Wall clock time and date at job start Tue Mar 31 2020 21:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47347 * 2 1 4 4 C 1.50696 * 109.47373 * 120.00628 * 2 1 3 5 5 O 1.21277 * 120.00231 * 119.99457 * 4 2 1 6 6 N 1.34779 * 120.00281 * 299.99946 * 4 2 1 7 7 C 1.47019 * 125.65427 * 179.97438 * 6 4 2 8 8 C 1.54320 * 107.27366 * 178.95759 * 7 6 4 9 9 H 1.09000 * 110.86807 * 96.23967 * 8 7 6 10 10 C 1.52991 * 110.72031 * 219.44021 * 8 7 6 11 11 C 1.55156 * 102.94440 * 337.81011 * 8 7 6 12 12 H 1.09005 * 111.00043 * 277.39069 * 11 8 7 13 13 N 1.46499 * 111.00686 * 153.57453 * 11 8 7 14 14 C 1.36935 * 119.99938 * 154.99984 * 13 11 8 15 15 H 1.07999 * 120.00083 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99632 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99535 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 0.27829 * 16 14 13 19 19 H 1.48501 * 109.46922 * 269.71949 * 18 16 14 20 20 H 1.48496 * 109.47354 * 29.72145 * 18 16 14 21 21 H 1.48501 * 109.47428 * 149.72253 * 18 16 14 22 22 C 1.47426 * 125.64319 * 0.02562 * 6 4 2 23 23 C 1.50697 * 109.46723 * 240.00513 * 2 1 3 24 24 C 1.38263 * 119.96734 * 299.72410 * 23 2 1 25 25 C 1.38213 * 120.07052 * 179.76534 * 24 23 2 26 26 C 1.38412 * 120.00176 * 0.51172 * 25 24 23 27 27 F 1.35100 * 120.03615 * 179.71827 * 26 25 24 28 28 C 1.38653 * 119.92557 * 359.74500 * 26 25 24 29 29 F 1.35100 * 120.03187 * 179.97438 * 28 26 25 30 30 C 1.38217 * 119.96587 * 119.99882 * 23 2 1 31 31 H 1.09003 * 109.46697 * 299.99308 * 1 2 3 32 32 H 1.09001 * 109.47699 * 59.99014 * 1 2 3 33 33 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.87921 * 59.53873 * 7 6 4 35 35 H 1.08999 * 110.00665 * 298.45373 * 7 6 4 36 36 H 1.09002 * 109.47167 * 173.51980 * 10 8 7 37 37 H 1.08993 * 109.47850 * 293.52706 * 10 8 7 38 38 H 1.09000 * 109.46940 * 53.52692 * 10 8 7 39 39 H 0.97004 * 119.99469 * 335.00052 * 13 11 8 40 40 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 41 41 H 1.09005 * 110.36543 * 85.27184 * 22 6 4 42 42 H 1.08998 * 110.37275 * 322.94858 * 22 6 4 43 43 H 1.07993 * 119.95818 * 0.02562 * 24 23 2 44 44 H 1.08000 * 119.99504 * 180.25113 * 25 24 23 45 45 H 1.08002 * 119.99779 * 359.96049 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7069 -0.2502 2.4545 7 6 2.1259 -0.8438 3.7326 8 6 1.5392 0.0326 4.8592 9 1 0.6017 -0.3843 5.2272 10 6 2.5446 0.1903 6.0016 11 6 1.2952 1.3914 4.1510 12 1 2.2105 1.9822 4.1132 13 7 0.2180 2.1385 4.8051 14 6 0.1718 3.5033 4.7037 15 1 0.9292 4.0289 4.1412 16 6 -0.8493 4.2110 5.3229 17 7 -0.8934 5.5229 5.2259 18 14 -2.1557 3.3023 6.3010 19 1 -3.2874 2.9493 5.4067 20 1 -1.5724 2.0628 6.8741 21 1 -2.6462 4.1725 7.3999 22 6 0.8706 0.9314 2.7337 23 6 2.0322 -0.7103 -1.2305 24 6 1.7024 -2.0356 -1.4459 25 6 2.1579 -2.6878 -2.5762 26 6 2.9538 -2.0172 -3.4887 27 9 3.4040 -2.6556 -4.5909 28 6 3.2888 -0.6896 -3.2700 29 9 4.0660 -0.0332 -4.1590 30 6 2.8268 -0.0378 -2.1399 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.2139 -0.8526 3.7982 35 1 1.7416 -1.8605 3.8154 36 1 2.1577 0.9027 6.7303 37 1 2.7007 -0.7744 6.4840 38 1 3.4917 0.5553 5.6042 39 1 -0.4625 1.6662 5.3099 40 1 -1.6067 6.0175 5.6590 41 1 -0.1851 0.6601 2.7230 42 1 1.0686 1.7172 2.0048 43 1 1.0849 -2.5605 -0.7322 44 1 1.8962 -3.7219 -2.7452 45 1 3.0868 0.9963 -1.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082932246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:24 Heat of formation + Delta-G solvation = -102.047144 kcal Electronic energy + Delta-G solvation = -29228.831978 eV Core-core repulsion = 24881.835492 eV Total energy + Delta-G solvation = -4346.996486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.54189 -49.62610 -41.62268 -40.11026 -38.76449 -35.94561 -35.23663 -33.76745 -32.81232 -31.94806 -30.15026 -29.46191 -27.49593 -25.95142 -25.23984 -24.32346 -23.36894 -22.37002 -21.53287 -20.31194 -19.49152 -19.01128 -18.47793 -18.02502 -17.61902 -17.38128 -17.35422 -16.47239 -16.34946 -16.05332 -15.87695 -15.61933 -15.52159 -15.02385 -14.88964 -14.80327 -14.58386 -14.47390 -14.25307 -13.91676 -13.80796 -13.48099 -13.31447 -13.19363 -12.93291 -12.91427 -12.85749 -12.62214 -12.43513 -12.16841 -12.09456 -12.00012 -11.88488 -11.77810 -11.39717 -10.98520 -10.80207 -10.09512 -9.69871 -9.66821 -9.28042 -7.97671 -5.32780 -0.17885 -0.01669 1.44301 1.46504 1.53983 1.57996 1.90393 2.37290 2.53174 2.73606 3.20474 3.31554 3.32536 3.37208 3.54724 3.71586 3.80217 3.89122 4.00565 4.03700 4.09057 4.14582 4.23445 4.36050 4.43697 4.58770 4.64839 4.72536 4.75134 4.78996 4.85327 4.87708 4.91602 4.94729 5.00365 5.09981 5.11699 5.21244 5.28215 5.33947 5.36787 5.47226 5.69095 5.82327 6.25495 6.50792 7.09210 7.12460 7.85115 8.04070 9.23185 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.002561 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.946640 B =10928.724723 C =11636.919485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 H 0.121 0.879 4 C 0.532 3.468 5 O -0.570 6.570 6 N -0.609 5.609 7 C 0.119 3.881 8 C -0.107 4.107 9 H 0.090 0.910 10 C -0.134 4.134 11 C 0.171 3.829 12 H 0.063 0.937 13 N -0.734 5.734 14 C -0.227 4.227 15 H 0.061 0.939 16 C -0.059 4.059 17 N -0.983 5.983 18 Si 0.949 3.051 19 H -0.278 1.278 20 H -0.247 1.247 21 H -0.304 1.304 22 C 0.082 3.918 23 C -0.049 4.049 24 C -0.067 4.067 25 C -0.120 4.120 26 C 0.051 3.949 27 F -0.139 7.139 28 C 0.049 3.951 29 F -0.140 7.140 30 C -0.117 4.117 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -17.397 -11.270 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 H 0.139 0.861 4 C 0.321 3.679 5 O -0.450 6.450 6 N -0.342 5.342 7 C -0.004 4.004 8 C -0.126 4.126 9 H 0.108 0.892 10 C -0.191 4.191 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.376 5.376 14 C -0.358 4.358 15 H 0.079 0.921 16 C -0.251 4.251 17 N -0.633 5.633 18 Si 0.776 3.224 19 H -0.204 1.204 20 H -0.172 1.172 21 H -0.232 1.232 22 C -0.043 4.043 23 C -0.049 4.049 24 C -0.085 4.085 25 C -0.138 4.138 26 C 0.031 3.969 27 F -0.118 7.118 28 C 0.029 3.971 29 F -0.118 7.118 30 C -0.136 4.136 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.203 0.797 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.164 0.836 44 H 0.186 0.814 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.267 -17.722 -11.512 21.560 hybrid contribution -0.476 0.274 0.217 0.591 sum 3.791 -17.448 -11.295 21.128 Atomic orbital electron populations 1.21973 0.90080 1.03795 1.04630 1.20258 0.99291 1.00572 0.88403 0.86107 1.20421 0.79603 0.84056 0.83792 1.90694 1.39788 1.27972 1.86562 1.48440 1.50827 1.29640 1.05270 1.21981 0.99719 0.97031 0.81650 1.22480 1.00262 0.94763 0.95123 0.89173 1.21660 0.97985 1.02277 0.97200 1.21513 0.90914 0.91297 0.90197 0.91906 1.42540 1.30321 1.02917 1.61855 1.18985 1.08033 0.82652 1.26139 0.92059 1.25438 1.01476 0.95875 1.02273 1.69880 1.35839 1.07126 1.50425 0.85509 0.79820 0.78592 0.78435 1.20389 1.17159 1.23187 1.23276 0.94980 0.86348 0.99708 1.19342 0.96585 0.94405 0.94598 1.21055 0.98217 0.93496 0.95729 1.21270 0.97281 1.02170 0.93121 1.17925 1.01762 0.90179 0.87070 1.91495 1.87746 1.81526 1.51004 1.17773 0.97921 0.90138 0.91293 1.91498 1.72627 1.80752 1.66945 1.21110 0.98095 1.02165 0.92186 0.90721 0.89617 0.91292 0.91420 0.90798 0.93089 0.90739 0.92525 0.79689 0.93467 0.90259 0.90357 0.83578 0.81360 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.82 71.98 0.63 -1.72 16 2 C -0.06 -1.22 2.25 -12.29 -0.03 -1.24 16 3 H 0.12 2.05 7.58 -2.39 -0.02 2.03 16 4 C 0.53 13.09 7.08 87.66 0.62 13.71 16 5 O -0.57 -17.21 15.41 -3.02 -0.05 -17.26 16 6 N -0.61 -14.73 3.32 -811.75 -2.70 -17.43 16 7 C 0.12 2.72 6.46 86.73 0.56 3.28 16 8 C -0.11 -2.56 3.20 -9.61 -0.03 -2.59 16 9 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 10 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 11 C 0.17 5.25 3.16 46.39 0.15 5.39 16 12 H 0.06 2.13 8.00 -2.38 -0.02 2.11 16 13 N -0.73 -28.74 5.05 -316.33 -1.60 -30.34 16 14 C -0.23 -11.44 10.44 84.03 0.88 -10.57 16 15 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 16 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 17 N -0.98 -59.21 13.97 21.65 0.30 -58.91 16 18 Si 0.95 41.41 27.74 68.60 1.90 43.31 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.25 -9.47 6.52 99.48 0.65 -8.83 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 22 C 0.08 2.13 4.83 86.87 0.42 2.55 16 23 C -0.05 -0.94 4.40 -19.86 -0.09 -1.03 16 24 C -0.07 -1.23 7.92 22.27 0.18 -1.05 16 25 C -0.12 -2.11 10.02 22.31 0.22 -1.89 16 26 C 0.05 1.09 7.31 22.41 0.16 1.26 16 27 F -0.14 -3.24 17.18 44.97 0.77 -2.47 16 28 C 0.05 1.09 7.31 22.41 0.16 1.25 16 29 F -0.14 -3.42 17.18 44.97 0.77 -2.65 16 30 C -0.12 -2.28 9.65 22.30 0.22 -2.07 16 31 H 0.07 1.32 4.99 -2.39 -0.01 1.31 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.01 7.40 -2.39 -0.02 1.00 16 34 H 0.07 1.58 7.76 -2.39 -0.02 1.56 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 39 H 0.37 13.87 5.62 -92.71 -0.52 13.35 16 40 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 41 H 0.08 2.01 7.07 -2.38 -0.02 1.99 16 42 H 0.08 2.01 7.36 -2.39 -0.02 1.99 16 43 H 0.15 2.42 7.51 -2.91 -0.02 2.40 16 44 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.16 2.54 7.94 -2.91 -0.02 2.51 16 Total: -1.00 -65.32 372.39 5.04 -60.29 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.44 Total: 25.23 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.18 Total: 0.21 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.99 Total: -106.68 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.55 Total: -5.11 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.90 Total: 43.31 kcal Total: -65.32 5.04 -60.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082932246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.759 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds