0.53 0.66 16 12 C 0.01 0.23 7.32 72.17 0.53 0.76 16 13 O -0.32 -9.51 10.45 -74.27 -0.78 -10.29 16 14 C 0.08 1.96 3.43 86.07 0.30 2.26 16 15 C 0.10 3.50 0.81 -10.22 -0.01 3.49 16 16 C -0.11 -3.91 6.21 31.80 0.20 -3.72 16 17 C 0.16 7.81 5.89 86.88 0.51 8.32 16 18 N -0.62 -32.74 3.40 -692.51 -2.36 -35.10 16 19 C -0.25 -14.18 10.28 84.03 0.86 -13.32 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 22 N -0.94 -55.83 10.09 21.65 0.22 -55.61 16 23 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.12 5.34 6.34 86.47 0.55 5.89 16 28 O -0.37 -12.33 9.90 -148.97 -1.47 -13.81 16 29 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.52 7.06 -2.39 -0.02 2.51 16 34 H 0.21 3.40 5.66 -2.91 -0.02 3.38 16 35 H 0.16 1.23 8.14 -2.38 -0.02 1.22 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.67 4.38 -2.39 -0.01 2.66 16 40 H 0.13 2.14 7.95 -2.39 -0.02 2.13 16 41 H 0.10 2.97 8.01 -2.39 -0.02 2.95 16 42 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.08 4.36 5.88 -2.38 -0.01 4.35 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.01 0.28 6.03 -2.39 -0.01 0.26 16 47 H 0.02 0.98 7.61 -2.39 -0.02 0.96 16 Total: -1.00 -79.72 364.62 2.12 -77.60 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.99 Total: 15.09 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.57 Total: 21.47 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.56 Total: -109.50 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -2.90 Total: -52.75 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -79.72 2.12 -77.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071129930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -79.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds