Wall clock time and date at job start Tue Mar 31 2020 21:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47052 * 2 1 4 4 C 1.50702 * 109.47152 * 120.00161 * 2 1 3 5 5 O 1.21278 * 120.00130 * 27.80544 * 4 2 1 6 6 N 1.34773 * 119.99625 * 207.81142 * 4 2 1 7 7 C 1.47429 * 125.64966 * 175.04347 * 6 4 2 8 8 C 1.54910 * 104.83536 * 204.16258 * 7 6 4 9 9 H 1.09001 * 111.00132 * 81.06171 * 8 7 6 10 10 C 1.52994 * 111.00405 * 204.91353 * 8 7 6 11 11 C 1.55157 * 101.58156 * 322.99185 * 8 7 6 12 12 H 1.09002 * 110.87215 * 277.06662 * 11 8 7 13 13 N 1.46497 * 110.72134 * 153.86577 * 11 8 7 14 14 C 1.36929 * 120.00106 * 160.02509 * 13 11 8 15 15 H 1.08001 * 120.00368 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00008 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00166 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00126 * 0.27553 * 16 14 13 19 19 H 1.48510 * 109.46829 * 269.72339 * 18 16 14 20 20 H 1.48497 * 109.47163 * 29.72195 * 18 16 14 21 21 H 1.48494 * 109.47592 * 149.72561 * 18 16 14 22 22 C 1.47027 * 125.64982 * 355.08467 * 6 4 2 23 23 C 1.50699 * 109.47095 * 239.99743 * 2 1 3 24 24 C 1.38416 * 120.02830 * 299.72554 * 23 2 1 25 25 F 1.35098 * 120.01031 * 359.97438 * 24 23 2 26 26 C 1.38476 * 119.97423 * 179.69960 * 24 23 2 27 27 C 1.38208 * 120.02375 * 0.59268 * 26 24 23 28 28 C 1.38207 * 120.04983 * 359.68271 * 27 26 24 29 29 C 1.38423 * 120.02442 * 119.99487 * 23 2 1 30 30 F 1.35103 * 120.01176 * 359.97438 * 29 23 2 31 31 H 1.09008 * 109.46610 * 185.59047 * 1 2 3 32 32 H 1.08996 * 109.47192 * 305.58839 * 1 2 3 33 33 H 1.08995 * 109.47003 * 65.59561 * 1 2 3 34 34 H 1.09000 * 110.36272 * 323.00306 * 7 6 4 35 35 H 1.08999 * 110.36672 * 85.21298 * 7 6 4 36 36 H 1.09001 * 109.47461 * 172.19232 * 10 8 7 37 37 H 1.09001 * 109.47464 * 292.19706 * 10 8 7 38 38 H 1.09004 * 109.46967 * 52.20129 * 10 8 7 39 39 H 0.97005 * 119.99863 * 340.01996 * 13 11 8 40 40 H 0.96995 * 119.99923 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.88090 * 59.48975 * 22 6 4 42 42 H 1.08998 * 109.88329 * 298.32158 * 22 6 4 43 43 H 1.07998 * 119.98538 * 180.32137 * 26 24 23 44 44 H 1.08004 * 119.97124 * 179.69998 * 27 26 24 45 45 H 1.08001 * 119.98248 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3586 -1.5755 1.7488 6 7 3.2303 -0.3844 1.7549 7 6 3.7955 -0.9217 3.0060 8 6 4.8046 0.1542 3.4795 9 1 4.2949 0.9671 3.9966 10 6 5.8882 -0.4627 4.3661 11 6 5.3988 0.6390 2.1307 12 1 6.1954 -0.0254 1.7961 13 7 5.8879 2.0152 2.2447 14 6 6.7962 2.4961 1.3399 15 1 7.1525 1.8608 0.5425 16 6 7.2592 3.8003 1.4476 17 7 8.1328 4.2624 0.5782 18 14 6.6490 4.8969 2.8312 19 1 5.4396 5.6329 2.3827 20 1 6.3109 4.0622 4.0119 21 1 7.7111 5.8674 3.1988 22 6 4.1897 0.5666 1.1744 23 6 2.0324 -0.7105 -1.2304 24 6 1.7030 -2.0373 -1.4471 25 9 0.9314 -2.6963 -0.5553 26 6 2.1601 -2.6872 -2.5812 27 6 2.9549 -2.0152 -3.4905 28 6 3.2891 -0.6920 -3.2722 29 6 2.8281 -0.0382 -2.1420 30 9 3.1544 1.2554 -1.9293 31 1 -0.3633 -1.0229 0.1001 32 1 -0.3633 0.5980 0.8357 33 1 -0.3633 0.4246 -0.9358 34 1 3.0099 -1.0582 3.7492 35 1 4.3061 -1.8659 2.8169 36 1 6.6577 0.2817 4.5706 37 1 5.4445 -0.7941 5.3049 38 1 6.3346 -1.3153 3.8542 39 1 5.5681 2.5858 2.9610 40 1 8.4566 5.1736 0.6536 41 1 3.7285 1.5502 1.0848 42 1 4.5127 0.2157 0.1944 43 1 1.8989 -3.7210 -2.7531 44 1 3.3149 -2.5243 -4.3723 45 1 3.9106 -0.1679 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082645783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:13 Heat of formation + Delta-G solvation = -101.838311 kcal Electronic energy + Delta-G solvation = -30713.178296 eV Core-core repulsion = 26366.190865 eV Total energy + Delta-G solvation = -4346.987431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.09359 -50.01249 -41.48014 -39.90062 -39.05303 -35.99163 -35.38837 -33.91283 -32.87058 -31.30549 -30.61261 -29.51860 -27.94829 -25.82262 -25.28350 -23.92460 -23.50524 -22.49871 -21.64811 -20.19475 -19.53793 -19.12492 -18.84726 -17.81798 -17.53061 -17.22394 -17.01199 -16.62515 -16.47317 -16.33911 -16.15518 -15.82914 -15.42944 -15.07273 -14.93880 -14.90351 -14.55279 -14.30252 -13.94559 -13.81350 -13.72860 -13.57385 -13.27291 -13.22077 -13.00285 -12.97960 -12.96040 -12.94551 -12.55296 -12.24918 -12.16699 -11.96084 -11.93442 -11.81819 -11.49124 -11.14450 -10.96727 -9.93483 -9.79888 -9.73535 -9.38648 -8.01434 -5.36952 -0.13252 -0.07304 1.39557 1.41547 1.41977 1.48730 1.85611 2.32962 2.48762 2.84672 3.18553 3.28038 3.30323 3.38740 3.56011 3.57087 3.68956 3.77784 3.83465 4.04787 4.09000 4.11868 4.19144 4.26718 4.35231 4.54606 4.58674 4.65048 4.71029 4.79279 4.80620 4.83062 4.83922 4.97075 5.02187 5.03114 5.06019 5.10632 5.16308 5.21005 5.25122 5.44324 5.73175 5.77175 6.21383 6.37462 6.98704 7.06456 7.79446 7.98918 9.19404 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004176 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.516724 B = 6702.715575 C = 7888.417166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 H 0.100 0.900 4 C 0.532 3.468 5 O -0.557 6.557 6 N -0.613 5.613 7 C 0.116 3.884 8 C -0.104 4.104 9 H 0.083 0.917 10 C -0.130 4.130 11 C 0.176 3.824 12 H 0.069 0.931 13 N -0.736 5.736 14 C -0.230 4.230 15 H 0.061 0.939 16 C -0.054 4.054 17 N -0.979 5.979 18 Si 0.946 3.054 19 H -0.282 1.282 20 H -0.249 1.249 21 H -0.298 1.298 22 C 0.091 3.909 23 C -0.166 4.166 24 C 0.117 3.883 25 F -0.129 7.129 26 C -0.159 4.159 27 C -0.045 4.045 28 C -0.162 4.162 29 C 0.117 3.883 30 F -0.138 7.138 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.169 0.831 44 H 0.187 0.813 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.444 -14.290 -4.483 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.119 0.881 4 C 0.320 3.680 5 O -0.436 6.436 6 N -0.346 5.346 7 C -0.006 4.006 8 C -0.123 4.123 9 H 0.102 0.898 10 C -0.188 4.188 11 C 0.066 3.934 12 H 0.087 0.913 13 N -0.378 5.378 14 C -0.361 4.361 15 H 0.079 0.921 16 C -0.246 4.246 17 N -0.629 5.629 18 Si 0.774 3.226 19 H -0.209 1.209 20 H -0.173 1.173 21 H -0.225 1.225 22 C -0.035 4.035 23 C -0.169 4.169 24 C 0.098 3.902 25 F -0.108 7.108 26 C -0.178 4.178 27 C -0.062 4.062 28 C -0.181 4.181 29 C 0.097 3.903 30 F -0.117 7.117 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.187 0.813 44 H 0.204 0.796 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.723 -14.731 -4.350 20.597 hybrid contribution -0.038 1.549 0.766 1.729 sum -13.761 -13.182 -3.584 19.390 Atomic orbital electron populations 1.21694 0.90096 1.03688 1.03277 1.20137 0.99458 0.99897 0.89398 0.88139 1.20303 0.79704 0.82667 0.85285 1.90660 1.57048 1.32729 1.63115 1.48580 1.16988 1.43835 1.25226 1.22344 0.96188 0.96792 0.85309 1.22588 0.96413 0.97689 0.95653 0.89821 1.21606 0.97212 1.00684 0.99305 1.21361 0.92664 0.85903 0.93447 0.91347 1.42620 1.50983 1.10860 1.33356 1.18970 1.15486 0.95997 1.05646 0.92097 1.25390 0.99565 0.98685 1.00963 1.69866 1.36285 1.17000 1.39754 0.85550 0.77307 0.79131 0.80652 1.20856 1.17320 1.22458 1.22879 0.90833 0.91889 0.97906 1.19502 1.04406 0.94747 0.98201 1.17581 0.93822 0.89318 0.89507 1.91567 1.72221 1.80128 1.66855 1.21597 1.00494 1.02815 0.92861 1.21355 0.93406 0.92210 0.99247 1.21598 1.02756 0.96844 0.96878 1.17561 0.97551 0.79138 0.96038 1.91551 1.90750 1.34572 1.94816 0.91444 0.91338 0.90099 0.90106 0.90494 0.92796 0.90465 0.91760 0.79798 0.93359 0.92060 0.92943 0.81322 0.79618 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.59 71.98 0.62 -2.63 16 2 C -0.07 -1.94 2.30 -12.28 -0.03 -1.97 16 3 H 0.10 2.98 6.15 -2.39 -0.01 2.96 16 4 C 0.53 17.42 6.39 87.66 0.56 17.98 16 5 O -0.56 -20.51 14.81 -3.02 -0.04 -20.55 16 6 N -0.61 -19.45 3.33 -811.77 -2.70 -22.15 16 7 C 0.12 3.19 6.36 86.85 0.55 3.75 16 8 C -0.10 -2.90 3.25 -9.40 -0.03 -2.93 16 9 H 0.08 2.35 8.00 -2.39 -0.02 2.34 16 10 C -0.13 -3.11 9.31 71.98 0.67 -2.44 16 11 C 0.18 6.25 3.06 46.18 0.14 6.39 16 12 H 0.07 2.52 8.02 -2.39 -0.02 2.50 16 13 N -0.74 -31.99 4.98 -317.33 -1.58 -33.57 16 14 C -0.23 -12.38 10.46 84.03 0.88 -11.50 16 15 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 16 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 17 N -0.98 -60.82 13.97 21.65 0.30 -60.52 16 18 Si 0.95 43.81 27.74 68.60 1.90 45.71 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.25 -10.26 6.52 99.48 0.65 -9.62 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 C 0.09 3.13 6.04 86.73 0.52 3.65 16 23 C -0.17 -4.43 4.78 -19.78 -0.09 -4.53 16 24 C 0.12 2.87 6.81 22.37 0.15 3.02 16 25 F -0.13 -3.71 13.36 44.97 0.60 -3.11 16 26 C -0.16 -2.67 10.03 22.32 0.22 -2.45 16 27 C -0.04 -0.60 10.04 22.26 0.22 -0.38 16 28 C -0.16 -3.04 10.02 22.32 0.22 -2.82 16 29 C 0.12 3.00 7.21 22.37 0.16 3.16 16 30 F -0.14 -4.26 16.19 44.97 0.73 -3.53 16 31 H 0.07 1.83 6.01 -2.38 -0.01 1.82 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 35 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 39 H 0.37 15.46 5.57 -92.70 -0.52 14.94 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.06 2.27 7.55 -2.39 -0.02 2.26 16 42 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 43 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -70.41 371.91 4.89 -65.52 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.44 Total: 28.47 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.24 Total: 3.72 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.98 Total: -116.23 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 1.33 Total: -6.64 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -70.41 4.89 -65.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082645783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.318 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds