Wall clock time and date at job start Tue Mar 31 2020 21:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.64075 * 2 1 4 4 C 1.54327 * 111.00183 * 236.92168 * 2 1 3 5 5 N 1.47029 * 107.26766 * 219.60309 * 4 2 1 6 6 C 1.36939 * 125.65021 * 178.84914 * 5 4 2 7 7 H 1.07997 * 119.99773 * 347.79313 * 6 5 4 8 8 C 1.38811 * 119.99509 * 167.78740 * 6 5 4 9 9 N 1.31613 * 120.00608 * 325.97825 * 8 6 5 10 10 Si 1.86806 * 119.99274 * 145.97884 * 8 6 5 11 11 H 1.48495 * 109.47291 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47063 * 239.99759 * 10 8 6 13 13 H 1.48501 * 109.46672 * 120.00021 * 10 8 6 14 14 C 1.47428 * 108.69861 * 358.58470 * 5 4 2 15 15 C 1.54903 * 104.83505 * 24.35538 * 14 5 4 16 16 H 1.09001 * 111.00122 * 81.06209 * 15 14 5 17 17 N 1.46496 * 111.00769 * 204.87802 * 15 14 5 18 18 C 1.34774 * 119.99870 * 273.54980 * 17 15 14 19 19 O 1.21279 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99936 * 179.97438 * 18 17 15 21 21 C 1.50697 * 109.47546 * 179.97438 * 20 18 17 22 22 C 1.38234 * 120.00264 * 269.72873 * 21 20 18 23 23 C 1.38232 * 120.00259 * 179.80425 * 22 21 20 24 24 C 1.38234 * 119.99957 * 0.42295 * 23 22 21 25 25 C 1.50705 * 120.00134 * 179.78831 * 24 23 22 26 26 F 1.39902 * 109.47006 * 120.02036 * 25 24 23 27 27 F 1.39897 * 109.46912 * 240.01527 * 25 24 23 28 28 C 1.38242 * 120.00042 * 359.80681 * 24 23 22 29 29 C 1.38230 * 119.99950 * 0.02562 * 28 24 23 30 30 H 1.09000 * 109.46907 * 296.86132 * 1 2 3 31 31 H 1.08991 * 109.46970 * 56.85876 * 1 2 3 32 32 H 1.08999 * 109.47123 * 176.86118 * 1 2 3 33 33 H 1.09003 * 109.99553 * 100.12813 * 4 2 1 34 34 H 1.09003 * 109.78069 * 338.95362 * 4 2 1 35 35 H 0.96997 * 119.99747 * 354.25193 * 9 8 6 36 36 H 1.08994 * 110.36433 * 143.19827 * 14 5 4 37 37 H 1.09003 * 110.36298 * 265.51907 * 14 5 4 38 38 H 0.96997 * 120.00030 * 93.54897 * 17 15 14 39 39 H 1.09004 * 109.47388 * 300.00030 * 20 18 17 40 40 H 1.09006 * 109.47384 * 59.99468 * 20 18 17 41 41 H 1.08007 * 119.99845 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.00309 * 180.20393 * 23 22 21 43 43 H 1.09001 * 109.47134 * 0.02562 * 25 24 23 44 44 H 1.08003 * 120.00127 * 179.97438 * 28 24 23 45 45 H 1.07994 * 120.00274 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2072 5 7 3.2495 -1.5471 -0.7353 6 6 4.0125 -2.3919 -1.4963 7 1 3.6681 -2.6983 -2.4730 8 6 5.2286 -2.8543 -1.0124 9 7 5.9698 -2.0807 -0.2480 10 14 5.8130 -4.5747 -1.4463 11 1 4.8042 -5.2366 -2.3120 12 1 5.9918 -5.3652 -0.2020 13 1 7.1074 -4.4901 -2.1693 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7933 1.2152 16 1 1.4470 -1.6529 1.4384 17 7 2.2175 0.0720 2.3891 18 6 2.3110 -0.4708 3.6191 19 8 2.2800 -1.6756 3.7543 20 6 2.4540 0.4194 4.8267 21 6 2.5370 -0.4291 6.0693 22 6 1.3842 -0.7702 6.7516 23 6 1.4600 -1.5519 7.8892 24 6 2.6893 -1.9851 8.3495 25 6 2.7724 -2.8333 9.5924 26 9 3.3610 -4.0632 9.2792 27 9 3.5478 -2.1767 10.5541 28 6 3.8426 -1.6400 7.6699 29 6 3.7666 -0.8612 6.5304 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3849 -0.0961 -1.9951 34 1 1.3217 -1.4702 -1.5822 35 1 5.7079 -1.1601 -0.0907 36 1 3.7993 -2.1363 1.2218 37 1 4.1930 -0.4409 0.8030 38 1 2.2419 1.0357 2.2811 39 1 3.3612 1.0164 4.7327 40 1 1.5898 1.0802 4.8954 41 1 0.4240 -0.4283 6.3943 42 1 0.5591 -1.8212 8.4204 43 1 1.7697 -3.0002 9.9861 44 1 4.8032 -1.9781 8.0297 45 1 4.6675 -0.5913 5.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080119073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:43 Heat of formation + Delta-G solvation = -120.368852 kcal Electronic energy + Delta-G solvation = -28818.877290 eV Core-core repulsion = 24471.086314 eV Total energy + Delta-G solvation = -4347.790975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.98165 -47.98827 -41.29340 -40.21662 -39.14892 -35.85442 -34.56122 -34.27191 -32.19175 -32.02174 -30.57869 -29.13686 -27.25416 -26.21015 -25.13839 -23.88614 -22.80265 -21.99688 -21.67517 -20.91320 -19.62241 -18.55050 -18.33431 -18.20679 -18.05330 -17.60117 -16.69100 -16.41039 -16.34981 -15.76617 -15.60888 -15.51509 -15.27241 -15.04645 -14.93722 -14.53787 -14.46238 -14.38722 -14.37655 -14.08099 -13.81701 -13.52836 -13.43737 -13.04018 -12.98506 -12.78835 -12.72393 -12.53450 -12.17353 -12.10791 -12.04127 -11.91708 -11.83917 -11.70628 -11.59234 -11.01636 -10.50478 -10.11495 -9.95038 -9.86514 -9.09036 -8.45372 -5.33691 0.05098 0.37906 1.51066 1.59478 1.63703 1.76163 2.08596 2.57641 2.68717 2.77429 3.09741 3.25219 3.49348 3.54034 3.56846 3.64397 3.86377 3.92086 3.95506 4.00119 4.03187 4.08228 4.32267 4.35822 4.40918 4.46338 4.52936 4.56900 4.64542 4.78613 4.85107 4.92552 4.96146 5.01209 5.03287 5.05569 5.17845 5.25601 5.33712 5.36877 5.52668 5.52780 5.63342 5.89881 6.23837 6.57629 6.82068 7.29603 7.64842 8.22817 8.89441 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002758 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.786307 B =10150.664361 C =11884.525534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 H 0.100 0.900 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.354 4.354 7 H 0.064 0.936 8 C -0.076 4.076 9 N -0.935 5.935 10 Si 1.109 2.891 11 H -0.270 1.270 12 H -0.295 1.295 13 H -0.284 1.284 14 C 0.151 3.849 15 C 0.150 3.850 16 H 0.072 0.928 17 N -0.703 5.703 18 C 0.508 3.492 19 O -0.583 6.583 20 C -0.095 4.095 21 C -0.055 4.055 22 C -0.115 4.115 23 C -0.083 4.083 24 C -0.187 4.187 25 C 0.310 3.690 26 F -0.218 7.218 27 F -0.212 7.212 28 C -0.101 4.101 29 C -0.128 4.128 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.254 0.746 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.419 0.581 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 10.211 17.926 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.109 4.109 3 H 0.118 0.882 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.482 4.482 7 H 0.082 0.918 8 C -0.272 4.272 9 N -0.576 5.576 10 Si 0.933 3.067 11 H -0.194 1.194 12 H -0.222 1.222 13 H -0.211 1.211 14 C 0.024 3.976 15 C 0.043 3.957 16 H 0.091 0.909 17 N -0.355 5.355 18 C 0.296 3.704 19 O -0.462 6.462 20 C -0.134 4.134 21 C -0.056 4.056 22 C -0.132 4.132 23 C -0.101 4.101 24 C -0.188 4.188 25 C 0.257 3.743 26 F -0.199 7.199 27 F -0.193 7.193 28 C -0.119 4.119 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.025 0.975 38 H 0.257 0.743 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.708 8.175 18.208 24.213 hybrid contribution -0.021 1.114 -0.676 1.303 sum -13.728 9.289 17.532 24.127 Atomic orbital electron populations 1.21693 0.91317 1.02127 1.03479 1.22360 0.97930 0.98980 0.91625 0.88167 1.21629 0.88752 0.93128 0.95824 1.44754 1.32582 1.52180 1.05823 1.19966 1.02080 1.23540 1.02631 0.91776 1.27013 0.92701 1.07836 0.99700 1.70853 1.36320 1.07388 1.43077 0.82989 0.75659 0.72147 0.75879 1.19438 1.22178 1.21111 1.21594 0.95265 0.95832 0.84923 1.21855 0.94964 0.93596 0.85241 0.90939 1.45714 1.74239 1.10761 1.04831 1.21287 0.74885 0.89004 0.85205 1.90757 1.50908 1.17767 1.86765 1.20795 1.08339 0.96956 0.87278 1.19710 0.93613 0.97188 0.95083 1.21350 0.98642 0.98153 0.95101 1.21284 0.96876 0.95653 0.96243 1.20578 0.95636 1.03609 0.98979 1.20872 0.93185 0.75702 0.84561 1.92992 1.87246 1.45936 1.93716 1.92982 1.79078 1.81660 1.65568 1.21067 0.98511 0.96967 0.95377 1.21194 0.98384 0.98589 0.96417 0.90343 0.90441 0.93517 0.95625 0.94939 0.93636 0.98337 0.97506 0.74347 0.85672 0.83338 0.82823 0.81579 0.81972 0.86071 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.17 71.98 0.66 -2.08 16 2 C -0.09 -2.62 3.15 -9.60 -0.03 -2.65 16 3 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 4 C 0.13 5.32 6.85 86.73 0.59 5.91 16 5 N -0.63 -33.16 3.33 -691.97 -2.30 -35.46 16 6 C -0.35 -21.06 9.97 84.03 0.84 -20.22 16 7 H 0.06 3.77 8.02 -2.91 -0.02 3.74 16 8 C -0.08 -4.59 4.95 84.86 0.42 -4.17 16 9 N -0.93 -60.17 12.87 21.65 0.28 -59.89 16 10 Si 1.11 54.49 30.03 68.60 2.06 56.55 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 C 0.15 7.52 5.03 86.85 0.44 7.96 16 15 C 0.15 5.37 2.76 46.38 0.13 5.50 16 16 H 0.07 2.94 7.64 -2.39 -0.02 2.92 16 17 N -0.70 -18.51 5.23 -435.98 -2.28 -20.80 16 18 C 0.51 14.53 7.82 87.66 0.69 15.22 16 19 O -0.58 -23.72 15.78 -3.03 -0.05 -23.77 16 20 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 21 C -0.06 -1.21 4.37 -19.86 -0.09 -1.29 16 22 C -0.11 -2.07 9.70 22.27 0.22 -1.85 16 23 C -0.08 -1.37 9.67 22.27 0.22 -1.16 16 24 C -0.19 -3.89 5.37 -19.86 -0.11 -4.00 16 25 C 0.31 5.44 5.45 71.24 0.39 5.83 16 26 F -0.22 -5.17 17.26 44.97 0.78 -4.39 16 27 F -0.21 -4.37 17.26 44.97 0.78 -3.59 16 28 C -0.10 -2.52 9.60 22.27 0.21 -2.30 16 29 C -0.13 -3.22 9.70 22.27 0.22 -3.00 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.03 1.30 7.78 -2.39 -0.02 1.28 16 35 H 0.25 16.49 6.45 -92.71 -0.60 15.89 16 36 H 0.00 -0.12 7.82 -2.39 -0.02 -0.13 16 37 H 0.01 0.38 7.03 -2.39 -0.02 0.36 16 38 H 0.42 7.30 8.52 -92.71 -0.79 6.51 16 39 H 0.13 1.72 8.09 -2.38 -0.02 1.70 16 40 H 0.15 1.26 8.08 -2.38 -0.02 1.24 16 41 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.17 1.39 7.95 -2.91 -0.02 1.36 16 43 H 0.16 1.32 7.88 -2.39 -0.02 1.30 16 44 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -86.62 382.40 4.61 -82.01 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.39 Total: 13.12 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.96 Total: -3.78 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.30 Total: -116.14 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 9 Polarization: -9.54 SS G_CDS: 1.55 Total: -7.99 kcal Atomic # 14 Polarization: 54.49 SS G_CDS: 2.06 Total: 56.55 kcal Total: -86.62 4.61 -82.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080119073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.358 kcal (2) G-P(sol) polarization free energy of solvation -86.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds