Wall clock time and date at job start Tue Mar 31 2020 21:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47543 * 2 1 4 4 C 1.50702 * 109.47160 * 239.99556 * 2 1 3 5 5 O 1.21281 * 119.99739 * 333.01745 * 4 2 1 6 6 N 1.34770 * 119.99853 * 153.01870 * 4 2 1 7 7 C 1.47025 * 125.64814 * 184.36944 * 6 4 2 8 8 C 1.54329 * 107.26570 * 178.85068 * 7 6 4 9 9 H 1.09002 * 110.66905 * 96.52949 * 8 7 6 10 10 C 1.53007 * 110.84833 * 219.67119 * 8 7 6 11 11 C 1.55149 * 103.02347 * 338.14166 * 8 7 6 12 12 H 1.09001 * 111.00396 * 277.23560 * 11 8 7 13 13 N 1.46500 * 111.00668 * 153.38350 * 11 8 7 14 14 C 1.36940 * 120.00394 * 161.35200 * 13 11 8 15 15 H 1.08000 * 119.99351 * 359.97438 * 14 13 11 16 16 C 1.38804 * 120.00150 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46754 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47100 * 120.00033 * 18 16 14 21 21 H 1.48503 * 109.47069 * 240.00238 * 18 16 14 22 22 C 1.47430 * 125.65129 * 4.68116 * 6 4 2 23 23 C 1.50700 * 109.46878 * 119.99457 * 2 1 3 24 24 C 1.38235 * 119.98825 * 59.98172 * 23 2 1 25 25 C 1.38182 * 120.05034 * 179.97438 * 24 23 2 26 26 C 1.38496 * 120.02766 * 0.02562 * 25 24 23 27 27 F 1.35095 * 120.01425 * 179.97438 * 26 25 24 28 28 C 1.38397 * 119.97311 * 359.72636 * 26 25 24 29 29 C 1.38441 * 119.94980 * 0.52663 * 28 26 25 30 30 F 1.35099 * 120.01353 * 179.74401 * 29 28 26 31 31 H 1.08994 * 109.46915 * 175.45949 * 1 2 3 32 32 H 1.09002 * 109.47063 * 295.46105 * 1 2 3 33 33 H 1.08998 * 109.47066 * 55.45891 * 1 2 3 34 34 H 1.09001 * 109.88215 * 298.39685 * 7 6 4 35 35 H 1.08997 * 109.87788 * 59.55905 * 7 6 4 36 36 H 1.09002 * 109.47090 * 173.69456 * 10 8 7 37 37 H 1.08996 * 109.47223 * 293.69488 * 10 8 7 38 38 H 1.09001 * 109.47004 * 53.69891 * 10 8 7 39 39 H 0.97001 * 120.00044 * 341.34917 * 13 11 8 40 40 H 0.97004 * 119.99753 * 179.97438 * 17 16 14 41 41 H 1.08998 * 110.36325 * 322.92670 * 22 6 4 42 42 H 1.09001 * 110.36699 * 85.13975 * 22 6 4 43 43 H 1.07997 * 119.97114 * 0.02562 * 24 23 2 44 44 H 1.08000 * 119.98702 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.03011 * 180.27715 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3520 -1.5651 -1.7574 6 7 3.2376 -0.3962 -1.7451 7 6 3.8084 -0.9420 -2.9853 8 6 5.1852 -0.2749 -3.1881 9 1 5.9821 -0.9135 -2.8070 10 6 5.4182 0.0554 -4.6639 11 6 5.0721 1.0234 -2.3463 12 1 4.5671 1.8100 -2.9071 13 7 6.3907 1.4703 -1.8904 14 6 6.5695 2.7624 -1.4734 15 1 5.7384 3.4521 -1.4811 16 6 7.8187 3.1856 -1.0410 17 7 8.8314 2.3449 -1.0313 18 14 8.0628 4.9483 -0.4729 19 1 6.7781 5.6854 -0.5808 20 1 8.5204 4.9542 0.9397 21 1 9.0839 5.6067 -1.3268 22 6 4.2048 0.5468 -1.1545 23 6 2.0323 -0.7103 1.2306 24 6 1.6978 -2.0336 1.4494 25 6 2.1581 -2.6863 2.5770 26 6 2.9548 -2.0151 3.4896 27 9 3.4042 -2.6533 4.5923 28 6 3.2945 -0.6917 3.2690 29 6 2.8285 -0.0372 2.1416 30 9 3.1551 1.2561 1.9276 31 1 -0.3633 -1.0244 -0.0814 32 1 -0.3633 0.4418 0.9279 33 1 -0.3633 0.5827 -0.8465 34 1 3.9272 -2.0217 -2.8950 35 1 3.1573 -0.7077 -3.8274 36 1 6.3425 0.6238 -4.7675 37 1 5.4944 -0.8695 -5.2355 38 1 4.5836 0.6472 -5.0398 39 1 7.1372 0.8509 -1.8839 40 1 9.7045 2.6408 -0.7294 41 1 3.6839 1.3911 -0.7029 42 1 4.8222 0.0415 -0.4119 43 1 1.0770 -2.5579 0.7380 44 1 1.8965 -3.7203 2.7467 45 1 3.9193 -0.1687 3.9778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082932615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:29 Heat of formation + Delta-G solvation = -92.639998 kcal Electronic energy + Delta-G solvation = -30191.650571 eV Core-core repulsion = 25845.062009 eV Total energy + Delta-G solvation = -4346.588562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.18115 -49.07685 -40.37273 -38.94411 -37.62781 -34.16577 -34.10813 -32.43199 -31.01165 -30.74056 -29.28266 -27.57036 -26.76227 -24.46634 -23.99097 -23.30549 -22.30647 -21.23471 -19.93045 -18.91772 -18.39443 -17.64586 -17.20284 -16.86934 -16.33892 -16.12827 -15.86049 -15.51489 -15.44026 -15.19597 -14.61651 -14.49894 -14.20545 -13.96988 -13.64914 -13.19234 -13.11549 -13.03172 -12.90842 -12.88359 -12.66593 -12.39638 -12.10953 -11.99868 -11.83544 -11.66133 -11.44113 -11.24173 -11.13908 -11.01715 -10.75452 -10.64028 -10.24679 -9.94765 -9.89822 -9.74427 -9.25098 -9.05594 -8.76649 -8.40068 -7.11652 -5.87777 -3.18628 0.69291 0.81675 2.66702 3.04322 3.23165 3.37550 3.44101 3.45720 3.69149 4.19889 4.35671 4.36203 4.48001 4.59709 4.64681 4.84452 4.95369 5.07099 5.09839 5.15118 5.20857 5.48649 5.51160 5.61001 5.62010 5.67038 5.69161 5.73613 5.75245 5.78658 5.83051 5.89014 5.97430 5.98630 6.08993 6.18029 6.21452 6.32398 6.42459 6.48541 6.54650 6.57290 6.83105 7.61551 7.71572 8.24961 8.29967 9.41925 9.94797 10.29790 11.34216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.004227 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.130642 B = 6623.267072 C = 8316.115606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 H 0.106 0.894 4 C 0.536 3.464 5 O -0.549 6.549 6 N -0.608 5.608 7 C 0.117 3.883 8 C -0.114 4.114 9 H 0.084 0.916 10 C -0.134 4.134 11 C 0.178 3.822 12 H 0.066 0.934 13 N -0.710 5.710 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.071 3.929 23 C -0.120 4.120 24 C -0.050 4.050 25 C -0.164 4.164 26 C 0.129 3.871 27 F -0.132 7.132 28 C -0.190 4.190 29 C 0.145 3.855 30 F -0.119 7.119 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.852 -8.456 3.916 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.124 0.876 4 C 0.324 3.676 5 O -0.428 6.428 6 N -0.341 5.341 7 C -0.006 4.006 8 C -0.134 4.134 9 H 0.102 0.898 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.084 0.916 13 N -0.350 5.350 14 C -0.377 4.377 15 H 0.091 0.909 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.054 4.054 23 C -0.122 4.122 24 C -0.068 4.068 25 C -0.183 4.183 26 C 0.110 3.890 27 F -0.111 7.111 28 C -0.210 4.210 29 C 0.126 3.874 30 F -0.097 7.097 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.215 -8.689 3.735 17.915 hybrid contribution 0.836 0.944 0.742 1.463 sum -14.379 -7.745 4.476 16.935 Atomic orbital electron populations 1.21665 0.91106 1.03595 1.02308 1.20202 0.98414 1.00541 0.89943 0.87581 1.19935 0.80086 0.82825 0.84797 1.90652 1.56699 1.33001 1.62457 1.48547 1.16322 1.44195 1.25014 1.21989 0.94307 0.97903 0.86413 1.22485 0.95540 0.98172 0.97160 0.89778 1.21665 1.02560 1.00913 0.94016 1.21351 0.88113 0.93027 0.90969 0.91646 1.42297 1.04792 1.11072 1.76809 1.19263 0.94923 0.87533 1.36025 0.90941 1.24744 0.95828 0.97995 1.01761 1.69669 1.00821 1.34157 1.52992 0.86145 0.77694 0.84397 0.78108 1.20416 1.21760 1.21775 1.23585 0.90801 0.91445 0.99607 1.19565 1.00894 0.95368 0.96371 1.20852 0.97199 0.92614 0.96098 1.21169 1.00579 1.01557 0.94965 1.17319 0.96767 0.90278 0.84642 1.91530 1.87364 1.81505 1.50669 1.21047 1.05398 0.94652 0.99856 1.17129 0.96454 0.79499 0.94359 1.91586 1.90540 1.33239 1.94385 0.90997 0.91669 0.91649 0.91932 0.91552 0.91297 0.93167 0.92871 0.77844 0.93389 0.91125 0.91299 0.83479 0.83933 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.59 37.16 0.32 -1.03 16 2 C -0.07 -0.88 2.38 -92.92 -0.22 -1.10 16 3 H 0.11 1.37 5.67 -51.93 -0.29 1.08 16 4 C 0.54 8.13 6.56 -10.99 -0.07 8.06 16 5 O -0.55 -9.36 16.27 5.56 0.09 -9.27 16 6 N -0.61 -9.49 3.33 -170.51 -0.57 -10.06 16 7 C 0.12 1.71 6.48 -3.06 -0.02 1.69 16 8 C -0.11 -1.75 3.16 -88.78 -0.28 -2.03 16 9 H 0.08 1.35 7.99 -51.93 -0.42 0.93 16 10 C -0.13 -1.85 9.16 37.16 0.34 -1.51 16 11 C 0.18 3.27 3.14 -65.79 -0.21 3.06 16 12 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 13 N -0.71 -16.40 5.28 -51.36 -0.27 -16.67 16 14 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 18 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.07 1.22 6.42 -2.53 -0.02 1.20 16 23 C -0.12 -1.48 4.78 -104.54 -0.50 -1.98 16 24 C -0.05 -0.54 8.86 -39.60 -0.35 -0.90 16 25 C -0.16 -1.66 10.02 -39.51 -0.40 -2.06 16 26 C 0.13 1.47 7.30 -39.43 -0.29 1.18 16 27 F -0.13 -1.54 17.27 2.25 0.04 -1.50 16 28 C -0.19 -2.27 10.01 -39.45 -0.39 -2.67 16 29 C 0.15 1.89 7.25 -39.43 -0.29 1.60 16 30 F -0.12 -1.73 16.19 2.25 0.04 -1.70 16 31 H 0.07 0.76 7.10 -51.93 -0.37 0.39 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.39 9.58 7.71 -40.82 -0.31 9.27 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.15 1.53 7.54 -52.49 -0.40 1.13 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -29.40 379.59 -8.18 -37.58 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.31 Total: 8.78 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.62 Total: -3.33 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.40 -8.18 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082932615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.061 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds