Wall clock time and date at job start Tue Mar 31 2020 21:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47124 * 2 1 4 4 C 1.50701 * 109.47271 * 119.99900 * 2 1 3 5 5 O 1.21284 * 120.00387 * 119.99668 * 4 2 1 6 6 N 1.34780 * 119.99955 * 300.00062 * 4 2 1 7 7 C 1.46499 * 120.00406 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.87921 * 31.11488 * 7 6 4 9 9 C 1.54907 * 111.00254 * 267.19794 * 7 6 4 10 10 N 1.47426 * 104.83059 * 204.91081 * 9 7 6 11 11 C 1.36942 * 125.65092 * 204.17105 * 10 9 7 12 12 H 1.07992 * 119.99668 * 161.46941 * 11 10 9 13 13 C 1.38811 * 119.99666 * 341.46709 * 11 10 9 14 14 N 1.31621 * 119.99450 * 157.63815 * 13 11 10 15 15 Si 1.86798 * 120.00328 * 337.64106 * 13 11 10 16 16 H 1.48498 * 109.47257 * 84.53524 * 15 13 11 17 17 H 1.48503 * 109.47225 * 204.53615 * 15 13 11 18 18 H 1.48504 * 109.47190 * 324.53501 * 15 13 11 19 19 C 1.47024 * 108.69937 * 24.12865 * 10 9 7 20 20 C 1.54317 * 107.27477 * 358.94009 * 19 10 9 21 21 H 1.08999 * 110.72071 * 96.16617 * 20 19 10 22 22 C 1.53001 * 110.87247 * 219.37620 * 20 19 10 23 23 C 1.50696 * 109.46859 * 239.99725 * 2 1 3 24 24 C 1.38229 * 119.99145 * 300.01716 * 23 2 1 25 25 C 1.38186 * 120.05313 * 180.02562 * 24 23 2 26 26 C 1.38496 * 120.02462 * 359.95826 * 25 24 23 27 27 F 1.35106 * 120.00880 * 180.02562 * 26 25 24 28 28 C 1.38395 * 119.97406 * 0.02562 * 26 25 24 29 29 C 1.38442 * 119.95064 * 359.97438 * 28 26 25 30 30 F 1.35097 * 120.00856 * 179.72242 * 29 28 26 31 31 H 1.09002 * 109.47375 * 60.00210 * 1 2 3 32 32 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46776 * 300.00243 * 1 2 3 34 34 H 0.97009 * 119.99755 * 359.97438 * 6 4 2 35 35 H 1.09001 * 110.36878 * 323.74903 * 9 7 6 36 36 H 1.08998 * 110.37129 * 86.07680 * 9 7 6 37 37 H 0.97000 * 119.99576 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.87848 * 239.51972 * 19 10 9 39 39 H 1.09004 * 110.00667 * 118.42891 * 19 10 9 40 40 H 1.09006 * 109.46905 * 173.61111 * 22 20 19 41 41 H 1.09006 * 109.46607 * 293.60450 * 22 20 19 42 42 H 1.08990 * 109.46993 * 53.60758 * 22 20 19 43 43 H 1.08001 * 119.97431 * 359.97438 * 24 23 2 44 44 H 1.08001 * 119.98781 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.01866 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2499 2.4546 7 6 2.1946 -0.9407 3.6508 8 1 3.1647 -1.4016 3.4648 9 6 1.1665 -1.9889 4.1448 10 7 1.4479 -2.1446 5.5835 11 6 1.1473 -3.2451 6.3411 12 1 1.6422 -3.4000 7.2883 13 6 0.2064 -4.1612 5.8913 14 7 0.2189 -5.3954 6.3485 15 14 -1.0773 -3.6426 4.6373 16 1 -0.5082 -3.7561 3.2704 17 1 -2.2668 -4.5241 4.7531 18 1 -1.4775 -2.2353 4.8917 19 6 2.1057 -0.9230 6.0701 20 6 2.2612 0.0256 4.8629 21 1 1.4421 0.7439 4.8288 22 6 3.6098 0.7469 4.9066 23 6 2.0323 -0.7105 -1.2304 24 6 1.6979 -2.0337 -1.4491 25 6 2.1582 -2.6866 -2.5767 26 6 2.9545 -2.0153 -3.4895 27 9 3.4040 -2.6538 -4.5921 28 6 3.2897 -0.6904 -3.2718 29 6 2.8280 -0.0373 -2.1418 30 9 3.1590 1.2545 -1.9253 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.1494 0.5391 2.5436 35 1 0.1505 -1.6239 3.9942 36 1 1.3111 -2.9362 3.6253 37 1 -0.4388 -6.0356 6.0345 38 1 3.0863 -1.1676 6.4782 39 1 1.4926 -0.4495 6.8370 40 1 3.7443 1.3217 3.9903 41 1 3.6345 1.4193 5.7643 42 1 4.4112 0.0137 4.9965 43 1 1.0771 -2.5581 -0.7377 44 1 1.8966 -3.7207 -2.7463 45 1 3.9110 -0.1663 -3.9830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080972579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:08 Heat of formation + Delta-G solvation = -100.695361 kcal Electronic energy + Delta-G solvation = -29761.387512 eV Core-core repulsion = 25414.449643 eV Total energy + Delta-G solvation = -4346.937869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.11319 -50.06354 -41.50003 -40.08029 -39.08917 -35.74863 -35.25757 -34.24751 -32.82144 -31.87226 -30.42867 -29.41970 -27.79351 -26.02681 -25.05415 -24.23160 -23.42965 -22.46456 -21.66729 -20.73775 -19.34557 -18.97586 -18.61364 -18.03139 -17.68552 -17.12358 -16.99223 -16.76525 -16.61467 -16.36848 -16.09937 -15.76048 -15.53558 -15.26065 -15.16361 -15.04524 -14.67686 -14.36549 -14.04711 -13.87644 -13.81429 -13.61082 -13.38784 -13.23406 -13.13430 -13.02527 -12.82310 -12.78859 -12.33359 -12.27034 -12.20931 -12.12611 -11.85358 -11.60653 -11.49037 -10.87989 -10.87140 -10.12161 -10.08907 -9.70770 -9.09561 -8.22195 -5.48885 -0.17271 -0.03277 1.26303 1.31508 1.41498 1.54960 1.96615 2.36467 2.38464 2.77318 3.01080 3.23169 3.32590 3.37252 3.47084 3.53895 3.75460 3.82308 3.89638 3.98842 4.04380 4.09636 4.24524 4.27455 4.46818 4.55983 4.62619 4.72768 4.75245 4.80175 4.82188 4.85200 4.87868 4.95503 4.99750 5.01927 5.08336 5.17594 5.21794 5.24623 5.37712 5.51837 5.65225 5.68496 6.06519 6.51351 6.71454 7.21075 7.49626 8.05020 8.97639 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.003360 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.571191 B = 8331.677352 C = 9488.824861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.135 0.865 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.701 5.701 7 C 0.149 3.851 8 H 0.081 0.919 9 C 0.104 3.896 10 N -0.626 5.626 11 C -0.237 4.237 12 H 0.062 0.938 13 C -0.038 4.038 14 N -0.955 5.955 15 Si 0.947 3.053 16 H -0.282 1.282 17 H -0.306 1.306 18 H -0.258 1.258 19 C 0.132 3.868 20 C -0.092 4.092 21 H 0.109 0.891 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.040 4.040 25 C -0.163 4.163 26 C 0.121 3.879 27 F -0.135 7.135 28 C -0.190 4.190 29 C 0.131 3.869 30 F -0.128 7.128 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.419 0.581 35 H 0.033 0.967 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 19.166 -19.741 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 H 0.152 0.848 4 C 0.301 3.699 5 O -0.451 6.451 6 N -0.353 5.353 7 C 0.042 3.958 8 H 0.099 0.901 9 C -0.022 4.022 10 N -0.353 5.353 11 C -0.365 4.365 12 H 0.080 0.920 13 C -0.233 4.233 14 N -0.602 5.602 15 Si 0.775 3.225 16 H -0.209 1.209 17 H -0.234 1.234 18 H -0.183 1.183 19 C 0.007 3.993 20 C -0.111 4.111 21 H 0.127 0.873 22 C -0.189 4.189 23 C -0.117 4.117 24 C -0.058 4.058 25 C -0.182 4.182 26 C 0.101 3.899 27 F -0.114 7.114 28 C -0.210 4.210 29 C 0.111 3.889 30 F -0.106 7.106 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.600 18.312 -19.773 27.075 hybrid contribution -0.680 -0.520 -0.197 0.879 sum 1.920 17.792 -19.970 26.815 Atomic orbital electron populations 1.21889 0.89555 1.03381 1.05156 1.20245 0.99517 1.00909 0.87704 0.84762 1.21015 0.79440 0.84117 0.85339 1.90746 1.39378 1.27846 1.87140 1.45704 1.53519 1.31912 1.04215 1.21918 0.96494 0.92746 0.84664 0.90131 1.22272 0.97194 0.97572 0.85176 1.44744 1.70884 1.15345 1.04372 1.18613 1.17352 0.97554 1.03014 0.92001 1.25665 1.01011 0.95369 1.01226 1.69979 1.37659 1.03395 1.49149 0.85933 0.79348 0.77943 0.79238 1.20851 1.23385 1.18324 1.21675 0.96088 0.85537 0.95998 1.22417 1.01155 0.95928 0.91629 0.87320 1.21701 0.93906 0.99995 1.03276 1.19556 1.00491 0.95344 0.96352 1.20767 0.96974 0.92764 0.95337 1.21379 0.99921 1.02330 0.94580 1.17372 0.97194 0.90622 0.84701 1.91524 1.87423 1.81663 1.50778 1.21117 1.05618 0.94399 0.99822 1.17038 0.97523 0.79240 0.95084 1.91506 1.90756 1.33803 1.94577 0.88966 0.92751 0.89430 0.74297 0.94936 0.96001 0.92879 0.94771 0.93975 0.90888 0.90330 0.93628 0.84738 0.82716 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.90 71.98 0.64 -1.28 16 2 C -0.06 -1.12 2.88 -12.29 -0.04 -1.16 16 3 H 0.13 1.78 7.12 -2.39 -0.02 1.76 16 4 C 0.51 13.47 7.02 87.66 0.62 14.09 16 5 O -0.57 -20.72 14.75 -3.04 -0.04 -20.76 16 6 N -0.70 -16.56 5.09 -435.97 -2.22 -18.78 16 7 C 0.15 4.74 2.87 46.38 0.13 4.87 16 8 H 0.08 2.99 7.45 -2.39 -0.02 2.97 16 9 C 0.10 4.47 4.39 86.85 0.38 4.85 16 10 N -0.63 -30.18 3.21 -691.99 -2.22 -32.40 16 11 C -0.24 -13.90 10.57 84.03 0.89 -13.01 16 12 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 13 C -0.04 -2.31 5.43 84.86 0.46 -1.84 16 14 N -0.96 -61.75 13.97 21.65 0.30 -61.45 16 15 Si 0.95 47.71 24.27 68.60 1.66 49.38 16 16 H -0.28 -13.91 6.49 99.48 0.65 -13.27 16 17 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 18 H -0.26 -12.06 6.66 99.48 0.66 -11.40 16 19 C 0.13 4.80 6.84 86.73 0.59 5.39 16 20 C -0.09 -2.39 3.19 -9.61 -0.03 -2.42 16 21 H 0.11 2.23 8.00 -2.39 -0.02 2.21 16 22 C -0.13 -2.65 9.17 71.98 0.66 -1.99 16 23 C -0.12 -2.41 4.40 -19.82 -0.09 -2.49 16 24 C -0.04 -0.89 7.93 22.26 0.18 -0.71 16 25 C -0.16 -3.31 10.03 22.32 0.22 -3.08 16 26 C 0.12 2.39 7.30 22.37 0.16 2.55 16 27 F -0.14 -2.76 17.27 44.97 0.78 -1.98 16 28 C -0.19 -3.43 10.01 22.36 0.22 -3.21 16 29 C 0.13 2.53 7.24 22.37 0.16 2.69 16 30 F -0.13 -2.35 16.19 44.97 0.73 -1.62 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 33 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 34 H 0.42 6.40 7.99 -92.70 -0.74 5.66 16 35 H 0.03 1.38 5.58 -2.39 -0.01 1.36 16 36 H 0.02 1.10 6.63 -2.39 -0.02 1.09 16 37 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 38 H 0.03 1.27 7.78 -2.39 -0.02 1.25 16 39 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.04 1.06 8.07 -2.39 -0.02 1.04 16 43 H 0.13 3.15 7.51 -2.91 -0.02 3.13 16 44 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 45 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -77.00 369.30 4.34 -72.66 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.18 Total: 11.69 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.17 Total: 3.26 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.13 Total: -112.63 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 1.50 Total: -3.60 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.66 Total: 49.38 kcal Total: -77.00 4.34 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080972579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.035 kcal (2) G-P(sol) polarization free energy of solvation -76.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds