Wall clock time and date at job start Tue Mar 31 2020 20:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46904 * 2 1 4 4 C 1.50702 * 109.46973 * 119.99634 * 2 1 3 5 5 N 1.31242 * 124.05800 * 300.17357 * 4 2 1 6 6 N 1.27337 * 120.04154 * 180.33664 * 5 4 2 7 7 S 1.56635 * 109.73804 * 359.71779 * 6 5 4 8 8 C 1.38239 * 124.05547 * 119.99960 * 4 2 1 9 9 C 1.47175 * 128.47833 * 0.02562 * 8 4 2 10 10 O 1.21622 * 119.99573 * 359.69576 * 9 8 4 11 11 N 1.34776 * 120.00441 * 179.69780 * 9 8 4 12 12 C 1.46494 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.77580 * 51.76189 * 13 12 11 15 15 C 1.54325 * 110.72022 * 288.52410 * 13 12 11 16 16 N 1.47290 * 107.30599 * 219.45263 * 15 13 12 17 17 C 1.36938 * 125.79079 * 178.92205 * 16 15 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47464 * 119.99742 * 21 19 17 24 24 H 1.48496 * 109.47378 * 240.00268 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 16 15 13 26 26 C 1.54908 * 104.92961 * 24.15407 * 25 16 15 27 27 H 1.09008 * 111.00422 * 81.04917 * 26 25 16 28 28 C 1.52999 * 111.00368 * 204.85960 * 26 25 16 29 29 H 1.08995 * 109.47255 * 300.00412 * 1 2 3 30 30 H 1.08996 * 109.47000 * 60.00345 * 1 2 3 31 31 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47255 * 239.99588 * 2 1 3 33 33 H 1.09003 * 109.47323 * 299.99514 * 3 2 1 34 34 H 1.09005 * 109.47528 * 59.99549 * 3 2 1 35 35 H 1.08999 * 109.47245 * 179.97438 * 3 2 1 36 36 H 0.96994 * 119.99369 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47310 * 60.00424 * 12 11 9 38 38 H 1.09004 * 109.47167 * 299.99783 * 12 11 9 39 39 H 1.09004 * 109.88239 * 338.86059 * 15 13 12 40 40 H 1.08999 * 109.88411 * 100.02489 * 15 13 12 41 41 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 42 42 H 1.09002 * 110.36696 * 265.26054 * 25 16 15 43 43 H 1.08995 * 110.36608 * 143.04891 * 25 16 15 44 44 H 1.09001 * 109.47276 * 58.55057 * 28 26 25 45 45 H 1.09003 * 109.46690 * 178.54597 * 28 26 25 46 46 H 1.08998 * 109.47248 * 298.54758 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7621 -0.3338 2.4584 6 7 2.2330 -0.9881 3.4441 7 16 3.0888 -2.1908 2.9202 8 6 2.8303 -1.8388 1.2015 9 6 3.3453 -2.5663 0.0303 10 8 3.0698 -2.1855 -1.0914 11 7 4.1221 -3.6544 0.2008 12 6 4.6342 -4.3788 -0.9650 13 6 5.4808 -5.5643 -0.4974 14 1 4.9325 -6.1704 0.2237 15 6 6.8172 -5.0781 0.1021 16 7 7.8629 -6.0164 -0.3400 17 6 9.1964 -5.9280 -0.0416 18 1 9.5603 -5.1153 0.5694 19 6 10.0805 -6.8830 -0.5245 20 7 9.6370 -7.8733 -1.2696 21 14 11.8995 -6.7629 -0.1169 22 1 12.1392 -5.5664 0.7294 23 1 12.3240 -7.9820 0.6171 24 1 12.6816 -6.6443 -1.3736 25 6 7.2335 -7.0686 -1.1587 26 6 5.9348 -6.4252 -1.7056 27 1 6.1439 -5.8009 -2.5744 28 6 4.8922 -7.4939 -2.0402 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.3420 -3.9578 1.0955 37 1 5.2475 -3.7093 -1.5681 38 1 3.7983 -4.7430 -1.5624 39 1 7.0427 -4.0750 -0.2599 40 1 6.7566 -5.0767 1.1904 41 1 10.2548 -8.5408 -1.6067 42 1 6.9969 -7.9370 -0.5439 43 1 7.8906 -7.3539 -1.9802 44 1 4.6690 -8.0762 -1.1462 45 1 3.9814 -7.0135 -2.3976 46 1 5.2834 -8.1532 -2.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093073209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:38 Heat of formation + Delta-G solvation = 45.021978 kcal Electronic energy + Delta-G solvation = -26973.261652 eV Core-core repulsion = 23218.775699 eV Total energy + Delta-G solvation = -3754.485953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.36835 -39.77992 -38.07134 -35.88206 -34.86303 -33.07535 -31.60090 -30.80731 -29.50600 -27.66905 -27.39980 -26.06718 -25.24417 -23.69699 -22.68350 -21.92709 -20.77429 -19.96515 -19.40106 -18.20028 -17.72289 -16.82767 -16.30420 -16.08129 -15.58804 -15.31412 -14.98954 -14.51917 -14.41692 -14.13793 -13.79007 -13.41348 -13.24856 -13.23715 -12.84496 -12.73794 -12.61345 -12.41716 -12.01112 -11.62962 -11.57562 -11.53035 -11.48620 -11.23078 -11.22117 -10.93219 -10.85692 -10.63906 -10.31446 -10.13479 -10.12850 -10.04353 -10.03399 -9.98282 -9.82690 -9.46853 -9.22068 -8.70491 -6.89070 -5.70403 -3.12383 -0.55723 0.51079 1.17910 1.65889 2.73853 2.80330 3.36271 3.42044 3.44321 3.57441 4.18523 4.40228 4.45592 4.73243 4.86203 4.87027 4.99068 5.12187 5.19901 5.40988 5.41448 5.44108 5.50021 5.59072 5.61802 5.65648 5.76920 5.78782 5.94792 5.96999 5.97444 6.07361 6.13600 6.17713 6.23864 6.45210 6.52051 6.53549 6.70531 6.85391 7.15019 7.37934 7.47798 7.58027 7.80917 7.83456 8.31059 9.16927 9.77464 10.42053 11.33308 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.002533 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.119316 B =11050.257136 C =11725.005760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.142 4.142 4 C 0.108 3.892 5 N -0.245 5.245 6 N -0.254 5.254 7 S 0.416 5.584 8 C -0.289 4.289 9 C 0.601 3.399 10 O -0.516 6.516 11 N -0.713 5.713 12 C 0.132 3.868 13 C -0.112 4.112 14 H 0.079 0.921 15 C 0.139 3.861 16 N -0.605 5.605 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.158 3.842 26 C -0.110 4.110 27 H 0.072 0.928 28 C -0.135 4.135 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.400 0.600 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.013 0.987 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 10.760 3.437 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.039 4.039 5 N -0.111 5.111 6 N -0.235 5.235 7 S 0.553 5.447 8 C -0.430 4.430 9 C 0.384 3.616 10 O -0.393 6.393 11 N -0.364 5.364 12 C 0.010 3.990 13 C -0.131 4.131 14 H 0.097 0.903 15 C 0.013 3.987 16 N -0.330 5.330 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.033 3.967 26 C -0.130 4.130 27 H 0.091 0.909 28 C -0.193 4.193 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.505 10.889 4.602 21.123 hybrid contribution 0.954 0.023 -0.462 1.060 sum -16.551 10.912 4.141 20.252 Atomic orbital electron populations 1.21803 0.93160 1.02221 1.02712 1.20180 0.96641 0.96198 0.92097 1.21808 1.01282 0.94178 1.02706 1.22954 0.94369 0.92390 0.94206 1.70544 1.20071 1.24286 0.96165 1.78908 1.13109 1.07168 1.24300 1.82680 1.39337 1.28232 0.94436 1.27833 1.10580 1.04429 1.00156 1.16427 0.78769 0.80176 0.86246 1.90771 1.58476 1.66612 1.23405 1.45998 1.50674 1.28384 1.11321 1.21606 0.97644 0.93104 0.86657 1.22536 0.96006 0.95254 0.99331 0.90304 1.21412 0.87486 0.93783 0.96024 1.44541 1.02651 1.26822 1.59025 1.19105 0.81423 1.08209 1.26334 0.90483 1.24786 0.98326 0.97236 1.00298 1.69798 1.32761 1.15171 1.39253 0.86007 0.84753 0.77262 0.77516 1.20542 1.21740 1.21709 1.21990 0.89394 0.89094 0.96184 1.22601 0.97853 0.96375 0.96170 0.90913 1.21657 0.97732 0.98556 1.01324 0.91870 0.91357 0.92646 0.85899 0.91335 0.91872 0.92555 0.76511 0.90568 0.90911 0.95729 0.96310 0.93742 0.96874 0.87530 0.93007 0.93648 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.16 37.16 0.34 -0.85 16 2 C -0.03 -0.29 3.25 -91.77 -0.30 -0.59 16 3 C -0.14 -1.24 9.16 37.15 0.34 -0.90 16 4 C 0.11 1.23 5.53 -82.84 -0.46 0.77 16 5 N -0.25 -2.95 11.51 33.42 0.38 -2.56 16 6 N -0.25 -2.94 12.51 60.35 0.75 -2.18 16 7 S 0.42 3.82 23.05 -107.50 -2.48 1.34 16 8 C -0.29 -3.20 6.81 -35.95 -0.24 -3.45 16 9 C 0.60 7.45 7.80 -12.63 -0.10 7.35 16 10 O -0.52 -7.62 14.54 5.26 0.08 -7.54 16 11 N -0.71 -8.18 5.47 -61.47 -0.34 -8.52 16 12 C 0.13 1.73 5.02 -4.04 -0.02 1.70 16 13 C -0.11 -1.69 2.43 -88.78 -0.22 -1.91 16 14 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 15 C 0.14 2.64 6.77 -2.92 -0.02 2.62 16 16 N -0.60 -14.74 3.40 -169.86 -0.58 -15.32 16 17 C -0.22 -6.01 10.28 -15.06 -0.15 -6.17 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.14 10.09 55.49 0.56 -25.58 16 21 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.16 3.61 5.35 -2.53 -0.01 3.60 16 26 C -0.11 -1.88 3.09 -88.47 -0.27 -2.15 16 27 H 0.07 1.27 8.05 -51.92 -0.42 0.85 16 28 C -0.13 -1.91 9.29 37.16 0.35 -1.57 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.12 1.39 5.49 -51.93 -0.29 1.11 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.40 3.88 7.90 -40.82 -0.32 3.56 16 37 H 0.08 1.10 7.93 -51.93 -0.41 0.68 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 43 H 0.11 2.80 5.86 -51.93 -0.30 2.49 16 44 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -30.80 385.51 -8.87 -39.66 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.17 Total: 0.23 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.87 Total: -1.94 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.78 Total: -54.17 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.80 -8.87 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093073209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.684 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds