Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 O 1.21282 * 120.00025 * 240.00552 * 4 2 1 6 6 N 1.34776 * 120.00035 * 59.99666 * 4 2 1 7 7 C 1.47425 * 125.64426 * 359.69833 * 6 4 2 8 8 C 1.55129 * 104.71767 * 155.81650 * 7 6 4 9 9 C 1.55155 * 101.48833 * 37.29270 * 8 7 6 10 10 H 1.09001 * 110.72268 * 205.96501 * 9 8 7 11 11 N 1.46501 * 110.87078 * 82.77007 * 9 8 7 12 12 C 1.36930 * 120.00378 * 91.39310 * 11 9 8 13 13 H 1.08002 * 120.00192 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00313 * 180.02562 * 12 11 9 15 15 N 1.31616 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99989 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47439 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47107 * 120.00342 * 16 14 12 19 19 H 1.48509 * 109.46913 * 239.99398 * 16 14 12 20 20 C 1.47024 * 125.64804 * 180.02562 * 6 4 2 21 21 H 1.08996 * 109.88006 * 300.59487 * 20 6 4 22 22 C 1.52994 * 109.88429 * 61.60664 * 20 6 4 23 23 C 1.50706 * 109.47103 * 119.99653 * 2 1 3 24 24 C 1.38236 * 119.98306 * 59.99816 * 23 2 1 25 25 C 1.38182 * 120.04550 * 179.97438 * 24 23 2 26 26 C 1.38499 * 120.03024 * 0.02682 * 25 24 23 27 27 F 1.35092 * 120.01294 * 179.97438 * 26 25 24 28 28 C 1.38394 * 119.96826 * 0.02562 * 26 25 24 29 29 C 1.38438 * 119.95465 * 359.71823 * 28 26 25 30 30 F 1.35097 * 120.01361 * 180.27861 * 29 28 26 31 31 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 34 34 H 1.09005 * 110.36558 * 274.74008 * 7 6 4 35 35 H 1.08997 * 110.36917 * 37.06650 * 7 6 4 36 36 H 1.09004 * 111.19223 * 279.19029 * 8 7 6 37 37 H 1.09001 * 110.94033 * 155.28977 * 8 7 6 38 38 H 0.96997 * 119.99594 * 271.38474 * 11 9 8 39 39 H 0.96996 * 120.00319 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.47417 * 58.54374 * 22 20 6 41 41 H 1.08994 * 109.47303 * 178.54927 * 22 20 6 42 42 H 1.09009 * 109.47398 * 298.54597 * 22 20 6 43 43 H 1.07998 * 119.97220 * 359.97438 * 24 23 2 44 44 H 1.08004 * 119.98633 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.01881 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 0.8657 0.9283 -2.7336 8 6 1.2940 1.3915 -4.1508 9 6 1.5389 0.0329 -4.8591 10 1 2.2551 0.1458 -5.6730 11 7 0.2808 -0.5324 -5.3530 12 6 -0.1418 -0.2545 -6.6255 13 1 0.4521 0.3817 -7.2649 14 6 -1.3341 -0.7897 -7.0933 15 7 -2.0581 -1.5647 -6.3140 16 14 -1.9109 -0.4100 -8.8290 17 1 -0.9252 0.4787 -9.4950 18 1 -2.0358 -1.6749 -9.5969 19 1 -3.2309 0.2684 -8.7747 20 6 2.1258 -0.8436 -3.7327 21 1 3.2138 -0.8544 -3.7972 22 6 1.5838 -2.2697 -3.8467 23 6 2.0323 -0.7104 1.2306 24 6 1.6981 -2.0338 1.4491 25 6 2.1584 -2.6865 2.5767 26 6 2.9548 -2.0153 3.4895 27 9 3.4042 -2.6536 4.5921 28 6 3.2891 -0.6900 3.2722 29 6 2.8317 -0.0385 2.1396 30 9 3.1620 1.2535 1.9234 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.1888 0.6523 -2.7247 35 1 1.0593 1.7140 -2.0034 36 1 2.2091 1.9825 -4.1124 37 1 0.4927 1.9471 -4.6378 38 1 -0.2527 -1.1036 -4.7787 39 1 -2.8911 -1.9390 -6.6409 40 1 0.4964 -2.2521 -3.7735 41 1 1.8765 -2.6940 -4.8070 42 1 1.9923 -2.8793 -3.0406 43 1 1.0768 -2.5579 0.7379 44 1 1.8971 -3.7207 2.7462 45 1 3.9104 -0.1658 3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075120708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -80.247867 kcal Electronic energy + Delta-G solvation = -29864.810328 eV Core-core repulsion = 25518.759129 eV Total energy + Delta-G solvation = -4346.051199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.25391 -49.22408 -40.47940 -39.04380 -37.40538 -34.50182 -33.85115 -31.58230 -31.02077 -30.81473 -29.46340 -28.56498 -25.44664 -24.84292 -23.67757 -23.44030 -22.85576 -21.47617 -19.76870 -18.53359 -18.47334 -17.75388 -17.40776 -16.54112 -16.39356 -16.15177 -15.83099 -15.56660 -15.51174 -15.07177 -14.69817 -14.53534 -14.29251 -13.96338 -13.79268 -13.33801 -13.24294 -13.09122 -12.88766 -12.57875 -12.40323 -12.31891 -12.06217 -12.00495 -11.72426 -11.43697 -11.30832 -11.29028 -11.01406 -10.94826 -10.80529 -10.62901 -10.24993 -10.06002 -9.67301 -9.50915 -9.26613 -9.01027 -8.82803 -8.35559 -7.07738 -5.86717 -3.16125 0.69702 0.81012 2.77398 3.00346 3.32653 3.37261 3.43727 3.45570 3.62066 4.13010 4.25477 4.31610 4.50530 4.55534 4.66887 4.87088 4.98979 5.02232 5.06438 5.22635 5.38051 5.47189 5.54397 5.56793 5.58878 5.61719 5.65143 5.69095 5.72479 5.79999 5.83057 5.92404 6.02983 6.07242 6.09971 6.30634 6.38499 6.47803 6.52188 6.58193 6.68928 6.83160 6.97927 7.62819 7.78981 8.31337 8.34426 9.43618 9.98309 10.33432 11.35525 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.002578 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.011237 B =10859.387276 C =11223.046851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 H 0.107 0.893 4 C 0.533 3.467 5 O -0.539 6.539 6 N -0.604 5.604 7 C 0.102 3.898 8 C -0.161 4.161 9 C 0.172 3.828 10 H 0.070 0.930 11 N -0.713 5.713 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.126 3.874 21 H 0.070 0.930 22 C -0.148 4.148 23 C -0.104 4.104 24 C -0.026 4.026 25 C -0.162 4.162 26 C 0.126 3.874 27 F -0.134 7.134 28 C -0.195 4.195 29 C 0.135 3.865 30 F -0.130 7.130 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.388 0.612 39 H 0.255 0.745 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 3.644 18.178 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 H 0.125 0.875 4 C 0.320 3.680 5 O -0.417 6.417 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.202 4.202 9 C 0.060 3.940 10 H 0.088 0.912 11 N -0.355 5.355 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.023 3.977 21 H 0.088 0.912 22 C -0.206 4.206 23 C -0.105 4.105 24 C -0.044 4.044 25 C -0.181 4.181 26 C 0.107 3.893 27 F -0.113 7.113 28 C -0.215 4.215 29 C 0.115 3.885 30 F -0.109 7.109 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.843 3.151 18.139 20.012 hybrid contribution -0.403 0.255 -0.573 0.745 sum 7.440 3.405 17.567 19.379 Atomic orbital electron populations 1.21966 0.91265 1.03649 1.03774 1.20161 0.98392 1.00427 0.90084 0.87501 1.19862 0.80469 0.84496 0.83161 1.90689 1.38554 1.26355 1.86085 1.48593 1.50418 1.29572 1.05110 1.22476 0.95180 0.86710 0.97679 1.23574 1.01395 1.00340 0.94889 1.21186 0.90234 0.89925 0.92695 0.91230 1.42555 1.20906 1.57906 1.14159 1.19280 1.03261 1.24899 0.89977 0.90987 1.24740 0.97662 0.99984 0.98227 1.69660 1.15486 1.36863 1.35771 0.86131 0.78349 0.77437 0.84308 1.20531 1.21868 1.21892 1.22025 0.98440 0.94674 0.82589 0.91223 1.21914 1.02053 0.94944 1.01738 1.19464 0.99838 0.95308 0.95916 1.20728 0.96347 0.92307 0.95020 1.21194 1.00376 1.01614 0.94941 1.17285 0.97094 0.90264 0.84701 1.91519 1.87406 1.81566 1.50765 1.20904 1.06220 0.94675 0.99674 1.17057 0.97429 0.79140 0.94858 1.91506 1.90774 1.34011 1.94575 0.90218 0.91556 0.91312 0.90623 0.91633 0.91976 0.89383 0.77539 0.93464 0.91567 0.91529 0.92780 0.83917 0.83952 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.81 37.16 0.33 -1.19 16 2 C -0.07 -0.81 2.23 -92.92 -0.21 -1.02 16 3 H 0.11 1.17 6.84 -51.93 -0.35 0.81 16 4 C 0.53 8.00 6.88 -10.99 -0.08 7.92 16 5 O -0.54 -9.59 14.14 5.56 0.08 -9.51 16 6 N -0.60 -9.13 3.06 -162.88 -0.50 -9.63 16 7 C 0.10 1.40 5.12 -2.41 -0.01 1.39 16 8 C -0.16 -2.44 6.79 -24.46 -0.17 -2.60 16 9 C 0.17 3.10 3.47 -66.10 -0.23 2.87 16 10 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 11 N -0.71 -16.13 4.56 -51.65 -0.24 -16.37 16 12 C -0.24 -6.23 9.96 -15.06 -0.15 -6.38 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 14 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16 16 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.13 2.12 3.43 -66.96 -0.23 1.90 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.15 -2.70 8.51 37.15 0.32 -2.38 16 23 C -0.10 -1.22 4.40 -104.54 -0.46 -1.68 16 24 C -0.03 -0.29 7.92 -39.60 -0.31 -0.60 16 25 C -0.16 -1.63 10.02 -39.51 -0.40 -2.03 16 26 C 0.13 1.31 7.30 -39.43 -0.29 1.03 16 27 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 28 C -0.20 -1.99 10.01 -39.45 -0.39 -2.38 16 29 C 0.13 1.52 7.24 -39.43 -0.29 1.24 16 30 F -0.13 -1.49 16.19 2.25 0.04 -1.46 16 31 H 0.08 0.83 4.98 -51.93 -0.26 0.57 16 32 H 0.07 0.69 7.39 -51.93 -0.38 0.30 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.12 7.08 -51.93 -0.37 0.75 16 35 H 0.07 0.73 7.34 -51.93 -0.38 0.34 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.39 9.43 5.66 -40.82 -0.23 9.20 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.07 1.33 6.20 -51.93 -0.32 1.01 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.98 6.88 -51.92 -0.36 0.62 16 43 H 0.14 1.56 7.51 -52.49 -0.39 1.17 16 44 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -29.30 367.68 -7.98 -37.28 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.98 Total: 9.30 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.66 Total: -4.29 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.01 Total: -51.82 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.30 -7.98 -37.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075120708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.968 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds