Wall clock time and date at job start Tue Mar 31 2020 21:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47124 * 2 1 4 4 C 1.50701 * 109.47271 * 119.99900 * 2 1 3 5 5 O 1.21284 * 120.00387 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99955 * 300.00062 * 4 2 1 7 7 C 1.46499 * 120.00406 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.87921 * 31.11488 * 7 6 4 9 9 C 1.54907 * 111.00254 * 267.19794 * 7 6 4 10 10 N 1.47426 * 104.83059 * 204.91081 * 9 7 6 11 11 C 1.36942 * 125.65092 * 204.17105 * 10 9 7 12 12 H 1.07992 * 119.99668 * 161.46941 * 11 10 9 13 13 C 1.38811 * 119.99666 * 341.46709 * 11 10 9 14 14 N 1.31621 * 119.99450 * 157.63815 * 13 11 10 15 15 Si 1.86798 * 120.00328 * 337.64106 * 13 11 10 16 16 H 1.48498 * 109.47257 * 84.53524 * 15 13 11 17 17 H 1.48503 * 109.47225 * 204.53615 * 15 13 11 18 18 H 1.48504 * 109.47190 * 324.53501 * 15 13 11 19 19 C 1.47024 * 108.69937 * 24.12865 * 10 9 7 20 20 C 1.54317 * 107.27477 * 358.94009 * 19 10 9 21 21 H 1.08999 * 110.72071 * 96.16617 * 20 19 10 22 22 C 1.53001 * 110.87247 * 219.37620 * 20 19 10 23 23 C 1.50696 * 109.46859 * 239.99725 * 2 1 3 24 24 C 1.38229 * 119.99145 * 300.01716 * 23 2 1 25 25 C 1.38186 * 120.05313 * 180.02562 * 24 23 2 26 26 C 1.38496 * 120.02462 * 359.95826 * 25 24 23 27 27 F 1.35106 * 120.00880 * 180.02562 * 26 25 24 28 28 C 1.38395 * 119.97406 * 0.02562 * 26 25 24 29 29 C 1.38442 * 119.95064 * 359.97438 * 28 26 25 30 30 F 1.35097 * 120.00856 * 179.72242 * 29 28 26 31 31 H 1.09002 * 109.47375 * 60.00210 * 1 2 3 32 32 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46776 * 300.00243 * 1 2 3 34 34 H 0.97009 * 119.99755 * 359.97438 * 6 4 2 35 35 H 1.09001 * 110.36878 * 323.74903 * 9 7 6 36 36 H 1.08998 * 110.37129 * 86.07680 * 9 7 6 37 37 H 0.97000 * 119.99576 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.87848 * 239.51972 * 19 10 9 39 39 H 1.09004 * 110.00667 * 118.42891 * 19 10 9 40 40 H 1.09006 * 109.46905 * 173.61111 * 22 20 19 41 41 H 1.09006 * 109.46607 * 293.60450 * 22 20 19 42 42 H 1.08990 * 109.46993 * 53.60758 * 22 20 19 43 43 H 1.08001 * 119.97431 * 359.97438 * 24 23 2 44 44 H 1.08001 * 119.98781 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.01866 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9407 3.6508 8 1 3.1647 -1.4016 3.4648 9 6 1.1665 -1.9889 4.1448 10 7 1.4479 -2.1446 5.5835 11 6 1.1473 -3.2451 6.3411 12 1 1.6422 -3.4000 7.2883 13 6 0.2064 -4.1612 5.8913 14 7 0.2189 -5.3954 6.3485 15 14 -1.0773 -3.6426 4.6373 16 1 -0.5082 -3.7561 3.2704 17 1 -2.2668 -4.5241 4.7531 18 1 -1.4775 -2.2353 4.8917 19 6 2.1057 -0.9230 6.0701 20 6 2.2612 0.0256 4.8629 21 1 1.4421 0.7439 4.8288 22 6 3.6098 0.7469 4.9066 23 6 2.0323 -0.7105 -1.2304 24 6 1.6979 -2.0337 -1.4491 25 6 2.1582 -2.6866 -2.5767 26 6 2.9545 -2.0153 -3.4895 27 9 3.4040 -2.6538 -4.5921 28 6 3.2897 -0.6904 -3.2718 29 6 2.8280 -0.0373 -2.1418 30 9 3.1590 1.2545 -1.9253 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.1494 0.5391 2.5436 35 1 0.1505 -1.6239 3.9942 36 1 1.3111 -2.9362 3.6253 37 1 -0.4388 -6.0356 6.0345 38 1 3.0863 -1.1676 6.4782 39 1 1.4926 -0.4495 6.8370 40 1 3.7443 1.3217 3.9903 41 1 3.6345 1.4193 5.7643 42 1 4.4112 0.0137 4.9965 43 1 1.0771 -2.5581 -0.7377 44 1 1.8966 -3.7207 -2.7463 45 1 3.9110 -0.1663 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080972579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:09 Heat of formation + Delta-G solvation = -78.802965 kcal Electronic energy + Delta-G solvation = -29760.438186 eV Core-core repulsion = 25414.449643 eV Total energy + Delta-G solvation = -4345.988543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.31337 -49.24205 -40.41853 -38.98439 -37.79165 -34.44876 -34.06409 -32.69115 -31.07287 -31.04809 -29.50290 -27.99511 -26.19393 -25.10098 -23.70682 -23.31878 -22.26826 -20.92146 -20.41125 -19.56031 -18.52549 -17.73833 -17.06132 -16.87831 -16.49156 -16.19777 -15.96205 -15.65157 -15.55729 -15.23279 -14.87818 -14.72871 -14.34933 -14.11579 -13.92723 -13.42146 -13.25589 -13.11870 -13.09179 -12.94553 -12.65238 -12.25380 -12.22931 -12.08933 -11.94194 -11.85382 -11.54813 -11.45906 -11.28647 -11.17840 -10.70296 -10.48141 -10.33095 -10.02406 -9.74957 -9.48373 -9.30518 -8.88265 -8.87473 -8.64354 -7.07319 -5.96170 -3.26850 0.65121 0.77370 2.63945 2.95984 3.30341 3.34706 3.43576 3.46697 3.58076 4.05188 4.17144 4.28030 4.52439 4.54218 4.67338 4.81106 4.81818 4.85357 4.98256 5.01550 5.14535 5.20375 5.30677 5.44954 5.48896 5.52572 5.58993 5.65082 5.69745 5.72495 5.76479 5.84536 5.86627 5.95508 6.00957 6.10896 6.24505 6.38119 6.48463 6.51406 6.59594 6.73252 6.77287 7.55361 7.68447 8.26191 8.29825 8.81311 9.67059 10.14238 11.19920 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.003360 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.571191 B = 8331.677352 C = 9488.824861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.110 0.890 4 C 0.516 3.484 5 O -0.526 6.526 6 N -0.715 5.715 7 C 0.133 3.867 8 H 0.103 0.897 9 C 0.106 3.894 10 N -0.607 5.607 11 C -0.243 4.243 12 H 0.094 0.906 13 C 0.023 3.977 14 N -0.906 5.906 15 Si 0.882 3.118 16 H -0.285 1.285 17 H -0.302 1.302 18 H -0.278 1.278 19 C 0.141 3.859 20 C -0.111 4.111 21 H 0.077 0.923 22 C -0.138 4.138 23 C -0.108 4.108 24 C -0.027 4.027 25 C -0.161 4.161 26 C 0.128 3.872 27 F -0.133 7.133 28 C -0.195 4.195 29 C 0.135 3.865 30 F -0.131 7.131 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.263 0.737 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 15.364 -17.986 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.128 0.872 4 C 0.301 3.699 5 O -0.402 6.402 6 N -0.366 5.366 7 C 0.028 3.972 8 H 0.121 0.879 9 C -0.020 4.020 10 N -0.334 5.334 11 C -0.370 4.370 12 H 0.111 0.889 13 C -0.175 4.175 14 N -0.550 5.550 15 Si 0.712 3.288 16 H -0.212 1.212 17 H -0.230 1.230 18 H -0.204 1.204 19 C 0.015 3.985 20 C -0.131 4.131 21 H 0.096 0.904 22 C -0.195 4.195 23 C -0.109 4.109 24 C -0.045 4.045 25 C -0.180 4.180 26 C 0.109 3.891 27 F -0.112 7.112 28 C -0.214 4.214 29 C 0.116 3.884 30 F -0.109 7.109 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.087 14.419 -18.005 23.273 hybrid contribution -0.947 0.693 -0.779 1.408 sum 2.141 15.112 -18.784 24.203 Atomic orbital electron populations 1.21832 0.91318 1.03637 1.03253 1.20221 0.98238 1.00617 0.90349 0.87165 1.20295 0.80494 0.84747 0.84330 1.90755 1.37292 1.25653 1.86460 1.45905 1.53472 1.31705 1.05487 1.22368 0.99236 0.93112 0.82483 0.87908 1.22253 0.95403 0.97718 0.86664 1.44649 1.70800 1.14614 1.03300 1.18638 1.18381 0.96176 1.03813 0.88871 1.24993 0.98786 0.95478 0.98269 1.69847 1.36546 1.02190 1.46383 0.86972 0.82509 0.77640 0.81641 1.21204 1.23010 1.20367 1.21411 0.96877 0.86507 0.93680 1.22458 0.98182 0.96868 0.95571 0.90444 1.21733 0.96413 1.00165 1.01210 1.19402 1.00349 0.95300 0.95853 1.20755 0.96344 0.92306 0.95056 1.21219 1.00223 1.01690 0.94851 1.17299 0.96897 0.90253 0.84672 1.91529 1.87370 1.81560 1.50696 1.20907 1.06114 0.94644 0.99780 1.17031 0.97448 0.79073 0.94878 1.91502 1.90769 1.34059 1.94570 0.91009 0.91388 0.91143 0.76798 0.95576 0.91953 0.92677 0.94410 0.94812 0.92963 0.92473 0.92231 0.83891 0.83834 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.90 37.16 0.33 -0.87 16 2 C -0.07 -0.75 2.88 -92.92 -0.27 -1.02 16 3 H 0.11 0.96 7.12 -51.93 -0.37 0.59 16 4 C 0.52 7.26 7.02 -10.98 -0.08 7.18 16 5 O -0.53 -9.57 14.75 5.55 0.08 -9.49 16 6 N -0.71 -9.50 5.09 -51.73 -0.26 -9.76 16 7 C 0.13 2.24 2.87 -65.79 -0.19 2.05 16 8 H 0.10 1.92 7.45 -51.93 -0.39 1.53 16 9 C 0.11 2.31 4.39 -2.53 -0.01 2.30 16 10 N -0.61 -14.57 3.21 -170.07 -0.55 -15.12 16 11 C -0.24 -6.92 10.57 -15.06 -0.16 -7.08 16 12 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 13 C 0.02 0.69 5.43 -17.43 -0.09 0.59 16 14 N -0.91 -28.14 13.97 55.49 0.78 -27.37 16 15 Si 0.88 22.64 24.27 -169.99 -4.13 18.52 16 16 H -0.29 -7.16 6.49 56.52 0.37 -6.79 16 17 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 18 H -0.28 -6.92 6.66 56.52 0.38 -6.55 16 19 C 0.14 2.67 6.84 -3.07 -0.02 2.65 16 20 C -0.11 -1.63 3.19 -88.79 -0.28 -1.91 16 21 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 22 C -0.14 -1.65 9.17 37.16 0.34 -1.31 16 23 C -0.11 -1.21 4.40 -104.55 -0.46 -1.67 16 24 C -0.03 -0.30 7.93 -39.60 -0.31 -0.62 16 25 C -0.16 -1.68 10.03 -39.51 -0.40 -2.07 16 26 C 0.13 1.35 7.30 -39.43 -0.29 1.06 16 27 F -0.13 -1.43 17.27 2.25 0.04 -1.39 16 28 C -0.19 -1.95 10.01 -39.45 -0.39 -2.34 16 29 C 0.14 1.46 7.24 -39.43 -0.29 1.17 16 30 F -0.13 -1.39 16.19 2.25 0.04 -1.35 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.63 7.39 -51.93 -0.38 0.25 16 33 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.40 3.97 7.99 -40.82 -0.33 3.64 16 35 H 0.03 0.58 5.58 -51.93 -0.29 0.29 16 36 H 0.06 1.55 6.63 -51.93 -0.34 1.20 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.14 1.65 7.51 -52.49 -0.39 1.26 16 44 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -33.66 369.30 -7.29 -40.95 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.28 Total: 1.32 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.57 Total: -1.87 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.03 Total: -52.25 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.66 -7.29 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080972579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.852 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds