Wall clock time and date at job start Tue Mar 31 2020 20:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.09010 * 110.64370 * 323.58745 * 7 6 4 9 9 C 1.55160 * 110.72312 * 86.73245 * 7 6 4 10 10 C 1.54910 * 101.58117 * 153.86275 * 9 7 6 11 11 N 1.47418 * 104.83362 * 322.99252 * 10 9 7 12 12 C 1.36942 * 125.64690 * 204.16434 * 11 10 9 13 13 H 1.07995 * 120.00021 * 179.97438 * 12 11 10 14 14 C 1.38817 * 119.99776 * 359.97438 * 12 11 10 15 15 N 1.31619 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47111 * 60.00087 * 16 14 12 18 18 H 1.48498 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47289 * 299.99997 * 16 14 12 20 20 C 1.47023 * 108.70534 * 24.12862 * 11 10 9 21 21 H 1.09002 * 109.87850 * 239.52273 * 20 11 10 22 22 C 1.52998 * 109.88177 * 118.35864 * 20 11 10 23 23 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 24 24 C 1.38255 * 119.96715 * 59.72394 * 23 2 1 25 25 C 1.38207 * 120.07700 * 179.76569 * 24 23 2 26 26 C 1.38417 * 119.99808 * 0.51265 * 25 24 23 27 27 F 1.35098 * 120.03753 * 179.72323 * 26 25 24 28 28 C 1.38653 * 119.92740 * 359.74222 * 26 25 24 29 29 F 1.35098 * 120.03288 * 179.97438 * 28 26 25 30 30 C 1.38213 * 119.96766 * 240.00059 * 23 2 1 31 31 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 33 33 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09002 * 111.00017 * 271.94108 * 9 7 6 36 36 H 1.08993 * 110.99869 * 35.75063 * 9 7 6 37 37 H 1.09002 * 110.36538 * 81.83755 * 10 9 7 38 38 H 1.08998 * 110.36029 * 204.03922 * 10 9 7 39 39 H 0.96995 * 119.99998 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.46908 * 302.19519 * 22 20 11 41 41 H 1.09001 * 109.47094 * 62.19154 * 22 20 11 42 42 H 1.08992 * 109.47422 * 182.19301 * 22 20 11 43 43 H 1.08009 * 119.96077 * 0.02562 * 24 23 2 44 44 H 1.08004 * 120.00736 * 180.25424 * 25 24 23 45 45 H 1.08005 * 120.00082 * 359.95544 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 3.2110 -1.3118 -3.4892 9 6 1.2448 -2.0915 -4.0539 10 6 1.5142 -2.2007 -5.5755 11 7 1.7118 -0.8106 -6.0246 12 6 1.5188 -0.3486 -7.2992 13 1 1.6911 0.6927 -7.5280 14 6 1.1017 -1.2188 -8.2971 15 7 0.8922 -2.4879 -8.0183 16 14 0.8377 -0.5884 -10.0356 17 1 2.1100 -0.0277 -10.5573 18 1 0.3968 -1.7077 -10.9063 19 1 -0.2028 0.4709 -10.0254 20 6 2.1496 -0.0022 -4.8773 21 1 1.4385 0.8046 -4.6995 22 6 3.5399 0.5760 -5.1484 23 6 2.0323 -0.7103 1.2305 24 6 1.6932 -2.0323 1.4516 25 6 2.1566 -2.6873 2.5769 26 6 2.9525 -2.0167 3.4895 27 9 3.4013 -2.6547 4.5925 28 6 3.2883 -0.6894 3.2705 29 9 4.0645 -0.0327 4.1600 30 6 2.8269 -0.0379 2.1398 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.1493 0.5388 -2.5436 35 1 1.5118 -3.0162 -3.5424 36 1 0.2061 -1.8252 -3.8586 37 1 2.4121 -2.7905 -5.7604 38 1 0.6577 -2.6465 -6.0812 39 1 0.6003 -3.0958 -8.7155 40 1 4.2395 -0.2367 -5.3443 41 1 3.4966 1.2350 -6.0156 42 1 3.8742 1.1415 -4.2787 43 1 1.0688 -2.5549 0.7420 44 1 1.8944 -3.7212 2.7464 45 1 3.0880 0.9959 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089050836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:54 Heat of formation + Delta-G solvation = -97.037680 kcal Electronic energy + Delta-G solvation = -29131.212999 eV Core-core repulsion = 24784.433739 eV Total energy + Delta-G solvation = -4346.779260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.51656 -49.60174 -41.44350 -40.01097 -38.90767 -35.57445 -35.03689 -33.66446 -32.02447 -31.91062 -30.61858 -29.80973 -26.72197 -25.85588 -25.37642 -24.28783 -23.25718 -22.03461 -21.47490 -20.82148 -19.00611 -18.69214 -18.49292 -18.09357 -17.57826 -17.35348 -17.08789 -16.65611 -16.14259 -16.02899 -15.84214 -15.56291 -15.51916 -15.29077 -14.95486 -14.78940 -14.32956 -14.07738 -13.97244 -13.80922 -13.66765 -13.30055 -13.21136 -12.95136 -12.90330 -12.70472 -12.58555 -12.56657 -12.45474 -12.17088 -12.06382 -11.99512 -11.94962 -11.54467 -11.40985 -10.74770 -10.68935 -10.05472 -9.94470 -9.65224 -8.87344 -7.72806 -5.17539 -0.14379 0.02235 1.49682 1.52104 1.58216 1.69999 2.06889 2.45637 2.56315 2.77907 3.26420 3.37670 3.40684 3.54821 3.63355 3.88067 3.89667 3.99857 4.06316 4.10884 4.22952 4.26685 4.29905 4.53755 4.65397 4.69501 4.73753 4.79252 4.83966 4.85106 4.93934 4.97766 4.99473 5.06304 5.09701 5.17645 5.32528 5.40009 5.41956 5.52685 5.63177 5.68238 5.72988 5.83306 6.33218 6.64846 7.13564 7.33347 7.81880 8.45004 9.28758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.002197 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.072989 B =12739.274639 C =13003.984209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 H 0.142 0.858 4 C 0.516 3.484 5 O -0.574 6.574 6 N -0.701 5.701 7 C 0.155 3.845 8 H 0.075 0.925 9 C -0.135 4.135 10 C 0.157 3.843 11 N -0.614 5.614 12 C -0.226 4.226 13 H 0.086 0.914 14 C -0.069 4.069 15 N -0.951 5.951 16 Si 0.977 3.023 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.274 1.274 20 C 0.151 3.849 21 H 0.056 0.944 22 C -0.148 4.148 23 C -0.049 4.049 24 C -0.070 4.070 25 C -0.126 4.126 26 C 0.047 3.953 27 F -0.141 7.141 28 C 0.048 3.952 29 F -0.139 7.139 30 C -0.111 4.111 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.072 0.928 37 H -0.020 1.020 38 H 0.076 0.924 39 H 0.245 0.755 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 7.740 22.212 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 H 0.160 0.840 4 C 0.303 3.697 5 O -0.453 6.453 6 N -0.353 5.353 7 C 0.048 3.952 8 H 0.093 0.907 9 C -0.175 4.175 10 C 0.031 3.969 11 N -0.339 5.339 12 C -0.355 4.355 13 H 0.103 0.897 14 C -0.261 4.261 15 N -0.601 5.601 16 Si 0.805 3.195 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.200 1.200 20 C 0.044 3.956 21 H 0.074 0.926 22 C -0.207 4.207 23 C -0.050 4.050 24 C -0.088 4.088 25 C -0.144 4.144 26 C 0.027 3.973 27 F -0.120 7.120 28 C 0.028 3.972 29 F -0.118 7.118 30 C -0.130 4.130 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.091 0.909 37 H -0.002 1.002 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.159 0.841 44 H 0.179 0.821 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.139 6.988 22.161 23.264 hybrid contribution 0.294 -0.100 -0.912 0.963 sum -0.845 6.888 21.249 22.354 Atomic orbital electron populations 1.21875 0.89660 1.03549 1.04881 1.20353 0.99351 1.01145 0.87352 0.84045 1.20974 0.79417 0.84239 0.85032 1.90733 1.39450 1.27980 1.87132 1.45826 1.53024 1.32137 1.04330 1.21657 0.97304 0.92291 0.83899 0.90653 1.23162 0.99479 0.98260 0.96610 1.21658 0.98726 0.86052 0.90468 1.44719 1.78466 1.05491 1.05232 1.19353 1.36910 0.94413 0.84801 0.89671 1.25594 1.02727 0.95917 1.01912 1.70038 1.54098 1.03764 1.32228 0.85175 0.78003 0.76663 0.79630 1.20755 1.22520 1.20004 1.21211 0.94925 0.92902 0.86545 0.92636 1.22139 0.97274 1.00041 1.01246 1.19414 0.96511 0.94135 0.94954 1.21076 0.98260 0.94027 0.95481 1.21250 0.97587 1.02000 0.93582 1.17967 1.01884 0.90474 0.86981 1.91488 1.87841 1.81689 1.51002 1.17806 0.97955 0.89955 0.91530 1.91497 1.72695 1.80638 1.66980 1.21154 0.97736 1.02389 0.91695 0.92335 0.89133 0.89905 0.74755 0.91819 0.90896 1.00164 0.90625 0.94519 0.94926 0.93528 0.90835 0.84054 0.82093 0.81073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.90 71.98 0.64 -0.66 16 2 C -0.06 -0.79 2.90 -12.29 -0.04 -0.83 16 3 H 0.14 0.98 7.87 -2.39 -0.02 0.96 16 4 C 0.52 11.43 7.02 87.66 0.62 12.04 16 5 O -0.57 -17.93 14.85 -3.04 -0.05 -17.98 16 6 N -0.70 -15.58 5.10 -436.90 -2.23 -17.81 16 7 C 0.15 4.96 2.76 46.18 0.13 5.09 16 8 H 0.08 2.72 7.40 -2.38 -0.02 2.70 16 9 C -0.14 -5.00 6.77 31.99 0.22 -4.78 16 10 C 0.16 7.59 5.89 86.86 0.51 8.10 16 11 N -0.61 -29.48 3.13 -668.27 -2.09 -31.56 16 12 C -0.23 -11.92 9.89 84.03 0.83 -11.08 16 13 H 0.09 4.25 7.83 -2.91 -0.02 4.22 16 14 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 15 N -0.95 -55.71 10.09 21.65 0.22 -55.49 16 16 Si 0.98 44.38 29.55 68.60 2.03 46.40 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C 0.15 5.44 3.48 45.34 0.16 5.60 16 21 H 0.06 1.82 7.69 -2.39 -0.02 1.81 16 22 C -0.15 -4.96 9.14 71.98 0.66 -4.31 16 23 C -0.05 -0.80 4.39 -19.87 -0.09 -0.89 16 24 C -0.07 -1.26 7.93 22.27 0.18 -1.08 16 25 C -0.13 -2.28 10.02 22.31 0.22 -2.05 16 26 C 0.05 1.00 7.31 22.41 0.16 1.16 16 27 F -0.14 -3.32 17.18 44.97 0.77 -2.55 16 28 C 0.05 0.97 7.31 22.41 0.16 1.13 16 29 F -0.14 -3.11 17.18 44.97 0.77 -2.34 16 30 C -0.11 -1.75 9.65 22.31 0.22 -1.54 16 31 H 0.06 0.66 7.37 -2.39 -0.02 0.64 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.60 7.56 -2.39 -0.02 0.58 16 34 H 0.41 6.61 7.73 -92.71 -0.72 5.89 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.08 4.19 5.88 -2.39 -0.01 4.17 16 39 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.05 1.62 8.04 -2.39 -0.02 1.61 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.14 2.45 7.51 -2.91 -0.02 2.43 16 44 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.17 1.69 7.94 -2.91 -0.02 1.67 16 Total: -1.00 -69.99 375.29 4.78 -65.21 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.30 Total: 13.55 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.04 Total: 2.56 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.10 Total: -104.86 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.05 Total: -17.98 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 1.55 Total: -4.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.99 4.78 -65.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089050836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.826 kcal (2) G-P(sol) polarization free energy of solvation -69.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds