Wall clock time and date at job start Tue Mar 31 2020 20:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47322 * 2 1 4 4 C 1.50707 * 109.47248 * 119.99958 * 2 1 3 5 5 O 1.21278 * 119.99295 * 95.10597 * 4 2 1 6 6 N 1.34766 * 120.00150 * 275.10486 * 4 2 1 7 7 C 1.47428 * 125.65191 * 354.84211 * 6 4 2 8 8 C 1.54905 * 104.83573 * 155.83286 * 7 6 4 9 9 C 1.55158 * 101.57990 * 37.01147 * 8 7 6 10 10 H 1.09006 * 110.72126 * 205.95631 * 9 8 7 11 11 N 1.46498 * 110.71946 * 82.85941 * 9 8 7 12 12 C 1.36942 * 120.00033 * 88.84491 * 11 9 8 13 13 H 1.07998 * 119.99674 * 359.97438 * 12 11 9 14 14 C 1.38810 * 119.99889 * 179.97438 * 12 11 9 15 15 N 1.31620 * 120.00166 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47174 * 270.00211 * 16 14 12 18 18 H 1.48500 * 109.47105 * 29.99905 * 16 14 12 19 19 H 1.48498 * 109.47250 * 150.00244 * 16 14 12 20 20 C 1.47486 * 125.59271 * 174.77579 * 6 4 2 21 21 H 1.08999 * 109.96170 * 300.40365 * 20 6 4 22 22 C 1.53001 * 110.03277 * 61.72053 * 20 6 4 23 23 C 1.50698 * 109.47317 * 240.00437 * 2 1 3 24 24 C 1.38232 * 119.98146 * 299.72275 * 23 2 1 25 25 C 1.38188 * 120.04495 * 179.76590 * 24 23 2 26 26 C 1.38493 * 120.02868 * 0.51062 * 25 24 23 27 27 F 1.35102 * 120.01234 * 179.76596 * 26 25 24 28 28 C 1.38401 * 119.97091 * 359.74558 * 26 25 24 29 29 C 1.38433 * 119.95150 * 359.97438 * 28 26 25 30 30 F 1.35101 * 120.01389 * 180.02562 * 29 28 26 31 31 H 1.08997 * 109.47395 * 173.52876 * 1 2 3 32 32 H 1.09003 * 109.46985 * 293.53119 * 1 2 3 33 33 H 1.09002 * 109.46777 * 53.52175 * 1 2 3 34 34 H 1.09007 * 110.36714 * 36.99804 * 7 6 4 35 35 H 1.08996 * 110.45996 * 274.72101 * 7 6 4 36 36 H 1.09002 * 111.01020 * 278.94040 * 8 7 6 37 37 H 1.09002 * 111.04013 * 155.10042 * 8 7 6 38 38 H 0.97000 * 120.00136 * 268.83905 * 11 9 8 39 39 H 0.97001 * 119.99580 * 359.97438 * 15 14 12 40 40 H 1.09002 * 109.46804 * 177.61099 * 22 20 6 41 41 H 1.08996 * 109.46781 * 297.61092 * 22 20 6 42 42 H 1.08995 * 109.47006 * 57.61146 * 22 20 6 43 43 H 1.07997 * 119.97604 * 0.02562 * 24 23 2 44 44 H 1.08004 * 119.98600 * 180.25625 * 25 24 23 45 45 H 1.07997 * 120.02149 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3226 -1.8867 1.1754 6 7 2.1591 -0.0387 2.3919 7 6 1.9465 1.4087 2.5751 8 6 1.5971 1.5715 4.0754 9 6 2.5231 0.5111 4.7277 10 1 2.1084 0.1677 5.6755 11 7 3.8725 1.0484 4.9187 12 6 4.1878 1.7127 6.0740 13 1 3.4415 1.8406 6.8441 14 6 5.4665 2.2214 6.2552 15 7 6.3758 2.0658 5.3165 16 14 5.8964 3.1280 7.8309 17 1 5.6129 4.5760 7.6619 18 1 5.0802 2.5911 8.9493 19 1 7.3376 2.9379 8.1340 20 6 2.5321 -0.6312 3.6900 21 1 1.8072 -1.3945 3.9727 22 6 3.9312 -1.2445 3.6034 23 6 2.0323 -0.7103 -1.2305 24 6 1.7029 -2.0354 -1.4461 25 6 2.1589 -2.6866 -2.5764 26 6 2.9552 -2.0153 -3.4892 27 9 3.4047 -2.6537 -4.5918 28 6 3.2900 -0.6901 -3.2716 29 6 2.8279 -0.0371 -2.1419 30 9 3.1535 1.2567 -1.9285 31 1 -0.3634 -1.0211 -0.1158 32 1 -0.3633 0.4103 0.9422 33 1 -0.3633 0.6110 -0.8264 34 1 1.1195 1.7523 1.9536 35 1 2.8553 1.9606 2.3351 36 1 0.5480 1.3403 4.2597 37 1 1.8419 2.5736 4.4277 38 1 4.5427 0.9337 4.2269 39 1 6.1525 1.5953 4.4982 40 1 4.2146 -1.6418 4.5781 41 1 3.9299 -2.0500 2.8691 42 1 4.6455 -0.4787 3.3015 43 1 1.0853 -2.5608 -0.7327 44 1 1.8975 -3.7207 -2.7460 45 1 3.9112 -0.1660 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075120709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:14 Heat of formation + Delta-G solvation = -98.489165 kcal Electronic energy + Delta-G solvation = -29961.895465 eV Core-core repulsion = 25615.053265 eV Total energy + Delta-G solvation = -4346.842201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.15769 -50.07258 -41.66634 -40.12359 -38.77720 -36.08382 -35.25254 -33.25884 -32.29395 -31.87030 -30.60195 -29.85885 -26.73563 -26.02453 -25.44740 -24.36692 -23.96135 -22.69445 -21.15657 -19.84433 -19.51452 -19.33161 -18.61540 -17.77160 -17.71675 -17.08861 -16.90187 -16.72888 -16.54333 -16.40505 -15.91211 -15.75472 -15.53661 -15.45059 -15.07928 -14.90618 -14.44048 -14.31402 -13.91209 -13.83260 -13.80758 -13.46171 -13.22362 -13.13639 -12.94529 -12.87407 -12.76582 -12.50605 -12.35889 -12.31037 -12.22231 -11.93651 -11.78981 -11.76347 -11.24270 -10.91652 -10.76170 -10.11206 -9.73335 -9.70507 -9.10350 -8.35163 -5.29811 -0.19367 -0.03324 1.51930 1.60403 1.70416 1.83874 1.85659 2.33099 2.72964 2.76767 3.23177 3.32464 3.38342 3.43322 3.57197 3.69362 3.70980 3.82847 3.93586 4.01339 4.09474 4.14543 4.20579 4.22401 4.30315 4.47720 4.61686 4.63173 4.69379 4.73184 4.80807 4.83130 4.85985 4.88185 4.97901 5.00654 5.12903 5.15649 5.21465 5.23704 5.30044 5.36563 5.66099 5.68235 6.49299 6.52073 7.05795 7.10740 8.01029 8.13394 9.15686 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.002785 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.530546 B =10052.640643 C =10440.582434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 H 0.104 0.896 4 C 0.532 3.468 5 O -0.564 6.564 6 N -0.606 5.606 7 C 0.106 3.894 8 C -0.145 4.145 9 C 0.166 3.834 10 H 0.070 0.930 11 N -0.738 5.738 12 C -0.321 4.321 13 H 0.072 0.928 14 C -0.106 4.106 15 N -0.978 5.978 16 Si 1.128 2.872 17 H -0.286 1.286 18 H -0.271 1.271 19 H -0.300 1.300 20 C 0.134 3.866 21 H 0.089 0.911 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.027 4.027 25 C -0.160 4.160 26 C 0.122 3.878 27 F -0.135 7.135 28 C -0.197 4.197 29 C 0.121 3.879 30 F -0.136 7.136 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.362 0.638 39 H 0.241 0.759 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 -5.586 -15.856 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 H 0.122 0.878 4 C 0.321 3.679 5 O -0.444 6.444 6 N -0.340 5.340 7 C -0.016 4.016 8 C -0.185 4.185 9 C 0.056 3.944 10 H 0.088 0.912 11 N -0.381 5.381 12 C -0.453 4.453 13 H 0.090 0.910 14 C -0.297 4.297 15 N -0.627 5.627 16 Si 0.954 3.046 17 H -0.213 1.213 18 H -0.196 1.196 19 H -0.227 1.227 20 C 0.030 3.970 21 H 0.107 0.893 22 C -0.195 4.195 23 C -0.127 4.127 24 C -0.045 4.045 25 C -0.178 4.178 26 C 0.102 3.898 27 F -0.113 7.113 28 C -0.216 4.216 29 C 0.101 3.899 30 F -0.114 7.114 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.196 0.804 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.195 -5.402 -14.973 22.006 hybrid contribution -0.037 -0.556 -1.186 1.310 sum -15.231 -5.958 -16.159 22.991 Atomic orbital electron populations 1.21777 0.88571 1.04153 1.04371 1.20169 1.00257 0.99857 0.88274 0.87750 1.20474 0.77103 0.86719 0.83597 1.90645 1.51625 1.17383 1.84707 1.48751 1.67445 1.09886 1.07869 1.22355 1.01101 0.79828 0.98274 1.23337 1.00424 1.00864 0.93923 1.21372 0.85766 0.91538 0.95693 0.91165 1.42730 1.09075 1.67080 1.19265 1.20390 0.98284 1.30222 0.96364 0.90966 1.27083 0.92612 1.02871 1.07117 1.70980 1.36224 1.46940 1.08510 0.82599 0.75146 0.75198 0.71658 1.21275 1.19644 1.22697 1.21916 0.96004 0.95886 0.83220 0.89313 1.21770 0.96545 0.99788 1.01423 1.19635 1.00969 0.95976 0.96115 1.20917 0.96598 0.91907 0.95058 1.21464 0.99631 1.02586 0.94165 1.17414 0.97164 0.90316 0.84860 1.91524 1.87436 1.81523 1.50831 1.21098 1.05913 0.94902 0.99705 1.17261 0.97966 0.79111 0.95546 1.91508 1.90993 1.34244 1.94690 0.91020 0.90437 0.89300 0.87416 0.93590 0.88403 0.91055 0.80390 0.94906 0.92495 0.92434 0.94924 0.82924 0.81735 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.01 71.98 0.65 -1.24 16 2 C -0.06 -1.37 2.18 -12.29 -0.03 -1.40 16 3 H 0.10 2.23 6.24 -2.38 -0.01 2.21 16 4 C 0.53 15.08 6.77 87.66 0.59 15.68 16 5 O -0.56 -18.87 13.44 -3.02 -0.04 -18.91 16 6 N -0.61 -17.70 3.08 -786.96 -2.42 -20.12 16 7 C 0.11 2.84 6.36 86.85 0.55 3.40 16 8 C -0.14 -4.17 6.77 31.98 0.22 -3.96 16 9 C 0.17 5.99 3.46 46.18 0.16 6.15 16 10 H 0.07 2.52 8.11 -2.38 -0.02 2.50 16 11 N -0.74 -34.86 4.60 -317.32 -1.46 -36.32 16 12 C -0.32 -17.05 9.97 84.03 0.84 -16.21 16 13 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 14 C -0.11 -5.98 5.50 84.86 0.47 -5.51 16 15 N -0.98 -60.77 13.70 21.65 0.30 -60.47 16 16 Si 1.13 50.97 29.92 68.60 2.05 53.02 16 17 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 C 0.13 4.40 3.48 45.25 0.16 4.56 16 21 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 22 C -0.14 -5.21 8.47 71.98 0.61 -4.60 16 23 C -0.13 -2.78 4.65 -19.82 -0.09 -2.88 16 24 C -0.03 -0.54 7.81 22.26 0.17 -0.36 16 25 C -0.16 -2.86 10.02 22.32 0.22 -2.64 16 26 C 0.12 2.41 7.30 22.37 0.16 2.57 16 27 F -0.13 -2.70 17.27 44.97 0.78 -1.93 16 28 C -0.20 -4.00 10.01 22.36 0.22 -3.78 16 29 C 0.12 2.76 7.24 22.37 0.16 2.92 16 30 F -0.14 -3.35 16.19 44.97 0.73 -2.62 16 31 H 0.07 0.98 7.20 -2.39 -0.02 0.96 16 32 H 0.08 1.01 7.56 -2.39 -0.02 0.99 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 2.04 6.79 -2.38 -0.02 2.02 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 38 H 0.36 18.52 4.41 -92.71 -0.41 18.11 16 39 H 0.24 15.07 6.77 -92.71 -0.63 14.44 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.17 6.78 -2.39 -0.02 2.16 16 42 H 0.03 1.39 6.21 -2.39 -0.01 1.38 16 43 H 0.15 2.88 6.85 -2.91 -0.02 2.86 16 44 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 45 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -67.88 368.22 5.76 -62.12 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.76 Total: 32.54 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.07 Total: -7.31 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.59 Total: -116.91 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 1.50 Total: -4.55 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -67.88 5.76 -62.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075120709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.365 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds