Wall clock time and date at job start Tue Mar 31 2020 20:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.09010 * 110.64370 * 323.58745 * 7 6 4 9 9 C 1.55160 * 110.72312 * 86.73245 * 7 6 4 10 10 C 1.54910 * 101.58117 * 153.86275 * 9 7 6 11 11 N 1.47418 * 104.83362 * 322.99252 * 10 9 7 12 12 C 1.36942 * 125.64690 * 204.16434 * 11 10 9 13 13 H 1.07995 * 120.00021 * 179.97438 * 12 11 10 14 14 C 1.38817 * 119.99776 * 359.97438 * 12 11 10 15 15 N 1.31619 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47111 * 60.00087 * 16 14 12 18 18 H 1.48498 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47289 * 299.99997 * 16 14 12 20 20 C 1.47023 * 108.70534 * 24.12862 * 11 10 9 21 21 H 1.09002 * 109.87850 * 239.52273 * 20 11 10 22 22 C 1.52998 * 109.88177 * 118.35864 * 20 11 10 23 23 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 24 24 C 1.38255 * 119.96715 * 59.72394 * 23 2 1 25 25 C 1.38207 * 120.07700 * 179.76569 * 24 23 2 26 26 C 1.38417 * 119.99808 * 0.51265 * 25 24 23 27 27 F 1.35098 * 120.03753 * 179.72323 * 26 25 24 28 28 C 1.38653 * 119.92740 * 359.74222 * 26 25 24 29 29 F 1.35098 * 120.03288 * 179.97438 * 28 26 25 30 30 C 1.38213 * 119.96766 * 240.00059 * 23 2 1 31 31 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 33 33 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09002 * 111.00017 * 271.94108 * 9 7 6 36 36 H 1.08993 * 110.99869 * 35.75063 * 9 7 6 37 37 H 1.09002 * 110.36538 * 81.83755 * 10 9 7 38 38 H 1.08998 * 110.36029 * 204.03922 * 10 9 7 39 39 H 0.96995 * 119.99998 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.46908 * 302.19519 * 22 20 11 41 41 H 1.09001 * 109.47094 * 62.19154 * 22 20 11 42 42 H 1.08992 * 109.47422 * 182.19301 * 22 20 11 43 43 H 1.08009 * 119.96077 * 0.02562 * 24 23 2 44 44 H 1.08004 * 120.00736 * 180.25424 * 25 24 23 45 45 H 1.08005 * 120.00082 * 359.95544 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 3.2110 -1.3118 -3.4892 9 6 1.2448 -2.0915 -4.0539 10 6 1.5142 -2.2007 -5.5755 11 7 1.7118 -0.8106 -6.0246 12 6 1.5188 -0.3486 -7.2992 13 1 1.6911 0.6927 -7.5280 14 6 1.1017 -1.2188 -8.2971 15 7 0.8922 -2.4879 -8.0183 16 14 0.8377 -0.5884 -10.0356 17 1 2.1100 -0.0277 -10.5573 18 1 0.3968 -1.7077 -10.9063 19 1 -0.2028 0.4709 -10.0254 20 6 2.1496 -0.0022 -4.8773 21 1 1.4385 0.8046 -4.6995 22 6 3.5399 0.5760 -5.1484 23 6 2.0323 -0.7103 1.2305 24 6 1.6932 -2.0323 1.4516 25 6 2.1566 -2.6873 2.5769 26 6 2.9525 -2.0167 3.4895 27 9 3.4013 -2.6547 4.5925 28 6 3.2883 -0.6894 3.2705 29 9 4.0645 -0.0327 4.1600 30 6 2.8269 -0.0379 2.1398 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1493 0.5388 -2.5436 35 1 1.5118 -3.0162 -3.5424 36 1 0.2061 -1.8252 -3.8586 37 1 2.4121 -2.7905 -5.7604 38 1 0.6577 -2.6465 -6.0812 39 1 0.6003 -3.0958 -8.7155 40 1 4.2395 -0.2367 -5.3443 41 1 3.4966 1.2350 -6.0156 42 1 3.8742 1.1415 -4.2787 43 1 1.0688 -2.5549 0.7420 44 1 1.8944 -3.7212 2.7464 45 1 3.0880 0.9959 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089050836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:55 Heat of formation + Delta-G solvation = -79.461032 kcal Electronic energy + Delta-G solvation = -29130.450819 eV Core-core repulsion = 24784.433739 eV Total energy + Delta-G solvation = -4346.017079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.67794 -48.75572 -40.49265 -38.95050 -37.53091 -34.37548 -33.96127 -32.00036 -31.18452 -30.42450 -29.44603 -28.50919 -25.46729 -24.41445 -24.03255 -23.55301 -22.28616 -20.48788 -20.14951 -19.53887 -18.19300 -17.63684 -17.26349 -16.85597 -16.57792 -16.43170 -15.96086 -15.32387 -15.17092 -14.86714 -14.72248 -14.59298 -14.24352 -13.99692 -13.92408 -13.48749 -13.28364 -13.14082 -12.84825 -12.68865 -12.24494 -12.15162 -12.04191 -11.88919 -11.73710 -11.61684 -11.33476 -11.18889 -10.89015 -10.86381 -10.56743 -10.44982 -10.15831 -9.82565 -9.72265 -9.59058 -9.29678 -8.86345 -8.73529 -8.65995 -6.92210 -5.69587 -3.12706 0.63297 0.74848 2.67265 2.96835 3.35485 3.37302 3.42065 3.42968 3.54059 4.02037 4.14484 4.29246 4.44368 4.63268 4.73194 4.77992 4.85128 4.92939 5.20840 5.31774 5.37873 5.43514 5.48342 5.49488 5.52299 5.58938 5.63454 5.74789 5.77374 5.84046 6.06717 6.09695 6.19905 6.25931 6.29756 6.46781 6.49168 6.55372 6.66390 6.81993 7.05524 7.47170 7.57781 7.64317 7.80938 8.28817 8.32838 9.16343 9.77239 10.40753 11.33655 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.002197 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.072989 B =12739.274639 C =13003.984209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.109 0.891 4 C 0.516 3.484 5 O -0.533 6.533 6 N -0.712 5.712 7 C 0.135 3.865 8 H 0.091 0.909 9 C -0.151 4.151 10 C 0.153 3.847 11 N -0.595 5.595 12 C -0.222 4.222 13 H 0.077 0.923 14 C -0.009 4.009 15 N -0.921 5.921 16 Si 0.914 3.086 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.156 3.844 21 H 0.036 0.964 22 C -0.156 4.156 23 C -0.044 4.044 24 C -0.063 4.063 25 C -0.125 4.125 26 C 0.065 3.935 27 F -0.131 7.131 28 C 0.063 3.937 29 F -0.131 7.131 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.109 0.891 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 5.138 21.156 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.127 0.873 4 C 0.300 3.700 5 O -0.410 6.410 6 N -0.363 5.363 7 C 0.031 3.969 8 H 0.109 0.891 9 C -0.191 4.191 10 C 0.028 3.972 11 N -0.320 5.320 12 C -0.350 4.350 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.048 3.952 21 H 0.053 0.947 22 C -0.215 4.215 23 C -0.045 4.045 24 C -0.082 4.082 25 C -0.144 4.144 26 C 0.045 3.955 27 F -0.110 7.110 28 C 0.043 3.957 29 F -0.110 7.110 30 C -0.137 4.137 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.477 4.325 21.067 21.511 hybrid contribution 0.064 0.716 -0.628 0.954 sum -0.413 5.041 20.439 21.056 Atomic orbital electron populations 1.21827 0.91376 1.03537 1.03306 1.20331 0.98170 1.00439 0.90535 0.87336 1.20248 0.80547 0.84843 0.84328 1.90734 1.37638 1.26015 1.86569 1.46057 1.52846 1.31849 1.05515 1.22167 0.98544 0.93293 0.82903 0.89084 1.23383 0.98340 0.97054 1.00341 1.21944 1.01681 0.86257 0.87352 1.44475 1.78185 1.04823 1.04511 1.18969 1.38385 0.94066 0.83604 0.90517 1.24789 1.01874 0.95602 0.98246 1.69779 1.52620 1.02728 1.31775 0.86162 0.77955 0.77409 0.84003 1.21220 1.21577 1.21169 1.20983 0.94046 0.92672 0.87541 0.94682 1.22246 0.98595 1.00643 1.00037 1.19221 0.96629 0.94168 0.94500 1.20918 0.98204 0.93515 0.95523 1.21072 0.98124 1.01237 0.93957 1.17712 1.01027 0.90025 0.86772 1.91520 1.87594 1.81453 1.50435 1.17556 0.97417 0.89815 0.90888 1.91522 1.72359 1.80520 1.66562 1.20911 0.98790 1.01291 0.92741 0.91476 0.91090 0.91058 0.76771 0.92018 0.92012 0.96822 0.87352 0.93608 0.92925 0.92704 0.94364 0.84236 0.83603 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.90 37.16 0.33 -0.61 16 2 C -0.07 -0.62 2.90 -92.93 -0.27 -0.89 16 3 H 0.11 0.68 7.87 -51.93 -0.41 0.27 16 4 C 0.52 6.47 7.02 -10.99 -0.08 6.39 16 5 O -0.53 -8.78 14.85 5.55 0.08 -8.70 16 6 N -0.71 -9.07 5.10 -52.03 -0.27 -9.34 16 7 C 0.14 2.29 2.76 -66.09 -0.18 2.10 16 8 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 9 C -0.15 -2.83 6.77 -24.58 -0.17 -3.00 16 10 C 0.15 3.59 5.89 -2.53 -0.01 3.58 16 11 N -0.59 -14.27 3.13 -162.58 -0.51 -14.78 16 12 C -0.22 -5.87 9.89 -15.06 -0.15 -6.02 16 13 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 15 N -0.92 -26.09 10.09 55.49 0.56 -25.53 16 16 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.16 2.95 3.48 -66.95 -0.23 2.72 16 21 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 22 C -0.16 -2.76 9.14 37.16 0.34 -2.42 16 23 C -0.04 -0.42 4.39 -104.63 -0.46 -0.88 16 24 C -0.06 -0.62 7.93 -39.59 -0.31 -0.94 16 25 C -0.13 -1.19 10.02 -39.53 -0.40 -1.59 16 26 C 0.06 0.71 7.31 -39.36 -0.29 0.42 16 27 F -0.13 -1.54 17.18 2.25 0.04 -1.50 16 28 C 0.06 0.68 7.31 -39.36 -0.29 0.40 16 29 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 30 C -0.12 -1.10 9.65 -39.53 -0.38 -1.48 16 31 H 0.07 0.48 7.37 -51.93 -0.38 0.10 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 34 H 0.40 4.05 7.73 -40.82 -0.32 3.74 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.14 1.31 7.51 -52.48 -0.39 0.92 16 44 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.15 1.01 7.94 -52.48 -0.42 0.59 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -31.13 375.29 -8.39 -39.52 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.32 Total: 2.32 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.64 Total: -2.57 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.21 Total: -49.65 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.13 -8.39 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089050836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.943 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds