Wall clock time and date at job start Tue Mar 31 2020 20:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46904 * 2 1 4 4 C 1.50702 * 109.46973 * 119.99634 * 2 1 3 5 5 N 1.31242 * 124.05800 * 300.17357 * 4 2 1 6 6 N 1.27337 * 120.04154 * 180.33664 * 5 4 2 7 7 S 1.56635 * 109.73804 * 359.71779 * 6 5 4 8 8 C 1.38239 * 124.05547 * 119.99960 * 4 2 1 9 9 C 1.47175 * 128.47833 * 0.02562 * 8 4 2 10 10 O 1.21622 * 119.99573 * 359.69576 * 9 8 4 11 11 N 1.34776 * 120.00441 * 179.69780 * 9 8 4 12 12 C 1.46494 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.77580 * 51.76189 * 13 12 11 15 15 C 1.54325 * 110.72022 * 288.52410 * 13 12 11 16 16 N 1.47290 * 107.30599 * 219.45263 * 15 13 12 17 17 C 1.36938 * 125.79079 * 178.92205 * 16 15 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47464 * 119.99742 * 21 19 17 24 24 H 1.48496 * 109.47378 * 240.00268 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 16 15 13 26 26 C 1.54908 * 104.92961 * 24.15407 * 25 16 15 27 27 H 1.09008 * 111.00422 * 81.04917 * 26 25 16 28 28 C 1.52999 * 111.00368 * 204.85960 * 26 25 16 29 29 H 1.08995 * 109.47255 * 300.00412 * 1 2 3 30 30 H 1.08996 * 109.47000 * 60.00345 * 1 2 3 31 31 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47255 * 239.99588 * 2 1 3 33 33 H 1.09003 * 109.47323 * 299.99514 * 3 2 1 34 34 H 1.09005 * 109.47528 * 59.99549 * 3 2 1 35 35 H 1.08999 * 109.47245 * 179.97438 * 3 2 1 36 36 H 0.96994 * 119.99369 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47310 * 60.00424 * 12 11 9 38 38 H 1.09004 * 109.47167 * 299.99783 * 12 11 9 39 39 H 1.09004 * 109.88239 * 338.86059 * 15 13 12 40 40 H 1.08999 * 109.88411 * 100.02489 * 15 13 12 41 41 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 42 42 H 1.09002 * 110.36696 * 265.26054 * 25 16 15 43 43 H 1.08995 * 110.36608 * 143.04891 * 25 16 15 44 44 H 1.09001 * 109.47276 * 58.55057 * 28 26 25 45 45 H 1.09003 * 109.46690 * 178.54597 * 28 26 25 46 46 H 1.08998 * 109.47248 * 298.54758 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7621 -0.3338 2.4584 6 7 2.2330 -0.9881 3.4441 7 16 3.0888 -2.1908 2.9202 8 6 2.8303 -1.8388 1.2015 9 6 3.3453 -2.5663 0.0303 10 8 3.0698 -2.1855 -1.0914 11 7 4.1221 -3.6544 0.2008 12 6 4.6342 -4.3788 -0.9650 13 6 5.4808 -5.5643 -0.4974 14 1 4.9325 -6.1704 0.2237 15 6 6.8172 -5.0781 0.1021 16 7 7.8629 -6.0164 -0.3400 17 6 9.1964 -5.9280 -0.0416 18 1 9.5603 -5.1153 0.5694 19 6 10.0805 -6.8830 -0.5245 20 7 9.6370 -7.8733 -1.2696 21 14 11.8995 -6.7629 -0.1169 22 1 12.1392 -5.5664 0.7294 23 1 12.3240 -7.9820 0.6171 24 1 12.6816 -6.6443 -1.3736 25 6 7.2335 -7.0686 -1.1587 26 6 5.9348 -6.4252 -1.7056 27 1 6.1439 -5.8009 -2.5744 28 6 4.8922 -7.4939 -2.0402 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.3420 -3.9578 1.0955 37 1 5.2475 -3.7093 -1.5681 38 1 3.7983 -4.7430 -1.5624 39 1 7.0427 -4.0750 -0.2599 40 1 6.7566 -5.0767 1.1904 41 1 10.2548 -8.5408 -1.6067 42 1 6.9969 -7.9370 -0.5439 43 1 7.8906 -7.3539 -1.9802 44 1 4.6690 -8.0762 -1.1462 45 1 3.9814 -7.0135 -2.3976 46 1 5.2834 -8.1532 -2.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093073209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:37 Heat of formation + Delta-G solvation = 25.588789 kcal Electronic energy + Delta-G solvation = -26974.104338 eV Core-core repulsion = 23218.775699 eV Total energy + Delta-G solvation = -3755.328639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21480 -40.81740 -39.51124 -36.68237 -36.07797 -34.72847 -32.54650 -32.47538 -30.78632 -28.66416 -28.06322 -27.77018 -26.61425 -24.92299 -23.86526 -22.82715 -21.77089 -21.54114 -20.71012 -19.05209 -18.89825 -18.53225 -17.25239 -17.08585 -16.91220 -16.37251 -16.16717 -15.83947 -15.57079 -15.27698 -15.15512 -14.68144 -14.32176 -14.09742 -14.07945 -13.99795 -13.53285 -13.43241 -13.35463 -13.05167 -13.02284 -12.75706 -12.68110 -12.44974 -12.23940 -12.23307 -12.01789 -11.92864 -11.80440 -11.58986 -11.50494 -11.38405 -11.19260 -10.98174 -10.91447 -10.82785 -10.73107 -10.22412 -8.85354 -7.75770 -5.19544 -1.40185 -0.29139 0.36893 0.79971 1.47155 1.47686 1.57591 1.79414 1.84627 2.49971 2.75761 3.33615 3.37016 3.51726 3.67388 3.81538 3.89702 3.96873 4.00217 4.14685 4.16170 4.39606 4.53470 4.64168 4.67283 4.78713 4.79303 4.81076 4.87881 4.91651 4.92877 4.99183 5.08539 5.13692 5.15900 5.28037 5.30421 5.40847 5.42867 5.43134 5.52951 5.76238 5.87632 6.22913 6.34837 6.54592 6.89807 7.13463 7.81222 8.44525 9.25612 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.002533 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.119316 B =11050.257136 C =11725.005760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.138 4.138 4 C 0.105 3.895 5 N -0.263 5.263 6 N -0.280 5.280 7 S 0.490 5.510 8 C -0.309 4.309 9 C 0.605 3.395 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.144 3.856 13 C -0.092 4.092 14 H 0.099 0.901 15 C 0.133 3.867 16 N -0.629 5.629 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.947 5.947 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.160 3.840 26 C -0.099 4.099 27 H 0.068 0.932 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.031 0.969 41 H 0.246 0.754 42 H -0.010 1.010 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.915 11.525 4.188 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C -0.196 4.196 4 C -0.043 4.043 5 N -0.127 5.127 6 N -0.261 5.261 7 S 0.627 5.373 8 C -0.450 4.450 9 C 0.389 3.611 10 O -0.420 6.420 11 N -0.357 5.357 12 C 0.021 3.979 13 C -0.111 4.111 14 H 0.117 0.883 15 C 0.008 3.992 16 N -0.355 5.355 17 C -0.363 4.363 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.035 3.965 26 C -0.119 4.119 27 H 0.087 0.913 28 C -0.186 4.186 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.247 0.753 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.008 0.992 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.885 11.676 5.390 22.848 hybrid contribution 1.408 -0.226 -0.636 1.561 sum -17.478 11.450 4.754 21.429 Atomic orbital electron populations 1.21776 0.92026 1.02144 1.03462 1.20223 0.97595 0.96499 0.91074 1.21788 1.00646 0.93653 1.03497 1.23193 0.94175 0.92492 0.94471 1.70595 1.20917 1.24948 0.96260 1.78704 1.14078 1.08393 1.24921 1.82368 1.36896 1.25905 0.92179 1.27757 1.11335 1.04811 1.01091 1.16479 0.78378 0.80003 0.86216 1.90764 1.59408 1.67272 1.24540 1.45845 1.50343 1.28108 1.11451 1.21368 0.97535 0.91998 0.86968 1.22377 0.94469 0.95835 0.98413 0.88296 1.21624 0.88064 0.92681 0.96795 1.44865 1.02996 1.28065 1.59573 1.19456 0.83150 1.07972 1.25765 0.90280 1.25581 1.02207 0.97378 1.00834 1.70061 1.33562 1.15768 1.40361 0.85042 0.80081 0.77347 0.77068 1.19194 1.21996 1.22033 1.21764 0.91384 0.88882 0.94429 1.22420 0.95890 0.97085 0.96499 0.91327 1.21614 0.97772 0.97693 1.01507 0.92009 0.89689 0.93118 0.87162 0.89641 0.91967 0.93485 0.75343 0.91851 0.89402 0.95899 0.95148 0.94440 0.99203 0.91481 0.92567 0.90563 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.16 71.98 0.66 -1.47 16 2 C -0.03 -0.61 3.25 -11.54 -0.04 -0.64 16 3 C -0.14 -2.28 9.16 71.98 0.66 -1.62 16 4 C 0.11 2.26 5.53 42.65 0.24 2.50 16 5 N -0.26 -6.02 11.51 -48.18 -0.55 -6.57 16 6 N -0.28 -6.04 12.51 37.02 0.46 -5.57 16 7 S 0.49 7.86 23.05 -56.49 -1.30 6.56 16 8 C -0.31 -6.32 6.81 24.62 0.17 -6.16 16 9 C 0.61 13.89 7.80 86.59 0.68 14.56 16 10 O -0.54 -15.26 14.54 -4.10 -0.06 -15.32 16 11 N -0.71 -14.39 5.47 -466.63 -2.55 -16.94 16 12 C 0.14 3.39 5.02 86.38 0.43 3.82 16 13 C -0.09 -2.56 2.43 -9.60 -0.02 -2.59 16 14 H 0.10 2.43 8.01 -2.39 -0.02 2.41 16 15 C 0.13 4.89 6.77 86.68 0.59 5.48 16 16 N -0.63 -30.89 3.40 -691.31 -2.35 -33.25 16 17 C -0.23 -12.79 10.28 84.03 0.86 -11.93 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 20 N -0.95 -55.49 10.09 21.65 0.22 -55.27 16 21 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.16 7.47 5.35 86.85 0.47 7.93 16 26 C -0.10 -3.27 3.09 -9.40 -0.03 -3.29 16 27 H 0.07 2.33 8.05 -2.38 -0.02 2.31 16 28 C -0.13 -3.35 9.29 71.98 0.67 -2.69 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.11 2.42 5.49 -2.39 -0.01 2.41 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.41 6.69 7.90 -92.71 -0.73 5.96 16 37 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 38 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.02 0.86 7.68 -2.38 -0.02 0.84 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H -0.01 -0.50 8.04 -2.39 -0.02 -0.52 16 43 H 0.07 3.67 5.86 -2.39 -0.01 3.66 16 44 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -68.22 385.51 1.94 -66.28 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.26 Total: 12.40 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.79 Total: 0.62 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -4.78 Total: -117.61 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.06 Total: -15.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 7.86 SS G_CDS: -1.30 Total: 6.56 kcal Total: -68.22 1.94 -66.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093073209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.873 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds