Wall clock time and date at job start Tue Mar 31 2020 21:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.64075 * 2 1 4 4 C 1.54327 * 111.00183 * 236.92168 * 2 1 3 5 5 N 1.47029 * 107.26766 * 219.60309 * 4 2 1 6 6 C 1.36939 * 125.65021 * 178.84914 * 5 4 2 7 7 H 1.07997 * 119.99773 * 347.79313 * 6 5 4 8 8 C 1.38811 * 119.99509 * 167.78740 * 6 5 4 9 9 N 1.31613 * 120.00608 * 325.97825 * 8 6 5 10 10 Si 1.86806 * 119.99274 * 145.97884 * 8 6 5 11 11 H 1.48495 * 109.47291 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47063 * 239.99759 * 10 8 6 13 13 H 1.48501 * 109.46672 * 120.00021 * 10 8 6 14 14 C 1.47428 * 108.69861 * 358.58470 * 5 4 2 15 15 C 1.54903 * 104.83505 * 24.35538 * 14 5 4 16 16 H 1.09001 * 111.00122 * 81.06209 * 15 14 5 17 17 N 1.46496 * 111.00769 * 204.87802 * 15 14 5 18 18 C 1.34774 * 119.99870 * 273.54980 * 17 15 14 19 19 O 1.21279 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99936 * 179.97438 * 18 17 15 21 21 C 1.50697 * 109.47546 * 179.97438 * 20 18 17 22 22 C 1.38234 * 120.00264 * 269.72873 * 21 20 18 23 23 C 1.38232 * 120.00259 * 179.80425 * 22 21 20 24 24 C 1.38234 * 119.99957 * 0.42295 * 23 22 21 25 25 C 1.50705 * 120.00134 * 179.78831 * 24 23 22 26 26 F 1.39902 * 109.47006 * 120.02036 * 25 24 23 27 27 F 1.39897 * 109.46912 * 240.01527 * 25 24 23 28 28 C 1.38242 * 120.00042 * 359.80681 * 24 23 22 29 29 C 1.38230 * 119.99950 * 0.02562 * 28 24 23 30 30 H 1.09000 * 109.46907 * 296.86132 * 1 2 3 31 31 H 1.08991 * 109.46970 * 56.85876 * 1 2 3 32 32 H 1.08999 * 109.47123 * 176.86118 * 1 2 3 33 33 H 1.09003 * 109.99553 * 100.12813 * 4 2 1 34 34 H 1.09003 * 109.78069 * 338.95362 * 4 2 1 35 35 H 0.96997 * 119.99747 * 354.25193 * 9 8 6 36 36 H 1.08994 * 110.36433 * 143.19827 * 14 5 4 37 37 H 1.09003 * 110.36298 * 265.51907 * 14 5 4 38 38 H 0.96997 * 120.00030 * 93.54897 * 17 15 14 39 39 H 1.09004 * 109.47388 * 300.00030 * 20 18 17 40 40 H 1.09006 * 109.47384 * 59.99468 * 20 18 17 41 41 H 1.08007 * 119.99845 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00309 * 180.20393 * 23 22 21 43 43 H 1.09001 * 109.47134 * 0.02562 * 25 24 23 44 44 H 1.08003 * 120.00127 * 179.97438 * 28 24 23 45 45 H 1.07994 * 120.00274 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2072 5 7 3.2495 -1.5471 -0.7353 6 6 4.0125 -2.3919 -1.4963 7 1 3.6681 -2.6983 -2.4730 8 6 5.2286 -2.8543 -1.0124 9 7 5.9698 -2.0807 -0.2480 10 14 5.8130 -4.5747 -1.4463 11 1 4.8042 -5.2366 -2.3120 12 1 5.9918 -5.3652 -0.2020 13 1 7.1074 -4.4901 -2.1693 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7933 1.2152 16 1 1.4470 -1.6529 1.4384 17 7 2.2175 0.0720 2.3891 18 6 2.3110 -0.4708 3.6191 19 8 2.2800 -1.6756 3.7543 20 6 2.4540 0.4194 4.8267 21 6 2.5370 -0.4291 6.0693 22 6 1.3842 -0.7702 6.7516 23 6 1.4600 -1.5519 7.8892 24 6 2.6893 -1.9851 8.3495 25 6 2.7724 -2.8333 9.5924 26 9 3.3610 -4.0632 9.2792 27 9 3.5478 -2.1767 10.5541 28 6 3.8426 -1.6400 7.6699 29 6 3.7666 -0.8612 6.5304 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3849 -0.0961 -1.9951 34 1 1.3217 -1.4702 -1.5822 35 1 5.7079 -1.1601 -0.0907 36 1 3.7993 -2.1363 1.2218 37 1 4.1930 -0.4409 0.8030 38 1 2.2419 1.0357 2.2811 39 1 3.3612 1.0164 4.7327 40 1 1.5898 1.0802 4.8954 41 1 0.4240 -0.4283 6.3943 42 1 0.5591 -1.8212 8.4204 43 1 1.7697 -3.0002 9.9861 44 1 4.8032 -1.9781 8.0297 45 1 4.6675 -0.5913 5.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080119073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:44 Heat of formation + Delta-G solvation = -96.807056 kcal Electronic energy + Delta-G solvation = -28817.855573 eV Core-core repulsion = 24471.086314 eV Total energy + Delta-G solvation = -4346.769259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.18337 -47.17017 -40.16899 -39.13357 -37.66941 -34.13238 -33.57868 -32.81166 -31.22615 -30.40719 -29.50306 -27.66637 -25.56278 -25.22455 -23.55328 -23.08557 -21.60852 -20.61649 -20.22994 -19.59087 -17.76669 -17.57447 -17.52714 -17.40062 -16.88838 -16.29816 -15.65141 -15.42826 -14.68715 -14.62558 -14.34534 -14.13977 -14.03755 -13.69409 -13.65444 -13.54625 -13.41125 -13.14873 -13.00266 -12.93951 -12.67848 -12.47918 -12.21351 -12.03220 -11.79307 -11.52673 -11.27222 -11.08501 -10.86750 -10.69726 -10.63480 -10.42914 -10.09953 -9.99238 -9.76131 -9.65655 -9.14011 -9.01659 -8.70021 -8.30800 -6.96074 -6.14278 -3.07295 0.87616 1.19199 2.79932 3.17808 3.48670 3.55171 3.59661 3.61614 3.73000 3.91771 4.27840 4.47546 4.61716 4.64690 4.73224 4.82210 4.84958 5.01009 5.07759 5.15626 5.17271 5.25169 5.28981 5.30951 5.40510 5.62115 5.63631 5.77027 5.79678 5.84476 5.96718 6.03180 6.05810 6.14610 6.19910 6.27578 6.34569 6.56202 6.59233 6.68135 6.78669 6.98459 7.07774 7.69339 7.80715 8.41407 8.50296 9.01058 9.83133 10.37256 11.20399 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002758 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.786307 B =10150.664361 C =11884.525534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.601 5.601 6 C -0.346 4.346 7 H 0.068 0.932 8 C -0.020 4.020 9 N -0.906 5.906 10 Si 1.060 2.940 11 H -0.291 1.291 12 H -0.289 1.289 13 H -0.295 1.295 14 C 0.142 3.858 15 C 0.131 3.869 16 H 0.093 0.907 17 N -0.717 5.717 18 C 0.512 3.488 19 O -0.526 6.526 20 C -0.107 4.107 21 C -0.038 4.038 22 C -0.109 4.109 23 C -0.085 4.085 24 C -0.176 4.176 25 C 0.314 3.686 26 F -0.199 7.199 27 F -0.202 7.202 28 C -0.076 4.076 29 C -0.104 4.104 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.396 0.604 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 8.562 17.332 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.328 5.328 6 C -0.473 4.473 7 H 0.086 0.914 8 C -0.222 4.222 9 N -0.546 5.546 10 Si 0.889 3.111 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.222 1.222 14 C 0.015 3.985 15 C 0.026 3.974 16 H 0.111 0.889 17 N -0.368 5.368 18 C 0.297 3.703 19 O -0.401 6.401 20 C -0.147 4.147 21 C -0.039 4.039 22 C -0.127 4.127 23 C -0.104 4.104 24 C -0.176 4.176 25 C 0.260 3.740 26 F -0.180 7.180 27 F -0.183 7.183 28 C -0.094 4.094 29 C -0.122 4.122 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.230 0.770 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.629 6.457 17.628 21.573 hybrid contribution -0.955 1.616 -0.475 1.936 sum -11.583 8.072 17.153 22.216 Atomic orbital electron populations 1.21730 0.94626 1.02037 1.01054 1.22418 0.95506 0.99193 0.95815 0.90677 1.21356 0.90532 0.93005 0.93560 1.44479 1.31837 1.51513 1.05018 1.19694 1.01997 1.23141 1.02444 0.91395 1.25662 0.91921 1.05086 0.99574 1.70738 1.35269 1.07697 1.40866 0.83647 0.75095 0.76362 0.75972 1.21740 1.21555 1.22244 1.21762 0.92107 0.98878 0.85770 1.22370 0.99304 0.92840 0.82910 0.88894 1.45909 1.74787 1.10032 1.06106 1.20356 0.76762 0.89151 0.84053 1.90773 1.48471 1.14903 1.85932 1.20752 1.05399 0.97765 0.90797 1.19449 0.93531 0.96614 0.94304 1.20934 0.98043 0.98582 0.95152 1.20824 0.96143 0.96893 0.96499 1.20288 0.95447 1.03442 0.98461 1.20388 0.91657 0.76852 0.85074 1.93032 1.86696 1.44755 1.93536 1.93005 1.78506 1.81482 1.65340 1.20923 0.97824 0.96047 0.94653 1.21056 0.97721 0.97575 0.95860 0.93001 0.92640 0.92392 0.95759 0.95221 0.92182 0.92567 0.95882 0.77014 0.87598 0.87822 0.85458 0.85354 0.86631 0.85439 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.17 37.16 0.34 -1.38 16 2 C -0.11 -1.74 3.15 -88.78 -0.28 -2.02 16 3 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.90 6.85 -3.06 -0.02 2.88 16 5 N -0.60 -15.49 3.33 -170.07 -0.57 -16.05 16 6 C -0.35 -9.99 9.97 -15.06 -0.15 -10.14 16 7 H 0.07 1.96 8.02 -52.49 -0.42 1.54 16 8 C -0.02 -0.59 4.95 -17.43 -0.09 -0.67 16 9 N -0.91 -27.94 12.87 55.49 0.71 -27.23 16 10 Si 1.06 26.30 30.03 -169.99 -5.10 21.20 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.14 3.38 5.03 -2.53 -0.01 3.37 16 15 C 0.13 2.36 2.76 -65.79 -0.18 2.18 16 16 H 0.09 1.86 7.64 -51.93 -0.40 1.47 16 17 N -0.72 -10.05 5.23 -51.73 -0.27 -10.33 16 18 C 0.51 7.58 7.82 -10.99 -0.09 7.49 16 19 O -0.53 -10.47 15.78 5.56 0.09 -10.38 16 20 C -0.11 -1.06 5.83 -29.04 -0.17 -1.23 16 21 C -0.04 -0.44 4.37 -104.62 -0.46 -0.90 16 22 C -0.11 -1.13 9.70 -39.59 -0.38 -1.51 16 23 C -0.09 -0.82 9.67 -39.59 -0.38 -1.20 16 24 C -0.18 -1.90 5.37 -104.62 -0.56 -2.46 16 25 C 0.31 2.95 5.45 36.01 0.20 3.15 16 26 F -0.20 -2.37 17.26 2.25 0.04 -2.33 16 27 F -0.20 -2.15 17.26 2.25 0.04 -2.11 16 28 C -0.08 -0.91 9.60 -39.58 -0.38 -1.29 16 29 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.61 7.78 -51.93 -0.40 0.20 16 35 H 0.27 8.24 6.45 -40.82 -0.26 7.98 16 36 H 0.06 1.58 7.82 -51.93 -0.41 1.17 16 37 H 0.02 0.58 7.03 -51.93 -0.36 0.22 16 38 H 0.40 4.13 8.52 -40.82 -0.35 3.78 16 39 H 0.11 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.13 0.81 7.95 -52.49 -0.42 0.40 16 43 H 0.12 0.65 7.88 -51.93 -0.41 0.25 16 44 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -36.37 382.40 -8.74 -45.10 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.44 Total: 1.76 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.00 Total: -5.39 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.12 Total: -53.61 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.10 Total: 21.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.37 -8.74 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080119073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.702 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds