Wall clock time and date at job start Tue Mar 31 2020 21:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47347 * 2 1 4 4 C 1.50696 * 109.47373 * 120.00628 * 2 1 3 5 5 O 1.21277 * 120.00231 * 119.99457 * 4 2 1 6 6 N 1.34779 * 120.00281 * 299.99946 * 4 2 1 7 7 C 1.47019 * 125.65427 * 179.97438 * 6 4 2 8 8 C 1.54320 * 107.27366 * 178.95759 * 7 6 4 9 9 H 1.09000 * 110.86807 * 96.23967 * 8 7 6 10 10 C 1.52991 * 110.72031 * 219.44021 * 8 7 6 11 11 C 1.55156 * 102.94440 * 337.81011 * 8 7 6 12 12 H 1.09005 * 111.00043 * 277.39069 * 11 8 7 13 13 N 1.46499 * 111.00686 * 153.57453 * 11 8 7 14 14 C 1.36935 * 119.99938 * 154.99984 * 13 11 8 15 15 H 1.07999 * 120.00083 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99632 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99535 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 0.27829 * 16 14 13 19 19 H 1.48501 * 109.46922 * 269.71949 * 18 16 14 20 20 H 1.48496 * 109.47354 * 29.72145 * 18 16 14 21 21 H 1.48501 * 109.47428 * 149.72253 * 18 16 14 22 22 C 1.47426 * 125.64319 * 0.02562 * 6 4 2 23 23 C 1.50697 * 109.46723 * 240.00513 * 2 1 3 24 24 C 1.38263 * 119.96734 * 299.72410 * 23 2 1 25 25 C 1.38213 * 120.07052 * 179.76534 * 24 23 2 26 26 C 1.38412 * 120.00176 * 0.51172 * 25 24 23 27 27 F 1.35100 * 120.03615 * 179.71827 * 26 25 24 28 28 C 1.38653 * 119.92557 * 359.74500 * 26 25 24 29 29 F 1.35100 * 120.03187 * 179.97438 * 28 26 25 30 30 C 1.38217 * 119.96587 * 119.99882 * 23 2 1 31 31 H 1.09003 * 109.46697 * 299.99308 * 1 2 3 32 32 H 1.09001 * 109.47699 * 59.99014 * 1 2 3 33 33 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.87921 * 59.53873 * 7 6 4 35 35 H 1.08999 * 110.00665 * 298.45373 * 7 6 4 36 36 H 1.09002 * 109.47167 * 173.51980 * 10 8 7 37 37 H 1.08993 * 109.47850 * 293.52706 * 10 8 7 38 38 H 1.09000 * 109.46940 * 53.52692 * 10 8 7 39 39 H 0.97004 * 119.99469 * 335.00052 * 13 11 8 40 40 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 41 41 H 1.09005 * 110.36543 * 85.27184 * 22 6 4 42 42 H 1.08998 * 110.37275 * 322.94858 * 22 6 4 43 43 H 1.07993 * 119.95818 * 0.02562 * 24 23 2 44 44 H 1.08000 * 119.99504 * 180.25113 * 25 24 23 45 45 H 1.08002 * 119.99779 * 359.96049 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 2.1259 -0.8438 3.7326 8 6 1.5392 0.0326 4.8592 9 1 0.6017 -0.3843 5.2272 10 6 2.5446 0.1903 6.0016 11 6 1.2952 1.3914 4.1510 12 1 2.2105 1.9822 4.1132 13 7 0.2180 2.1385 4.8051 14 6 0.1718 3.5033 4.7037 15 1 0.9292 4.0289 4.1412 16 6 -0.8493 4.2110 5.3229 17 7 -0.8934 5.5229 5.2259 18 14 -2.1557 3.3023 6.3010 19 1 -3.2874 2.9493 5.4067 20 1 -1.5724 2.0628 6.8741 21 1 -2.6462 4.1725 7.3999 22 6 0.8706 0.9314 2.7337 23 6 2.0322 -0.7103 -1.2305 24 6 1.7024 -2.0356 -1.4459 25 6 2.1579 -2.6878 -2.5762 26 6 2.9538 -2.0172 -3.4887 27 9 3.4040 -2.6556 -4.5909 28 6 3.2888 -0.6896 -3.2700 29 9 4.0660 -0.0332 -4.1590 30 6 2.8268 -0.0378 -2.1399 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.2139 -0.8526 3.7982 35 1 1.7416 -1.8605 3.8154 36 1 2.1577 0.9027 6.7303 37 1 2.7007 -0.7744 6.4840 38 1 3.4917 0.5553 5.6042 39 1 -0.4625 1.6662 5.3099 40 1 -1.6067 6.0175 5.6590 41 1 -0.1851 0.6601 2.7230 42 1 1.0686 1.7172 2.0048 43 1 1.0849 -2.5605 -0.7322 44 1 1.8962 -3.7219 -2.7452 45 1 3.0868 0.9963 -1.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082932246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:25 Heat of formation + Delta-G solvation = -85.535072 kcal Electronic energy + Delta-G solvation = -29228.115961 eV Core-core repulsion = 24881.835492 eV Total energy + Delta-G solvation = -4346.280469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.64765 -48.72507 -40.61559 -39.15042 -37.62400 -34.45898 -34.18184 -32.48553 -31.19255 -31.10405 -29.32279 -28.07293 -26.50311 -24.89129 -23.77746 -23.52080 -22.28310 -21.16427 -20.27079 -19.28579 -18.14894 -17.70989 -17.55759 -17.11287 -16.61580 -16.46600 -16.16110 -15.42338 -15.14463 -15.08162 -14.69242 -14.57600 -14.29455 -14.18485 -13.67129 -13.58036 -13.33797 -13.31358 -13.04218 -12.92017 -12.70520 -12.50040 -12.26365 -12.02721 -11.92751 -11.80323 -11.55315 -11.48177 -11.26631 -11.18429 -10.83095 -10.73818 -10.44000 -10.12473 -9.82757 -9.72515 -9.28849 -9.12651 -8.83596 -8.52698 -7.48726 -5.92967 -3.31656 0.66216 0.77868 2.62305 2.89265 3.23851 3.26055 3.28202 3.35638 3.55880 4.06824 4.19302 4.29018 4.43881 4.47501 4.73437 4.80675 4.88069 4.89226 4.94373 5.00299 5.02219 5.31852 5.39172 5.42496 5.51581 5.52409 5.55344 5.61473 5.65704 5.67546 5.70133 5.76443 5.79950 5.93451 5.99233 6.05972 6.14085 6.18092 6.25016 6.33922 6.42588 6.50480 6.63897 7.58818 7.80374 8.16369 8.25423 9.01518 9.73647 9.91282 11.24472 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.002561 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.946640 B =10928.724723 C =11636.919485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 H 0.111 0.889 4 C 0.532 3.468 5 O -0.544 6.544 6 N -0.610 5.610 7 C 0.117 3.883 8 C -0.118 4.118 9 H 0.081 0.919 10 C -0.136 4.136 11 C 0.182 3.818 12 H 0.078 0.922 13 N -0.733 5.733 14 C -0.255 4.255 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.276 1.276 21 H -0.290 1.290 22 C 0.069 3.931 23 C -0.043 4.043 24 C -0.064 4.064 25 C -0.127 4.127 26 C 0.064 3.936 27 F -0.132 7.132 28 C 0.065 3.935 29 F -0.130 7.130 30 C -0.117 4.117 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.364 0.636 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -14.999 -11.461 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 H 0.129 0.871 4 C 0.320 3.680 5 O -0.422 6.422 6 N -0.343 5.343 7 C -0.006 4.006 8 C -0.138 4.138 9 H 0.100 0.900 10 C -0.193 4.193 11 C 0.069 3.931 12 H 0.096 0.904 13 N -0.374 5.374 14 C -0.384 4.384 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.574 5.574 18 Si 0.713 3.287 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.216 1.216 22 C -0.056 4.056 23 C -0.043 4.043 24 C -0.083 4.083 25 C -0.145 4.145 26 C 0.044 3.956 27 F -0.110 7.110 28 C 0.045 3.955 29 F -0.109 7.109 30 C -0.136 4.136 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.871 -15.258 -11.687 19.827 hybrid contribution -0.802 -0.436 0.327 0.970 sum 4.069 -15.694 -11.360 19.796 Atomic orbital electron populations 1.21986 0.91281 1.03249 1.04352 1.20244 0.98407 1.00506 0.89827 0.87106 1.19991 0.80283 0.84412 0.83320 1.90703 1.38575 1.26678 1.86225 1.48445 1.51002 1.30014 1.04877 1.21964 0.99668 0.96725 0.82202 1.22562 0.99533 0.96873 0.94860 0.90016 1.21675 0.98388 1.01418 0.97853 1.21355 0.92698 0.90343 0.88658 0.90442 1.42645 1.29066 1.04584 1.61153 1.19050 1.09998 0.80606 1.28773 0.88987 1.24682 0.98580 0.95223 1.00063 1.69698 1.34570 1.05067 1.48055 0.86592 0.82623 0.79146 0.80375 1.20956 1.20190 1.21627 1.23578 0.94628 0.85979 1.01447 1.19258 0.96424 0.94064 0.94598 1.20877 0.98298 0.93539 0.95541 1.21038 0.98366 1.01196 0.93945 1.17695 1.01093 0.90041 0.86804 1.91517 1.87547 1.81419 1.50559 1.17556 0.97351 0.89772 0.90854 1.91526 1.72266 1.80537 1.66559 1.20958 0.98517 1.01431 0.92692 0.89984 0.90972 0.91932 0.91435 0.91906 0.91393 0.93106 0.92578 0.80223 0.92829 0.90924 0.90537 0.84444 0.83707 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.82 37.16 0.33 -1.07 16 2 C -0.07 -0.73 2.25 -92.93 -0.21 -0.93 16 3 H 0.11 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.53 7.12 7.08 -10.99 -0.08 7.05 16 5 O -0.54 -8.75 15.41 5.56 0.09 -8.67 16 6 N -0.61 -8.08 3.32 -170.51 -0.57 -8.65 16 7 C 0.12 1.50 6.46 -3.07 -0.02 1.48 16 8 C -0.12 -1.58 3.20 -88.79 -0.28 -1.86 16 9 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 10 C -0.14 -1.68 9.16 37.15 0.34 -1.34 16 11 C 0.18 2.92 3.16 -65.77 -0.21 2.72 16 12 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 13 N -0.73 -14.89 5.05 -51.34 -0.26 -15.15 16 14 C -0.25 -6.40 10.44 -15.06 -0.16 -6.56 16 15 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 17 N -0.93 -27.21 13.97 55.49 0.78 -26.44 16 18 Si 0.88 20.26 27.74 -169.99 -4.71 15.54 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -5.89 6.52 56.52 0.37 -5.52 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 C 0.07 0.97 4.83 -2.51 -0.01 0.96 16 23 C -0.04 -0.45 4.40 -104.62 -0.46 -0.92 16 24 C -0.06 -0.66 7.92 -39.58 -0.31 -0.97 16 25 C -0.13 -1.23 10.02 -39.53 -0.40 -1.63 16 26 C 0.06 0.72 7.31 -39.36 -0.29 0.43 16 27 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 28 C 0.06 0.75 7.31 -39.37 -0.29 0.46 16 29 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 30 C -0.12 -1.22 9.65 -39.53 -0.38 -1.60 16 31 H 0.08 0.83 4.99 -51.93 -0.26 0.57 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 7.40 -51.93 -0.38 0.16 16 34 H 0.07 0.87 7.76 -51.93 -0.40 0.47 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.36 7.33 5.62 -40.82 -0.23 7.10 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.02 7.07 -51.93 -0.37 0.65 16 42 H 0.08 1.05 7.36 -51.93 -0.38 0.66 16 43 H 0.14 1.31 7.51 -52.49 -0.39 0.92 16 44 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.15 1.26 7.94 -52.49 -0.42 0.84 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -30.07 372.39 -7.70 -37.76 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.18 Total: 6.69 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.52 Total: -3.60 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.05 Total: -50.24 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.71 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.07 -7.70 -37.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082932246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.772 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds