Wall clock time and date at job start Tue Mar 31 2020 21:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47087 * 2 1 4 4 C 1.50690 * 109.47334 * 239.99710 * 2 1 3 5 5 O 1.21288 * 120.00265 * 240.00284 * 4 2 1 6 6 N 1.34783 * 120.00096 * 60.00202 * 4 2 1 7 7 C 1.46502 * 119.99829 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46915 * 179.97438 * 7 6 4 9 9 C 1.53780 * 113.61504 * 274.13337 * 8 7 6 10 10 C 1.53950 * 87.01786 * 220.04868 * 9 8 7 11 11 N 1.46503 * 113.53574 * 270.81077 * 10 9 8 12 12 C 1.36938 * 120.00054 * 252.49482 * 11 10 9 13 13 H 1.08009 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00404 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00653 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99618 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47043 * 89.99977 * 16 14 12 18 18 H 1.48503 * 109.47053 * 209.99797 * 16 14 12 19 19 H 1.48497 * 109.47050 * 329.99529 * 16 14 12 20 20 C 1.53774 * 87.11350 * 25.36133 * 10 9 8 21 21 C 1.50704 * 109.46891 * 119.99554 * 2 1 3 22 22 C 1.38418 * 120.02536 * 240.00402 * 21 2 1 23 23 F 1.35101 * 120.01224 * 0.25068 * 22 21 2 24 24 C 1.38475 * 119.97347 * 179.97438 * 22 21 2 25 25 C 1.38206 * 120.02649 * 359.97438 * 24 22 21 26 26 C 1.38207 * 120.04924 * 0.04467 * 25 24 22 27 27 C 1.38421 * 120.02416 * 60.02171 * 21 2 1 28 28 F 1.35098 * 120.01074 * 0.02562 * 27 21 2 29 29 H 1.08995 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47309 * 300.00631 * 1 2 3 31 31 H 1.09000 * 109.47118 * 60.00403 * 1 2 3 32 32 H 0.96998 * 120.00002 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46742 * 299.99236 * 7 6 4 34 34 H 1.08995 * 109.47584 * 59.99671 * 7 6 4 35 35 H 1.09002 * 112.84698 * 45.33088 * 8 7 6 36 36 H 1.08996 * 113.61266 * 334.56866 * 9 8 7 37 37 H 1.09004 * 113.61482 * 105.46733 * 9 8 7 38 38 H 1.08996 * 113.74311 * 139.94843 * 10 9 8 39 39 H 0.96999 * 120.00013 * 72.49387 * 11 10 9 40 40 H 0.97001 * 120.00257 * 180.02562 * 15 14 12 41 41 H 1.09001 * 113.61368 * 220.08831 * 20 10 9 42 42 H 1.09006 * 113.61354 * 89.19087 * 20 10 9 43 43 H 1.07998 * 119.98270 * 179.97438 * 24 22 21 44 44 H 1.08001 * 119.97561 * 180.02562 * 25 24 22 45 45 H 1.07998 * 119.98975 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2500 -2.4545 7 6 2.1948 -0.9410 -3.6506 8 6 1.6845 -0.2201 -4.9000 9 6 0.2836 -0.6735 -5.3437 10 6 0.8035 -0.5921 -6.7905 11 7 0.6250 0.7267 -7.4030 12 6 -0.3244 0.9084 -8.3729 13 1 -0.9420 0.0794 -8.6861 14 6 -0.4940 2.1580 -8.9529 15 7 -1.4069 2.3327 -9.8848 16 14 0.5736 3.5918 -8.4108 17 1 1.7973 3.6430 -9.2504 18 1 -0.1850 4.8593 -8.5636 19 1 0.9570 3.4130 -6.9873 20 6 2.2114 -0.8184 -6.2149 21 6 2.0323 -0.7103 1.2306 22 6 2.8281 -0.0381 2.1421 23 9 3.1507 1.2568 1.9315 24 6 3.2886 -0.6917 3.2727 25 6 2.9535 -2.0145 3.4914 26 6 2.1594 -2.6869 2.5818 27 6 1.6986 -2.0357 1.4500 28 9 0.9227 -2.6932 0.5607 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 3.2848 -0.9413 -3.6507 34 1 1.8312 -1.9685 -3.6505 35 1 1.7938 0.8626 -4.8382 36 1 0.0314 -1.6853 -5.0267 37 1 -0.5008 0.0494 -5.1193 38 1 0.4564 -1.4052 -7.4279 39 1 1.1793 1.4713 -7.1215 40 1 -1.5251 3.2059 -10.2904 41 1 2.9811 -0.2125 -6.6928 42 1 2.4872 -1.8701 -6.1365 43 1 3.9098 -0.1674 3.9837 44 1 3.3128 -2.5234 4.3737 45 1 1.8985 -3.7207 2.7535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100506807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:12 Heat of formation + Delta-G solvation = -70.856362 kcal Electronic energy + Delta-G solvation = -28898.771139 eV Core-core repulsion = 24553.127186 eV Total energy + Delta-G solvation = -4345.643953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.40551 -49.23090 -40.31098 -39.12534 -38.51356 -34.79479 -34.66315 -33.22526 -30.76212 -30.66717 -29.97805 -27.59373 -25.23098 -25.08891 -23.60802 -23.24274 -22.57950 -21.68015 -20.31476 -18.67411 -18.46392 -17.96376 -17.69706 -17.06284 -16.53114 -16.14507 -15.90420 -15.83798 -15.58636 -15.38417 -15.01959 -14.74854 -14.46403 -14.25380 -14.19830 -13.65723 -13.52096 -13.12582 -13.00287 -12.77390 -12.64768 -12.49406 -12.46213 -12.28952 -12.07532 -11.89477 -11.57452 -11.39474 -11.29513 -10.93971 -10.53145 -10.30100 -10.17873 -9.89017 -9.69014 -9.56301 -9.26317 -9.09908 -9.08306 -8.93727 -7.33425 -5.82591 -3.18927 0.55500 0.62351 2.50403 2.86259 3.17516 3.31776 3.35069 3.40835 3.53034 3.90370 4.03718 4.21916 4.37452 4.53062 4.59115 4.71295 4.75929 4.85737 4.90290 4.92498 5.06343 5.24122 5.35063 5.36704 5.38476 5.41203 5.48831 5.50813 5.57158 5.63403 5.73344 5.74831 5.79765 5.84181 5.90192 6.10430 6.20826 6.31384 6.37034 6.46544 6.59459 6.71514 6.86674 7.38992 7.95216 8.09294 8.37046 9.14732 9.86941 10.06169 11.35468 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.002246 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.419110 B =12464.970100 C =13009.742942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 H 0.113 0.887 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.721 5.721 7 C 0.132 3.868 8 C -0.124 4.124 9 C -0.166 4.166 10 C 0.173 3.827 11 N -0.730 5.730 12 C -0.247 4.247 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.884 3.116 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.148 4.148 21 C -0.140 4.140 22 C 0.135 3.865 23 F -0.130 7.130 24 C -0.169 4.169 25 C -0.061 4.061 26 C -0.168 4.168 27 C 0.164 3.836 28 F -0.121 7.121 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 -7.355 29.714 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.131 0.869 4 C 0.303 3.697 5 O -0.411 6.411 6 N -0.372 5.372 7 C 0.009 3.991 8 C -0.142 4.142 9 C -0.207 4.207 10 C 0.061 3.939 11 N -0.370 5.370 12 C -0.376 4.376 13 H 0.110 0.890 14 C -0.191 4.191 15 N -0.579 5.579 16 Si 0.715 3.285 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.188 4.188 21 C -0.142 4.142 22 C 0.115 3.885 23 F -0.108 7.108 24 C -0.188 4.188 25 C -0.079 4.079 26 C -0.187 4.187 27 C 0.144 3.856 28 F -0.099 7.099 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.500 -8.057 29.505 31.744 hybrid contribution 0.430 1.735 0.109 1.791 sum 8.930 -6.322 29.614 31.570 Atomic orbital electron populations 1.21877 0.91135 1.04037 1.03497 1.20178 0.98509 1.00734 0.90026 0.86900 1.20236 0.80374 0.84605 0.84447 1.90709 1.37745 1.25979 1.86694 1.45981 1.53524 1.32214 1.05499 1.21474 0.98761 0.96186 0.82684 1.22756 0.98752 0.99890 0.92849 1.23879 0.95352 1.00475 1.00995 1.21037 0.92346 0.89106 0.91411 1.42519 1.43179 1.05915 1.45387 1.19112 1.10664 0.96780 1.11083 0.89019 1.24686 0.98640 0.97286 0.98462 1.69698 1.35678 1.23265 1.29253 0.86558 0.80483 0.83302 0.78181 1.21015 1.21672 1.20420 1.23455 0.99499 1.00638 0.95204 1.19359 1.02781 0.94231 0.97811 1.17157 0.97122 0.79051 0.95149 1.91516 1.90831 1.33716 1.94771 1.21144 1.03851 0.96078 0.97678 1.20841 0.95263 0.93176 0.98645 1.21219 1.01476 1.01705 0.94330 1.17083 0.91847 0.89016 0.87641 1.91527 1.71411 1.80230 1.66711 0.90991 0.91080 0.90837 0.76354 0.91822 0.91334 0.89251 0.90938 0.91329 0.91035 0.80533 0.92972 0.91421 0.89985 0.83977 0.83905 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.88 37.16 0.33 -0.92 16 2 C -0.07 -0.74 2.79 -92.92 -0.26 -1.00 16 3 H 0.11 1.01 7.13 -51.93 -0.37 0.64 16 4 C 0.52 6.65 6.60 -10.99 -0.07 6.58 16 5 O -0.53 -8.67 14.55 5.55 0.08 -8.59 16 6 N -0.72 -8.42 5.45 -60.29 -0.33 -8.75 16 7 C 0.13 1.68 5.50 -4.04 -0.02 1.66 16 8 C -0.12 -1.70 3.62 -89.81 -0.33 -2.03 16 9 C -0.17 -2.58 7.44 -25.83 -0.19 -2.78 16 10 C 0.17 3.17 4.57 -67.03 -0.31 2.87 16 11 N -0.73 -16.69 5.11 -52.55 -0.27 -16.95 16 12 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 13 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 14 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 15 N -0.93 -28.88 13.97 55.49 0.78 -28.10 16 16 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 20 C -0.15 -2.19 7.39 -25.93 -0.19 -2.38 16 21 C -0.14 -1.47 4.41 -104.49 -0.46 -1.93 16 22 C 0.13 1.27 7.25 -39.43 -0.29 0.99 16 23 F -0.13 -1.28 16.19 2.25 0.04 -1.24 16 24 C -0.17 -1.20 10.02 -39.51 -0.40 -1.60 16 25 C -0.06 -0.38 10.04 -39.60 -0.40 -0.77 16 26 C -0.17 -1.33 10.02 -39.51 -0.40 -1.73 16 27 C 0.16 1.74 6.13 -39.43 -0.24 1.50 16 28 F -0.12 -1.49 13.81 2.25 0.03 -1.45 16 29 H 0.07 0.68 6.31 -51.93 -0.33 0.35 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.55 7.56 -51.93 -0.39 0.15 16 32 H 0.40 3.95 7.89 -40.82 -0.32 3.63 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 39 H 0.36 8.11 5.76 -40.82 -0.24 7.87 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -33.43 376.06 -8.47 -41.90 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.28 Total: 9.04 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.47 Total: -8.46 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.18 Total: -53.81 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.43 -8.47 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100506807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.953 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds