Wall clock time and date at job start Tue Mar 31 2020 21:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47052 * 2 1 4 4 C 1.50702 * 109.47152 * 120.00161 * 2 1 3 5 5 O 1.21278 * 120.00130 * 27.80544 * 4 2 1 6 6 N 1.34773 * 119.99625 * 207.81142 * 4 2 1 7 7 C 1.47429 * 125.64966 * 175.04347 * 6 4 2 8 8 C 1.54910 * 104.83536 * 204.16258 * 7 6 4 9 9 H 1.09001 * 111.00132 * 81.06171 * 8 7 6 10 10 C 1.52994 * 111.00405 * 204.91353 * 8 7 6 11 11 C 1.55157 * 101.58156 * 322.99185 * 8 7 6 12 12 H 1.09002 * 110.87215 * 277.06662 * 11 8 7 13 13 N 1.46497 * 110.72134 * 153.86577 * 11 8 7 14 14 C 1.36929 * 120.00106 * 160.02509 * 13 11 8 15 15 H 1.08001 * 120.00368 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00008 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00166 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00126 * 0.27553 * 16 14 13 19 19 H 1.48510 * 109.46829 * 269.72339 * 18 16 14 20 20 H 1.48497 * 109.47163 * 29.72195 * 18 16 14 21 21 H 1.48494 * 109.47592 * 149.72561 * 18 16 14 22 22 C 1.47027 * 125.64982 * 355.08467 * 6 4 2 23 23 C 1.50699 * 109.47095 * 239.99743 * 2 1 3 24 24 C 1.38416 * 120.02830 * 299.72554 * 23 2 1 25 25 F 1.35098 * 120.01031 * 359.97438 * 24 23 2 26 26 C 1.38476 * 119.97423 * 179.69960 * 24 23 2 27 27 C 1.38208 * 120.02375 * 0.59268 * 26 24 23 28 28 C 1.38207 * 120.04983 * 359.68271 * 27 26 24 29 29 C 1.38423 * 120.02442 * 119.99487 * 23 2 1 30 30 F 1.35103 * 120.01176 * 359.97438 * 29 23 2 31 31 H 1.09008 * 109.46610 * 185.59047 * 1 2 3 32 32 H 1.08996 * 109.47192 * 305.58839 * 1 2 3 33 33 H 1.08995 * 109.47003 * 65.59561 * 1 2 3 34 34 H 1.09000 * 110.36272 * 323.00306 * 7 6 4 35 35 H 1.08999 * 110.36672 * 85.21298 * 7 6 4 36 36 H 1.09001 * 109.47461 * 172.19232 * 10 8 7 37 37 H 1.09001 * 109.47464 * 292.19706 * 10 8 7 38 38 H 1.09004 * 109.46967 * 52.20129 * 10 8 7 39 39 H 0.97005 * 119.99863 * 340.01996 * 13 11 8 40 40 H 0.96995 * 119.99923 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.88090 * 59.48975 * 22 6 4 42 42 H 1.08998 * 109.88329 * 298.32158 * 22 6 4 43 43 H 1.07998 * 119.98538 * 180.32137 * 26 24 23 44 44 H 1.08004 * 119.97124 * 179.69998 * 27 26 24 45 45 H 1.08001 * 119.98248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3586 -1.5755 1.7488 6 7 3.2303 -0.3844 1.7549 7 6 3.7955 -0.9217 3.0060 8 6 4.8046 0.1542 3.4795 9 1 4.2949 0.9671 3.9966 10 6 5.8882 -0.4627 4.3661 11 6 5.3988 0.6390 2.1307 12 1 6.1954 -0.0254 1.7961 13 7 5.8879 2.0152 2.2447 14 6 6.7962 2.4961 1.3399 15 1 7.1525 1.8608 0.5425 16 6 7.2592 3.8003 1.4476 17 7 8.1328 4.2624 0.5782 18 14 6.6490 4.8969 2.8312 19 1 5.4396 5.6329 2.3827 20 1 6.3109 4.0622 4.0119 21 1 7.7111 5.8674 3.1988 22 6 4.1897 0.5666 1.1744 23 6 2.0324 -0.7105 -1.2304 24 6 1.7030 -2.0373 -1.4471 25 9 0.9314 -2.6963 -0.5553 26 6 2.1601 -2.6872 -2.5812 27 6 2.9549 -2.0152 -3.4905 28 6 3.2891 -0.6920 -3.2722 29 6 2.8281 -0.0382 -2.1420 30 9 3.1544 1.2554 -1.9293 31 1 -0.3633 -1.0229 0.1001 32 1 -0.3633 0.5980 0.8357 33 1 -0.3633 0.4246 -0.9358 34 1 3.0099 -1.0582 3.7492 35 1 4.3061 -1.8659 2.8169 36 1 6.6577 0.2817 4.5706 37 1 5.4445 -0.7941 5.3049 38 1 6.3346 -1.3153 3.8542 39 1 5.5681 2.5858 2.9610 40 1 8.4566 5.1736 0.6536 41 1 3.7285 1.5502 1.0848 42 1 4.5127 0.2157 0.1944 43 1 1.8989 -3.7210 -2.7531 44 1 3.3149 -2.5243 -4.3723 45 1 3.9106 -0.1679 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082645783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:14 Heat of formation + Delta-G solvation = -83.569494 kcal Electronic energy + Delta-G solvation = -30712.386101 eV Core-core repulsion = 26366.190865 eV Total energy + Delta-G solvation = -4346.195235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.04946 -49.01467 -40.21682 -38.91935 -37.73090 -34.32334 -34.21006 -32.45476 -31.06384 -30.45763 -29.69427 -27.92934 -26.79652 -24.49463 -23.80212 -23.01089 -22.34403 -21.11624 -20.21315 -18.97856 -18.16876 -17.78577 -17.53894 -16.71767 -16.28733 -16.10728 -15.88353 -15.64189 -15.29703 -15.09132 -14.76291 -14.45994 -14.31590 -13.85072 -13.51311 -13.31876 -13.21162 -12.86842 -12.79492 -12.64152 -12.59350 -12.34838 -12.27328 -12.11739 -12.00845 -11.73451 -11.56207 -11.45157 -11.15327 -10.97855 -10.79374 -10.67500 -10.36888 -10.07412 -9.85676 -9.66651 -9.08294 -8.95465 -8.90794 -8.39445 -7.42212 -5.86063 -3.24032 0.73229 0.79575 2.69313 3.06113 3.22736 3.31466 3.34335 3.40384 3.75117 4.24679 4.27518 4.40714 4.50766 4.57533 4.61189 4.89331 4.93368 5.00079 5.04595 5.06380 5.20301 5.42386 5.49649 5.52862 5.61768 5.64008 5.66449 5.68166 5.74477 5.75750 5.82721 5.84219 5.87541 5.94535 6.06566 6.09802 6.14600 6.27554 6.33831 6.43871 6.49600 6.57128 6.72658 7.70242 7.87983 8.29172 8.32445 9.08843 9.81135 9.99294 11.31610 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004176 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.516724 B = 6702.715575 C = 7888.417166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.108 0.892 4 C 0.533 3.467 5 O -0.535 6.535 6 N -0.612 5.612 7 C 0.115 3.885 8 C -0.117 4.117 9 H 0.082 0.918 10 C -0.134 4.134 11 C 0.183 3.817 12 H 0.074 0.926 13 N -0.735 5.735 14 C -0.251 4.251 15 H 0.092 0.908 16 C 0.012 3.988 17 N -0.929 5.929 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.290 1.290 22 C 0.075 3.925 23 C -0.153 4.153 24 C 0.141 3.859 25 F -0.114 7.114 26 C -0.170 4.170 27 C -0.060 4.060 28 C -0.165 4.165 29 C 0.143 3.857 30 F -0.118 7.118 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 -12.760 -4.734 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 H 0.126 0.874 4 C 0.320 3.680 5 O -0.412 6.412 6 N -0.345 5.345 7 C -0.007 4.007 8 C -0.137 4.137 9 H 0.100 0.900 10 C -0.192 4.192 11 C 0.072 3.928 12 H 0.092 0.908 13 N -0.377 5.377 14 C -0.381 4.381 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.575 5.575 18 Si 0.711 3.289 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.216 1.216 22 C -0.051 4.051 23 C -0.155 4.155 24 C 0.121 3.879 25 F -0.092 7.092 26 C -0.189 4.189 27 C -0.079 4.079 28 C -0.183 4.183 29 C 0.123 3.877 30 F -0.097 7.097 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.794 -13.152 -4.629 18.924 hybrid contribution -0.313 1.218 0.960 1.583 sum -13.108 -11.934 -3.669 18.102 Atomic orbital electron populations 1.21724 0.91169 1.04196 1.02246 1.20140 0.98512 1.00545 0.89666 0.87378 1.19929 0.80041 0.82999 0.84990 1.90678 1.56535 1.31693 1.62319 1.48543 1.17095 1.44115 1.24782 1.22245 0.96090 0.96619 0.85786 1.22659 0.96113 0.97579 0.97317 0.90001 1.21622 0.98162 1.00972 0.98458 1.21201 0.92626 0.87971 0.91029 0.90788 1.42702 1.51605 1.09258 1.34137 1.19044 1.16090 0.96621 1.06341 0.89033 1.24654 0.98725 0.96980 0.98137 1.69694 1.33952 1.16684 1.37204 0.86608 0.78332 0.81123 0.82805 1.20989 1.20224 1.21627 1.23261 0.91108 0.92216 0.98514 1.19533 1.03462 0.94176 0.98331 1.17269 0.92842 0.89301 0.88458 1.91609 1.71596 1.79937 1.66048 1.21209 1.01759 1.01677 0.94271 1.20868 0.95159 0.93201 0.98633 1.21252 1.03355 0.95982 0.97760 1.17245 0.96231 0.79555 0.94633 1.91607 1.90370 1.33163 1.94525 0.90417 0.91599 0.91768 0.90883 0.91520 0.91423 0.93013 0.92508 0.80243 0.92920 0.90797 0.92159 0.84036 0.83875 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.59 37.16 0.32 -1.38 16 2 C -0.07 -0.96 2.30 -92.92 -0.21 -1.17 16 3 H 0.11 1.54 6.15 -51.93 -0.32 1.23 16 4 C 0.53 8.76 6.39 -10.99 -0.07 8.69 16 5 O -0.54 -9.92 14.81 5.56 0.08 -9.84 16 6 N -0.61 -9.85 3.33 -170.51 -0.57 -10.42 16 7 C 0.12 1.69 6.36 -2.53 -0.02 1.67 16 8 C -0.12 -1.74 3.25 -88.47 -0.29 -2.03 16 9 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 10 C -0.13 -1.77 9.31 37.15 0.35 -1.43 16 11 C 0.18 3.30 3.06 -66.09 -0.20 3.10 16 12 H 0.07 1.37 8.02 -51.93 -0.42 0.96 16 13 N -0.74 -16.16 4.98 -51.65 -0.26 -16.42 16 14 C -0.25 -6.66 10.46 -15.06 -0.16 -6.82 16 15 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 16 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 17 N -0.93 -28.07 13.97 55.49 0.78 -27.30 16 18 Si 0.88 21.22 27.74 -169.99 -4.71 16.50 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C 0.07 1.28 6.04 -3.06 -0.02 1.26 16 23 C -0.15 -2.04 4.78 -104.49 -0.50 -2.54 16 24 C 0.14 1.79 6.81 -39.43 -0.27 1.52 16 25 F -0.11 -1.65 13.36 2.25 0.03 -1.62 16 26 C -0.17 -1.66 10.03 -39.50 -0.40 -2.06 16 27 C -0.06 -0.51 10.04 -39.60 -0.40 -0.91 16 28 C -0.16 -1.69 10.02 -39.51 -0.40 -2.09 16 29 C 0.14 1.85 7.21 -39.43 -0.28 1.57 16 30 F -0.12 -1.76 16.19 2.25 0.04 -1.73 16 31 H 0.08 1.05 6.01 -51.92 -0.31 0.74 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.07 0.93 7.99 -51.93 -0.41 0.51 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.36 7.94 5.57 -40.82 -0.23 7.71 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 1.35 7.55 -51.93 -0.39 0.96 16 42 H 0.06 1.06 8.10 -51.93 -0.42 0.63 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -31.67 371.91 -7.96 -39.63 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.31 Total: 7.98 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.64 Total: -2.38 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.05 Total: -54.14 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -7.96 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082645783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.943 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds